Tree Position

R-P312/S116 > Z40481 > ZZ11 > DF27/S250 > Z195/S355 > Z198 > Z46513 > ZS312 > Z262 > M167 > Z264 > Z205 > ~22224168-A-C > Z206/S235 > Z208/S362 > Z207/S251 > CTS9762 > CTS4299

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19) POS-REF-ALT (hg38) Blocks Names Region McDonald BED combBED STRBigY3
13449108-C-T 11293432-C-T A*
13447734-C-A 11292058-C-A A*
28817713-C-T 26671566-C-T A*
28816788-C-G 26670641-C-G A*
13450909-T-A 11295233-T-A A*
56833702-C-A A*
22305217-T-C 20143331-T-C DYZ19 A*
24350539-T-A 22204392-T-A P3_t1 A*
26117499-G-A 23971352-G-A P1_Y1 A*
26167343-A-G 24021196-A-G P1_Y1 A*
26244117-C-A 24097970-C-A P1_Y1 A*
22517413-A-C 20355527-A-C FT38401 FT47599 Y+
9731953-C-A 9894344-C-A L486 IR3_Prx +
7669235-CT-C 7801194-CT-C 8×T+
2904994-C-A 3036953-C-A BY57203 YY+
3727293-G-T 3859252-G-T FT400930 +
4798779-G-C 4930738-G-C FT401045 +
5287994-G-A 5419953-G-A FT401100 +
5713142-C-T 5845101-C-T FT401139 +
5894619-A-G 6026578-A-G FT401152 +
7401462-C-A 7533421-C-A FT401260 YY+
7936958-C-A 8068917-C-A FT401300 YY+
8531017-C-T 8662976-C-T FT401354 YY+
8545483-G-T 8677442-G-T BY73885 YY+
8661838-CA-C 8793797-CA-C +
8673657-C-T 8805616-C-T BY75087 Y+
8987466-T-C 9149857-T-C FT401402 +
11031492-A-G FT440213 +
13988700-T-A 11867994-T-A FT401482 YY+
15203638-A-G 13091724-A-G BY100155 YY+
16061977-G-A 13950097-G-A BY105597 YY+
17752548-T-C 15640668-T-C FT401818 YY+
17760021-A-C 15648141-A-C BY117197 YY+
18815044-G-T 16703164-G-T FT401918 YY+
19237295-C-T 17125415-C-T BY127565 YY+
22204576-C-A 20042690-C-A FT402064 Y+
22267046-G-A 20105160-G-A FT454015 DYZ19 +
22754367-T-A 20592481-T-A FT402093 YY+
22813371-C-A 20651485-C-A FT402097 YY+
23341601-C-A 21179715-C-A FT112271 Y+
23775237-TA-T 21613351-TA-T +
24437312-A-G 22291165-A-G BY149895 Y+
28815983-G-T 26669836-G-T FT462744 +
13868185-C-CGAATG 11747479-C-CGAATG 4×GAATG*
10687169-A-G *
19397160-G-GAGAT 17285280-G-GAGAT 7×AGAT**
16813861-T-TTTTA 14701981-T-TTTTA 6×TTTA**
13992191-C-CAA 11871485-C-CAA 22×A**
13608647-CAAAAA-C 11452971-CAAAAA-C 27×A**
16757043-ATTTTTTTT-A 14645163-ATTTTTTTT-A 27×T**
12377136-GTA-G **
9551332-G-GTC 9713723-G-GTC IR3_Prx **
13455606-T-C 11299930-T-C **
5270693-C-CTT 5402652-C-CTT 22×T**
3618300-T-C 3750259-T-C **
3872994-C-T 4004953-C-T **
4067508-CTTTTTTTTT-C 4199467-CTTTTTTTTT-C 29×T**
4681326-G-A 4813285-G-A **
4698333-A-G 4830292-A-G **
7061296-C-T 7193255-C-T **
7660032-A-T 7791991-A-T BY66623 **
