Tree Position

R-P312/S116 > Z290 > L21/S145 > S552 > DF13 > Z39589 > DF49/S474 > Z2980 > Z2976 > DF23 > Z2961 > Z2956 > M222 > Z2959 > Z46375 > BY35297 > FGC4087 > A725 > BY18044 > S676

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19) POS-REF-ALT (hg38) Blocks Names Region McDonald BED combBED STRBigY3
N112505
FTDNA
N112505
FGC
97TRM
16098533-C-G 13986653-C-G P8_Prx 12×GA*
13687760-T-G 11532084-T-G A*
16098537-G-A 13986657-G-A P8_Prx A*
8430520-G-C 8562479-G-C FGC37616 YY+++
8431900-G-T 8563859-G-T FGC37617 YY+++
9059534-A-T 9221925-A-T FGC37618 Y+++
15414885-G-T 13303005-G-T S679 YY+++
16298229-C-T 14186349-C-T FGC37620 YY+++
19483881-C-T 17372001-C-T FGC37622 Y+++
21359331-C-G 19197445-C-G FGC37623 YY+++
22440632-C-T 20278746-C-T FGC37624 DYZ19 ++
10042813-T-C 10205204-T-C FGC37609 +
4657408-C-T 4789367-C-T FGC37608 ++
3043149-G-A 3175108-G-A FGC37612 +
4169078-A-G 4301037-A-G FGC37613 ++
4776188-T-C 4908147-T-C FGC37614 ++
5452893-G-T 5584852-G-T FGC37615 ++
10014783-C-T 10177174-C-T FGC37619 Y++
16709238-G-C 14597358-G-C FGC37621 Y+
8218181-C-T 8350140-C-T YY***
4043583-C-A 4175542-C-A *
17950825-AATATATATATATATATATATAT-A 15838945-AATATATATATATATATATATAT-A 27×AT****
3563017-A-G 3694976-A-G ****
13472279-G-A 11316603-G-A BY47624 **
3785958-C-T 3917917-C-T **
4227691-G-T 4359650-G-T **
4255154-G-T 4387113-G-T **
4782685-A-G 4914644-A-G **
4782691-A-G 4914650-A-G **
4914161-T-C 5046120-T-C **
6011442-T-A 6143401-T-A **
6591404-G-T 6723363-G-T **
6721588-A-T 6853547-A-T **
7443091-A-C 7575050-A-C **
8062553-C-T 8194512-C-T **
9431575-A-T 9593966-A-T **
9721769-T-C 9884160-T-C IR3_Prx **
13252668-G-T 11096992-G-T **
13487509-A-G 11331833-A-G **
14134984-G-A 12014278-G-A **
14154407-A-G 12033701-A-G **
15148779-G-A 13036866-G-A **
15640271-T-A 13528391-T-A **
15856953-C-T 13745073-C-T **
15962980-T-G 13851100-T-G **
17226573-A-C 15114693-A-C **
17542633-G-T 15430753-G-T **
19386570-A-G 17274690-A-G **
21058742-G-A 18896856-G-A **
21238886-C-A 19077000-C-A **
21805155-T-C 19643269-T-C **
21913740-T-C 19751854-T-C **
21999749-T-C 19837863-T-C **
22622629-A-G 20460743-A-G **
23086819-T-C 20924933-T-C **
4914193-TGAA-T 5046152-TGAA-T **
8218181-CTCTT-C 8350140-CTCTT-C *****
19411914-A-AAAAGAAAGAAAGAAAG 17300034-A-AAAAGAAAGAAAGAAAG 14×AAAG**
19630709-T-A 17518829-T-A P5_Prx **
19669945-T-A 17558065-T-A P5_Prx **
5180582-A-T 5312541-A-T **
5180583-G-C 5312542-G-C **
5180584-A-T 5312543-A-T **
5275395-G-A 5407354-G-A **
14606921-C-A 12495123-C-A **
17454432-T-C 15342552-T-C **
23029050-A-G 20867164-A-G **
23029486-T-C 20867600-T-C **
26015303-GC-G 23869156-GC-G P1_Y1 **
26834853-AAAGG-A 24688706-AAAGG-A P1_g2 11×AAGG***
58824981-A-C 56765890-T-G ***
21687985-CAGAGAG-C 19526099-CAGAGAG-C 19×AG***
25955976-CTGTG-C 23809829-CTGTG-C P1_Y1 16×TG***
22357834-C-A 20195948-C-A DYZ19 ***
13724052-G-T 11568376-G-T ***
25747106-G-A 23600959-G-A P1_b3 ***
20084465-C-T 17972585-C-T BY212108 P5_Dst ***
58820272-C-T 56770599-G-A ***
