Tree Position

R-M269 > L23 > L51 > P310 > L151 > S1194 > S1200 > S14328 > 13184964-C-G

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19) POS-REF-ALT (hg38) Blocks Names Region McDonald BED combBED STRBigY3
N25118
4534797-C-A 4666756-C-A A+
56832540-T-A A*
13451169-A-T 11295493-A-T A*
56827246-C-T A*
56829842-A-C A*
56831057-C-CATTGT A*
56832482-C-A A*
10965540-A-T A*
56831461-C-CTCCATTCCAT A*
13695053-A-T 11539377-A-T A*
56831503-C-T A*
13450383-C-T 11294707-C-T A*
13695029-A-G 11539353-A-G A*
58980740-C-G 56834593-C-G A*
56835691-T-G A*
19758799-A-AT 17646919-A-AT P5_Prx 17×TA*
24272637-G-A 22126490-G-A BY2227 P3_b1 A*
13449784-C-A 11294108-C-A A*
4410240-C-T 4542199-C-T F9029 A*
28816737-G-T 26670590-G-T A*
58980084-T-C 56833937-T-C A*
13450426-T-C 11294750-T-C A*
13450227-C-G 11294551-C-G A*
25981767-C-A 23835620-C-A P1_Y1 A*
25598014-T-G 23451867-T-G P1_gr1 A*
22433010-T-G 20271124-T-G DYZ19 A*
22277698-A-C 20115812-A-C DYZ19 A*
19945674-G-A 17833794-G-A P5_Prx A*
19669769-G-C 17557889-G-C P5_Prx A*
13450293-C-CCATTT 11294617-C-CCATTT A*
56827043-A-T A*
56826713-A-T A*
56833961-A-T A*
56831385-A-G A*
13489743-C-A 11334067-C-A A*
28816738-G-T 26670591-G-T A*
13489647-A-G 11333971-A-G A*
56834379-A-T A*
56827041-T-C A*
13449065-C-T 11293389-C-T A*
13450251-G-T 11294575-G-T A*
56829840-C-T A*
26428134-C-CT 24281987-C-CT P1_Y1 15×TA*
13450222-C-A 11294546-C-A A*
7155780-T-TA 7287739-T-TA 14×AA*
58979225-T-C 56833078-T-C A*
58980069-T-C 56833922-T-C A*
58976304-T-C 56830157-T-C A*
58973187-T-A 56827040-T-A A*
25805091-C-CA 23658944-C-CA P1_b3 16×AA*
19726191-T-TA 17614311-T-TA P5_Prx 12×AA*
4483744-G-A 4615703-G-A FGC81632 A*
18353712-A-AT 16241832-A-AT P6_Prx 9×TA*
19888737-A-AT 17776857-A-AT P5_Prx 11×TA*
58979275-T-C 56833128-T-C BY196841 A*
59006061-T-A 56859914-T-A A*
58972888-C-T 56826741-C-T A*
59017118-C-T 56870971-C-T A*
8680040-T-A 8811999-T-A BY75131 YY+
15532797-G-A 13420917-G-A BY102314 Y+
19422660-C-G 17310780-C-G BY128968 YY+
19251035-G-A 17139155-G-A BY127687 YY+
3727734-C-T 3859693-C-T FT258541 +
15993649-A-G 13881769-A-G BY76545Y69227 YY+
3512301-T-A 3644260-T-A FT258451 +
15662397-A-G 13550517-A-G FT260819 YY+
3489902-C-A 3621861-C-A FT258441 +
7265493-C-G 7397452-C-G BY64252 YY+
4979315-T-A 5111274-T-A FT258983 +
8072857-G-A 8204816-G-A FT259843 Y+
6717751-T-C 6849710-T-C BY60896 YY+
13867745-C-T 11747039-C-T BY54559 +
10745145-C-T FT225291 +
9515806-C-T 9678197-C-T FT260186 +
14316845-G-A 12196139-G-A FT260469 YY+
18048646-A-T 15936766-A-T BY119462 YY+
23573613-A-G 21411727-A-G BY146408 YY+
21407392-T-A 19245506-T-A FT261990 YY+
22294226-A-G 20132340-A-G BY216492 DYZ19 +
22473430-G-T 20311544-G-T BY48631 DYZ19 +
23974776-A-G 21828629-A-G BY148920 Y+
24470603-T-C 22324456-T-C BY150185 Y+
18718886-A-ATATCTATC 16607006-A-ATATCTATC 13×TATC*
7360580-AC-A,AA 7492539-AC-A,AA *
4389262-T-C 4521221-T-C FGC81655 *
3741535-T-G 3873494-T-G FT318331 *
19500593-G-GAGAA 17388713-G-GAGAA 15×AGAA*
13488584-C-A 11332908-C-A *