7984147-A-G 8116106-A-G **
13445170-G-T 11289494-G-T **
13470942-T-C 11315266-T-C BY85848 **
14000018-C-A 11879312-C-A FT111198 **
16679142-T-C 14567262-T-C **
16709168-A-G 14597288-A-G **
18797780-C-T 16685900-C-T **
19267335-G-A 17155455-G-A **
21850031-G-A 19688145-G-A **
21995946-T-C 19834060-T-C **
22100053-T-C 19938167-T-C **
22131782-GA-G 19969896-GA-G **
22474968-G-C 20313082-G-C DYZ19 **
22955213-A-G 20793327-A-G **
23002462-C-T 20840576-C-T **
23007005-A-G 20845119-A-G **
26058116-A-T 23911969-A-T P1_Y1 **
33227-A-T **
18914164-G-GTA 16802284-G-GTA 8×TA***
4315892-C-T 4447851-C-T ***
4339324-T-A 4471283-T-A ***
58969305-G-A 56823158-G-A ***
28515523-TA-T 26369376-TA-T 11×A***
6784476-GAAA-G 6916435-GAAA-G 23×A***
28808653-T-A,C 26662506-T-A,C ***
4803315-CTT-C 4935274-CTT-C 13×T***
28815248-G-T 26669101-G-T ***
18695923-A-ATT 16584043-A-ATT 12×T***
16506766-CAAAAA-C 14394886-CAAAAA-C 19×A***
9992129-TTT-G 10154520-TTT-G ***
19528524-CAAAAAA-C 17416644-CAAAAAA-C 18×A***
13453146-T-TC 11297470-T-TC ***
18973022-AT-A 16861142-AT-A ***
16301002-G-T 14189122-G-T 18×A***
13928055-G-A 11807349-G-A FT61347 ***
5986595-G-GTT 6118554-G-GTT 28×T***
2885925-A-AT 3017884-A-AT 9×T***
6981359-C-T 7113318-C-T ***
17951299-ATTTTT-A,ATT 15839419-ATTTTT-A,ATT 25×T***
13472543-G-T 11316867-G-T ***
13338972-A-T 11183296-A-T ***
16432049-G-A 14320169-G-A ***
5350037-CTTTTT-C 5481996-CTTTTT-C 21×T***
3844307-C-CT 3976266-C-CT 9×T***
13962042-CTT-C,CT 11841336-CTT-C,CT 28×T***
14774154-C-G 12662223-C-G ***
15698757-G-GACACAC 13586877-G-GACACAC 24×AC***
5756916-GTATA-G 5888875-GTATA-G 8×TA***
4019849-CA-C,CAA 4151808-CA-C,CAA 16×A***
17242978-TACAC-T,TAC 15131098-TACAC-T,TAC 18×AC***
3102417-ATTTT-A 3234376-ATTTT-A 17×T***
4880709-GTT-G,GTTT 5012668-GTT-G,GTTT 22×T***
19513578-A-ATT 17401698-A-ATT 20×T***
4089222-A-G 4221181-A-G ***
4520997-A-G 4652956-A-G ***
6052190-T-C 6184149-T-C ***
7297427-A-G 7429386-A-G ***
9827410-C-T 9989801-C-T ***
9992122-T-TG 10154513-T-TG ***
13349561-T-C 11193885-T-C ***
14195214-CA-C,CAA 12074508-CA-C,CAA 17×A***
14297751-A-G 12177045-A-G ***
14682578-T-C 12570644-T-C ***
17592905-T-C 15481025-T-C ***
17945177-A-T 15833297-A-T ***
18596143-A-G 16484263-A-G ***
21933949-T-C 19772063-T-C ***
22814360-T-C 20652474-T-C ***
22815417-T-C 20653531-T-C ***
22838559-T-C 20676673-T-C FT332096 ***
56851536-T-G ***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.