22297717-A-T 20135831-A-T DYZ19 ***
22297705-A-G 20135819-A-G DYZ19 ***
22297684-T-A 20135798-T-A DYZ19 ***
58852260-C-G 56738611-G-C ***
22297702-TGAATGT-AGAGTGA 20135816-TGAATGT-AGAGTGA DYZ19 ***
58872916-T-C 56717955-A-G ***
22292760-A-T 20130874-A-T BY216346 DYZ19 ***
22292779-C-T 20130893-C-T BY216348 DYZ19 ***
22341704-G-T 20179818-G-T DYZ19 ***
22249121-G-T 20087235-G-T DYZ19 ***
22221464-G-T 20059578-G-T DYZ19 ***
22247112-A-T 20085226-A-T DYZ19 ***
22250353-T-A 20088467-T-A DYZ19 ***
22282949-A-G 20121063-A-G DYZ19 ***
22284355-A-T 20122469-A-T DYZ19 ***
22308147-G-C 20146261-G-C DYZ19 ***
25363877-C-T 23217730-C-T P2_r2 ***
24782876-A-G 22636729-A-G BY23044 P3_b2 ***
13223482-G-A 11067806-G-A ***
28577852-A-G 26431705-A-G ***
9295791-C-A 9458182-C-A ***
15932081-G-A 13820201-G-A ***
22292789-C-G 20130903-C-G DYZ19 ***
13488762-CCACC-TCACT 11333086-CCACC-TCACT ***
13488775-CCTCC-GCTCA 11333099-CCTCC-GCTCA ***
22264032-GT-G 20102146-GT-G DYZ19 ***
13724179-TG-AC 11568503-TG-AC ***
28117258-G-T 25971111-G-T P1_b4 ***
25466376-T-G 23320229-T-G P2_r2 ***
13489671-T-C 11333995-T-C ***
28117202-A-T 25971055-A-T P1_b4 ***
13737661-A-T 11581985-A-T ***
22297714-T-C 20135828-T-C DYZ19 ***
22297708-T-A 20135822-T-A DYZ19 ***
22297702-T-A 20135816-T-A DYZ19 ***
13223014-A-G 11067338-A-G ***
13616422-C-T 11460746-C-T ***
14631127-G-A 12519196-G-A ***
22297098-T-A 20135212-T-A DYZ19 ***
22292827-A-G 20130941-A-G DYZ19 ***
2677886-G-T 2809845-G-T ***
2678800-T-C 2810759-T-C ***
2803343-A-G 2935302-A-G ***
2810407-C-T 2942366-C-T ***
3128453-C-A 3260412-C-A ***
3459060-T-C 3591019-T-C ***
3459410-C-A 3591369-C-A ***
4019791-A-T 4151750-A-T ***
4019814-C-A 4151773-C-A ***
4431082-A-T 4563041-A-T ***
4740177-G-A 4872136-G-A ***
5065182-G-T 5197141-G-T ***
5570333-T-C 5702292-T-C ***
5701651-A-G 5833610-A-G ***
5813749-C-T 5945708-C-T ***
5813764-C-T 5945723-C-T ***
6151681-C-A 6283640-C-A IR3_Dst ***
6495261-A-G 6627220-A-G ***
6622886-T-A 6754845-T-A ***
6750948-G-A 6882907-G-A ***
6750950-C-A 6882909-C-A ***
6750962-T-C 6882921-T-C ***
6750963-G-A 6882922-G-A ***
6750990-A-G 6882949-A-G ***
6750996-A-G 6882955-A-G ***
7061915-T-A 7193874-T-A ***
7121415-G-A 7253374-G-A ***
7121472-C-G 7253431-C-G ***
7277085-C-A 7409044-C-A ***
7373303-G-T 7505262-G-T ***
7394014-G-C 7525973-G-C ***
7443652-A-C 7575611-A-C ***
7573239-C-A 7705198-C-A ***
8062963-A-G 8194922-A-G ***
8137063-G-A 8269022-G-A ***
8218185-T-C 8350144-T-C ***
8972292-T-C 9134683-T-C ***
9200092-G-T 9362483-G-T ***
9224819-C-A 9387210-C-A ***
9230860-A-G 9393251-A-G ***
9324119-G-A 9486510-G-A ***
9374333-T-C 9536724-T-C ***
9540132-T-G 9702523-T-G IR3_Prx ***
9556871-A-G 9719262-A-G IR3_Prx ***
9592327-G-T 9754718-G-T IR3_Prx ***
9592368-G-T 9754759-G-T IR3_Prx ***
9677390-A-C 9839781-A-C IR3_Prx ***
9947873-C-T 10110264-C-T ***
10015026-C-A 10177417-C-A ***
10033416-G-T 10195807-G-T ***
10041578-G-A 10203969-G-A ***
10103037-T-A 10265428-T-A ***