17831207-CTTT-C 15719327-CTTT-C 17×T*
7723829-G-GAAGAA 7855788-G-GAAGAA 12×AAGAA*
4444355-T-C 4576314-T-C *
5409728-T-TTTTC 5541687-T-TTTTC 18×TTTC*
13450318-T-C 11294642-T-C *
17140510-C-CT 15028630-C-CT 19×T*
10669515-ATT-A *
4632859-C-T 4764818-C-T *
24291375-GA-G 22145228-GA-G P3_t1 9×A**
13140537-C-A 10630023-C-A FT428034 **
18518331-G-T 16406451-G-T P6_Dst **
2677488-G-T 2809447-G-T **
25964919-G-T 23818772-G-T P1_Y1 **
17608359-T-TA 15496479-T-TA **
6264528-T-A 6396487-T-A IR3_Dst **
10630018-T-G FT428033 **
25995054-TAC-T 23848907-TAC-T P1_Y1 **
12372553-T-A A19226 **
7285581-A-T 7417540-A-T **
7285578-A-T 7417537-A-T **
13459082-T-C 11303406-T-C **
27978560-ATTTT-A 25832413-ATTTT-A P1_Y2 14×T**
21574564-A-G 19412678-A-G **
4641487-T-C 4773446-T-C **
17124264-A-T 15012384-A-T **
27762774-C-CAT 25616627-C-CAT P1_Y2 **
22542038-C-T 20380152-C-T **
13643321-A-G 11487645-A-G **
5308799-T-G 5440758-T-G FT323489 19×AG**
13141906-C-T 10631392-C-T **
10001058-CT-C 10163449-CT-C 16×T**
24387087-C-T 22240940-C-T **
59017778-A-AAT 56871631-A-AAT 10×AT**
9330828-T-C 9493219-T-C ***
16063227-CT-C,CTTTCTTTCTTTCT 13951347-CT-C,CTTTCTTTCTTTCT ***
22253290-T-A 20091404-T-A DYZ19 ***
13455559-T-TATTCC 11299883-T-TATTCC 8×ATTCC***
22333888-A-G 20172002-A-G DYZ19 ***
16503310-A-G 14391430-A-G ***
13459108-G-T 11303432-G-T ***
13469516-T-C 11313840-T-C ***
2775124-ATT-A 2907083-ATT-A 14×T***
56861837-AACCTG-A,ACCTA ***
8389569-CTTTTT-C 8521528-CTTTTT-C 25×T***
4275437-C-CA 4407396-C-CA 19×A***
10014984-ATT-A 10177375-ATT-A 27×T***
17385421-C-CA 15273541-C-CA 15×A***
16562782-T-TA 14450902-T-TA 18×A***
13486866-C-A,G 11331190-C-A,G ***
3359703-C-T 3491662-C-T FT63843 ***
10678806-T-A ***
26153962-G-GA 24007815-G-GA P1_Y1 15×A***
10678801-T-A ***
13470099-C-G 11314423-C-G ***
24386960-CTA-C 22240813-CTA-C ***
28545880-CAA-C 26399733-CAA-C 20×A***
13479193-A-T 11323517-A-T ***
6675809-T-TA 6807768-T-TA 12×A***
13484166-C-A 11328490-C-A ***
28818172-G-C 26672025-G-C ***
4896649-C-CA 5028608-C-CA 16×A***
18035665-CTTTTT-C,CTTT 15923785-CTTTTT-C,CTTT 30×T***
3603491-AT-A,ATT 3735450-AT-A,ATT 24×T***
3809186-G-T 3941145-G-T ***
13479199-C-T 11323523-C-T ***
26834853-A-G 24688706-A-G FGC29087 P1_g2 11×AAGG***
56830556-ATTC-A ***
13465894-T-A,G 11310218-T-A,G ***
5904031-CAAA-C 6035990-CAAA-C 27×A***
13484160-G-C 11328484-G-C ***
6489371-CA-C 6621330-CA-C 25×A***
28818230-T-A,C 26672083-T-A,C ***
13489112-GCCT-G 11333436-GCCT-G ***
16063240-CTT-C 13951360-CTT-C ***
17332750-CA-C 15220870-CA-C 22×A***
23120576-GT-G 20958690-GT-G 11×T***
14319546-C-T 12198840-C-T ***
21853778-TAA-T 19691892-TAA-T 11×A***
28810068-G-A 26663921-G-A ***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.

Age Analysis Information (work in progress)

AllMcDonaldYFull
Kit: N251181516943294963288350639
Used in age calculations1516943294963288350639
Counts of SNPs1313
Variant counts last updated 2022-07-13 03:00:38.



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