Tree Position

R-P312/S116 > Z290 > L21/S145 > DF13 > Z39589 > L1335/S530 > L1065 > Z16325 > S744 > S764 > FGC28985 > FGC28995 > FGC28994 > BY184054

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19) POS-REF-ALT (hg38) Blocks Names Region McDonald BED combBED STRBigY3
512456
BigY2
512456
4379319-G-A 4511278-G-A A*
5930530-T-C 6062489-T-C FT69490 A*
25947788-C-T 23801641-C-T P1_Y1 A*A*
13469974-T-A 11314298-T-A A*
3448944-A-T 3580903-A-T A*
28817354-C-A 26671207-C-A A*
26424314-C-CA 24278167-C-CA P1_Y1 23×AA*
20750453-C-A 18588567-C-A P4_Prx A*
13451473-C-G 11295797-C-G A*
13452921-T-C 11297245-T-C A*
13471810-T-TC 11316134-T-TC A*
20473133-G-A 18311247-G-A BY154935 P5_Dst A*
8792679-T-C 8924638-T-C FT411885 YY+**
15052654-AC-A 12940745-AC-A ++
19134591-G-T 17022711-G-T YY++
21517486-C-A 19355600-C-A YY++
21400547-G-T 19238661-G-T YY++
4076470-G-A 4208429-G-A FT351742 +
7628568-AT-A 7760527-AT-A 10×T**+
21870195-G-A 19708309-G-A YY++
28637593-T-C 26491446-T-C FT412143 +
9407663-C-T 9570054-C-T YY+**
3923082-G-A 4055041-G-A BY57918 **+
6402330-C-T 6534289-C-T *
18192472-G-A 16080592-G-A **
18868985-C-A 16757105-C-A **
20323695-CTT-C 18161809-CTT-C P5_Dst 9×T**
28698604-C-A 26552457-C-A **
22979867-A-G 20817981-A-G **
16319581-C-A 14207701-C-A **
10911721-C-A **
18767425-C-A 16655545-C-A **
24013852-TA-T 21867705-TA-T **
10688076-A-T **
16413580-G-T 14301700-G-T **
10957802-C-A **
22489473-C-T 20327587-C-T DYZ19 **
19600395-G-GT 17488515-G-GT P5_Prx 16×GT**
21584400-C-T 19422514-C-T FT284244 **
18465577-G-T 16353697-G-T P6_Dst **
13928675-A-G 11807969-A-G **
10844203-C-A **
8698623-C-A 8830582-C-A **
7164575-C-CAGA 7296534-C-CAGA **
7164569-AAGT-A 7296528-AAGT-A **
10667690-T-A **
10688063-T-A **
5809096-C-A 5941055-C-A **
5777857-C-A 5909816-C-A **
5226471-G-T 5358430-G-T **
3327019-G-T 3458978-G-T **
10781292-TCCATTCCATTCC-T **
56867461-G-GTATA 15×TA**
10824685-C-A **
13378353-A-G 11222677-A-G **
10911717-T-A **
10895756-C-T **
3662166-T-TTA 3794125-T-TTA 9×TA**
10910559-C-A **
13482230-A-G 11326554-A-G **
10969085-C-A **
11029171-C-A **
13445215-C-A 11289539-C-A **
13457740-C-CCGGGT 11302064-C-CCGGGT **
13858298-T-C 11737592-T-C **
21960334-C-A 19798448-C-A **
13915474-G-T 11794768-G-T **
10911723-T-C **
16573660-CA-C 14461780-CA-C 10×A**
11037119-A-T **
23841256-T-A 21679370-T-A **
6024939-C-T 6156898-C-T **
20637761-C-T 18475875-C-T P4_Prx **
56850379-T-A **
19814950-A-AAT 17703070-A-AAT P5_Prx **
3757496-T-C 3889455-T-C **
4049911-T-C 4181870-T-C **
16868746-CATATATATAT-C 14756866-CATATATATAT-C 22×AT**
10673112-CCTTTG-C **
10965349-G-T **
21082181-C-A 18920295-C-A **
11032937-A-T **
23210749-T-C 21048863-T-C **
6750599-A-G 6882558-A-G **
15658021-A-C 13546141-A-C **
58984839-A-G 56838692-A-G **
7939569-A-G 8071528-A-G **
10799617-C-G **
8066512-TA-T 8198471-TA-T **
8066552-A-G 8198511-A-G **
9890257-C-T 10052648-C-T FT168178 **
10989515-A-T **
13376277-T-C 11220601-T-C **
3459095-T-C 3591054-T-C **
7027609-G-A 7159568-G-A **
2946582-T-C 3078541-T-C **
13480694-T-C 11325018-T-C **
11005407-C-A **
21691569-T-A 19529683-T-A BY1781 9×A*****
26137256-T-C 23991109-T-C P1_Y1 **
56695981-G-T **
9119228-G-T **
56696011-G-T **
27757876-C-A 25611729-C-A P1_Y2 **
13480725-A-T 11325049-A-T **
13480705-C-T 11325029-C-T **
22855058-C-T 20693172-C-T **
22332653-A-C 20170767-A-C DYZ19 **
13480689-A-G 11325013-A-G **
10685785-TC-T **
10673178-C-T **
10673182-C-T **
24076-C-G **
10685769-T-C **
10685796-C-A **
10685820-T-G **
56843064-T-C **
16631752-T-C 14519872-T-C ***
15179010-CAAA-C,CAA 13067096-CAAA-C,CAA 25×A***
10746933-CAT-AAT,C ***
17257973-A-C 15146093-A-C ***
14824821-T-C 12712888-T-C ***
13922263-T-C 11801557-T-C ***
13482310-T-A 11326634-T-A ***