13115007-G-T 10604493-G-T ***
13121324-T-G 10610810-T-G ***
13201948-G-A 11046272-G-A ***
13222083-A-G 11066407-A-G ***
13223252-A-G 11067576-A-G ***
13253273-G-T 11097597-G-T ***
13312285-C-A 11156609-C-A ***
13460934-G-A 11305258-G-A ***
13460960-G-T 11305284-G-T ***
13465778-C-T 11310102-C-T ***
13471838-A-T 11316162-A-T ***
13488817-G-A 11333141-G-A ***
13488903-T-A 11333227-T-A ***
13606785-C-A 11451109-C-A ***
13733644-T-A 11577968-T-A ***
13740852-T-G 11585176-T-G ***
13878099-A-T 11757393-A-T ***
13981235-T-C 11860529-T-C ***
14113232-C-T 11992526-C-T ***
14131393-T-C 12010687-T-C ***
14155781-G-T 12035075-G-T ***
14180969-T-A 12060263-T-A ***
14181054-G-T 12060348-G-T ***
14247181-A-T 12126475-A-T ***
14390975-T-A 12270271-T-A ***
14441088-G-T 12320361-G-T ***
14683572-C-T 12571638-C-T ***
14703662-A-G 12591728-A-G ***
15117026-T-A 13005113-T-A ***
15150461-A-C 13038548-A-C ***
15245183-T-C 13133269-T-C ***
15245213-A-G 13133299-A-G ***
15296286-T-C 13184385-T-C ***
15297088-A-C 13185187-A-C ***
15676501-C-T 13564621-C-T ***
15804240-A-G 13692360-A-G ***
15952709-C-T 13840829-C-T ***
16069449-C-A 13957569-C-A ***
16105661-C-G 13993781-C-G P8_Prx ***
16135521-A-G 14023641-A-G P8_Dst ***
16161361-C-T 14049481-C-T P8_Dst ***
16210666-T-A 14098786-T-A ***
16498310-G-T 14386430-G-T ***
16685070-C-A 14573190-C-A ***
16978694-G-T 14866814-G-T ***
17067610-G-A 14955730-G-A ***
17228047-G-T 15116167-G-T ***
17268365-A-T 15156485-A-T ***
17700771-T-C 15588891-T-C ***
17998305-A-G 15886425-A-G P7_Gap ***
18001790-G-T 15889910-G-T P7_Gap ***
18317073-G-T 16205193-G-T P6_Prx ***
18318092-C-T 16206212-C-T P6_Prx ***
18344261-A-T 16232381-A-T P6_Prx ***
18352965-G-C 16241085-G-C P6_Prx ***
18480506-G-T 16368626-G-T P6_Dst ***
19097688-C-T 16985808-C-T ***
19138460-G-T 17026580-G-T ***
19176157-G-A 17064277-G-A ***
19304447-A-G 17192567-A-G ***
19352963-T-C 17241083-T-C ***
19583960-T-C 17472080-T-C P5_Prx ***
19611257-G-T 17499377-G-T P5_Prx ***
19663764-T-G 17551884-T-G P5_Prx ***
19720355-T-A 17608475-T-A P5_Prx ***
19753614-C-A 17641734-C-A P5_Prx ***
19753620-A-C 17641740-A-C P5_Prx ***
19753627-G-A 17641747-G-A P5_Prx ***
19755243-C-A 17643363-C-A P5_Prx ***
19771692-A-G 17659812-A-G P5_Prx ***
19853447-G-C 17741567-G-C P5_Prx ***
19853523-C-A 17741643-C-A P5_Prx ***
20025319-A-G 17913439-A-G P5_Prx ***
20084583-G-T 17972703-G-T P5_Dst ***
20084592-A-T 17972712-A-T P5_Dst ***
20084607-G-T 17972727-G-T P5_Dst ***
20084639-A-T 17972759-A-T P5_Dst ***
20084727-G-T 17972847-G-T P5_Dst ***
20131352-A-C 18019472-A-C P5_Dst ***
20243244-G-A 18081358-G-A P5_Dst ***
20358902-A-G 18197016-A-G P5_Dst ***
20377708-T-A 18215822-T-A P5_Dst ***
20426098-T-G 18264212-T-G P5_Dst ***
20426120-C-A 18264234-C-A P5_Dst ***
20426330-T-G 18264444-T-G P5_Dst ***
20438748-G-A 18276862-G-A P5_Dst ***
20438866-C-T 18276980-C-T P5_Dst ***
20472540-G-T 18310654-G-T P5_Dst ***
20534225-G-A 18372339-G-A P5_Dst ***