23633371-CTTT-C,CT 21471485-CTTT-C,CT 21×T***
24509530-A-T 22363383-A-T ***
22812629-CTTTTTT-C,CTTTTT 20650743-CTTTTTT-C,CTTTTT 28×T***
5155470-C-A 5287429-C-A ***
13482289-T-G 11326613-T-G ***
3663217-A-G 3795176-A-G ***
23515162-AT-A,ATTT 21353276-AT-A,ATTT 14×T***
23123125-C-A 20961239-C-A ***
22489464-A-T 20327578-A-T DYZ19 ***
19404503-CATTTGGG-C 17292623-CATTTGGG-C ***
3441463-C-CA 3573422-C-CA 8×A***
16623728-G-T 14511848-G-T ***
16586329-C-A 14474449-C-A ***
14819704-C-G 12707771-C-G ***
11000418-C-CGG ***
14432476-C-A 12311749-C-A ***
5643792-T-C 5775751-T-C ***
13811128-G-GGAAAA 11690422-G-GGAAAA ***
13485449-CT-C 11329773-CT-C ***
7139391-A-AAT 7271350-A-AAT ***
7534406-GTTTTTT-G 7666365-GTTTTTT-G 19×T***
11000421-TCC-T ***
23450716-C-A 21288830-C-A ***
23298091-C-CT 21136205-C-CT 10×T***
9843247-C-A 10005638-C-A ***
11027045-A-T ***
10755384-C-A ***
10755396-C-A ***
14780818-C-A 12668888-C-A ***
15688526-C-A 13576646-C-A ***
14529215-C-A 12417416-C-A ***
10746865-T-C,G ***
19421948-CT-C 17310068-CT-C 9×T***
10746950-T-G ***
10799635-C-T ***
15565368-C-A 13453488-C-A ***
21104437-TA-T,TAA 18942551-TA-T,TAA 22×A***
19125694-CAAAAA-C 17013814-CAAAAA-C 24×A***
11000416-T-A ***
28812452-C-G 26666305-C-G ***
21813991-C-A 19652105-C-A ***
21700595-GA-G,GAA 19538709-GA-G,GAA 17×A***
13922232-C-A 11801526-C-A ***
10799609-C-G ***
13485484-C-A 11329808-C-A ***
58978928-T-C 56832781-T-C ***
59007959-CAAAAAAAA-C 56861812-CAAAAAAAA-C 26×A***
13463391-C-T 11307715-C-T ***
6614513-GGT-G 6746472-GGT-G 9×GT***
16913443-AG-A 14801563-AG-A ***
21062762-A-ATG 18900876-A-ATG 17×TG***
13463374-C-T 11307698-C-T ***
23002837-C-A 20840951-C-A ***
15279206-G-GTT 13167305-G-GTT 13×T***
10799608-T-A ***
5532646-CTTT-C 5664605-CTTT-C 15×T***
6024536-T-TTG 6156495-T-TTG 15×TG***
13482273-C-A 11326597-C-A BY86092 ***
13486547-T-A 11330871-T-A ***
7705059-C-A 7837018-C-A ***
15669964-CAAAA-C,CAAA 13558084-CAAAA-C,CAAA 18×A***
7116215-C-A 7248174-C-A ***
3990699-GA-G 4122658-GA-G 10×A***
14768649-CA-C 12656718-CA-C ***
4244622-AT-A,ATT 4376581-AT-A,ATT 16×T***
6402344-T-C 6534303-T-C ***
3606267-C-A 3738226-C-A ***
18255888-TA-T,TAA 16144008-TA-T,TAA 22×A***
21992963-TAAAAAA-T,TAAAA 19831077-TAAAAAA-T,TAAAA 23×A***
14270195-C-A 12149489-C-A ***
18837640-C-A 16725760-C-A ***
28586694-T-C 26440547-T-C FT307005 ***
7514983-C-A 7646942-C-A ***
14296236-C-A 12175530-C-A ***
28619283-GA-G 26473136-GA-G 9×A***
8721390-C-A 8853349-C-A ***
13463381-A-T 11307705-A-T ***
13482290-T-A 11326614-T-A ***
7287974-C-CTT 7419933-C-CTT 12×T***
13951501-G-GTA 11830795-G-GTA 9×TA***
4377969-CTT-C,CT 4509928-CTT-C,CT 19×T***
13485467-G-T 11329791-G-T ***
4928938-G-T 5060897-G-T ***
5927040-G-T 6058999-G-T ***
14071354-CTTTTTTTTTT-C 11950648-CTTTTTTTTTT-C 25×T***
17895175-ATTTTT-A,ATT 15783295-ATTTTT-A,ATT 21×T***
10657293-T-C ***
10878334-C-T ***
10878340-A-C ***
6402323-A-G 6534282-A-G ***
22166171-CA-C 20004285-CA-C 8×A***
10024167-C-A 10186558-C-A ***
4958185-G-T 5090144-G-T ***
15076216-G-A 12964306-G-A ***
16734300-C-A 14622420-C-A ***
10878335-A-G ***
26437169-C-CA 24291022-C-CA P1_Y1 28×A***
6792628-CAA-C,CA 6924587-CAA-C,CA 18×A***
21905283-CAA-C,CAAA 19743397-CAA-C,CAAA 16×A***
10746925-T-C,TAC ***
13482274-C-A 11326598-C-A ***
6807684-C-A 6939643-C-A ***
13811119-G-A 11690413-G-A ***
13811120-A-C 11690414-A-C ***
9172668-C-A 9335059-C-A ***
56881231-T-C ***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.

Age Analysis Information (work in progress)

AllMcDonaldYFull
Kit: 512456934320176512307564775
Kit: 5124561488255693496198243809
Used in age calculations1488255693496198243809
Counts of SNPs66
Variant counts last updated 2021-02-06 02:54:03.



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