20534497-G-T 18372611-G-T P5_Dst ***
20615415-C-G 18453529-C-G P4_Prx ***
20618059-G-T 18456173-G-T P4_Prx ***
20632629-T-A 18470743-T-A P4_Prx ***
20645880-A-T 18483994-A-T P4_Prx ***
20697716-T-G 18535830-T-G P4_Prx ***
20747911-A-C 18586025-A-C P4_Prx ***
20752808-G-A 18590922-G-A P4_Prx ***
20873664-A-T 18711778-A-T P4_Dst ***
20943241-A-G 18781355-A-G P4_Dst ***
20949849-G-A 18787963-G-A P4_Dst ***
20998284-G-A 18836398-G-A P4_Dst ***
21197049-C-A 19035163-C-A ***
21198789-A-G 19036903-A-G ***
21273636-G-A 19111750-G-A ***
21377051-T-A 19215165-T-A ***
21448885-T-C 19286999-T-C ***
21474835-T-C 19312949-T-C ***
21829908-C-A 19668022-C-A ***
21996786-T-G 19834900-T-G ***
21997087-T-A 19835201-T-A ***
22197772-T-C 20035886-T-C ***
22227878-T-C 20065992-T-C DYZ19 ***
22227894-C-T 20066008-C-T DYZ19 ***
22234913-C-A 20073027-C-A DYZ19 ***
22268193-G-T 20106307-G-T DYZ19 ***
22268222-A-T 20106336-A-T DYZ19 ***
22292750-A-G 20130864-A-G DYZ19 ***
22292751-A-T 20130865-A-T DYZ19 ***
22292755-T-C 20130869-T-C DYZ19 ***
22292761-T-C 20130875-T-C DYZ19 ***
22292817-C-T 20130931-C-T DYZ19 ***
22311230-C-A 20149344-C-A DYZ19 ***
22311235-T-C 20149349-T-C DYZ19 ***
22322286-A-T 20160400-A-T DYZ19 ***
22324657-T-C 20162771-T-C DYZ19 ***
22327773-T-A 20165887-T-A DYZ19 ***
22327804-G-T 20165918-G-T DYZ19 ***
22327807-T-A 20165921-T-A DYZ19 ***
22327866-T-C 20165980-T-C DYZ19 ***
22347798-A-T 20185912-A-T DYZ19 ***
22352662-G-T 20190776-G-T DYZ19 ***
22357697-T-C 20195811-T-C DYZ19 ***
22358209-G-T 20196323-G-T DYZ19 ***
22358359-C-T 20196473-C-T DYZ19 ***
22358366-G-C 20196480-G-C DYZ19 ***
22361404-C-A 20199518-C-A DYZ19 ***
22361419-C-T 20199533-C-T DYZ19 ***
22364438-G-T 20202552-G-T DYZ19 ***
22366089-C-A 20204203-C-A DYZ19 ***
22450545-T-A 20288659-T-A DYZ19 ***
22481567-T-A 20319681-T-A DYZ19 ***
22481581-A-G 20319695-A-G DYZ19 ***
22481608-T-G 20319722-T-G DYZ19 ***
22481621-T-A 20319735-T-A DYZ19 ***
22482800-T-A 20320914-T-A DYZ19 ***
22502297-T-A 20340411-T-A DYZ19 ***
22644591-A-G 20482705-A-G ***
23004501-G-C 20842615-G-C ***
23084680-C-T 20922794-C-T ***
23172004-T-C 21010118-T-C ***
23332607-A-G 21170721-A-G ***
23332611-A-C 21170725-A-C ***
23332646-C-T 21170760-C-T ***
24013562-A-T 21867415-A-T ***
24109966-G-A 21963819-G-A P3_b1 ***
24113319-T-C 21967172-T-C P3_b1 ***
24143039-A-G 21996892-A-G P3_b1 ***
24157969-A-G 22011822-A-G P3_b1 ***
24209885-G-A 22063738-G-A P3_b1 ***
24232042-A-C 22085895-A-C P3_b1 ***
24283307-G-T 22137160-G-T P3_t1 ***
24339186-G-T 22193039-G-T P3_t1 ***
24552174-C-T 22406027-C-T P3_t2 ***
24621217-G-T 22475070-G-T P3_t2 ***
24646720-A-C 22500573-A-C P3_b2 ***
24661839-C-T 22515692-C-T P3_b2 ***
24862204-T-A 22716057-T-A IR1_R ***
24862229-C-A 22716082-C-A IR1_R ***
24924117-A-T 22777970-A-T g1 ***
24935648-C-T 22789501-C-T g1 ***
24954722-C-A 22808575-C-A g1 ***
24971623-C-A 22825476-C-A g1 ***
25157817-C-T 23011670-C-T g1 ***
25161500-G-T 23015353-G-T g1 ***
25207511-T-A 23061364-T-A P2_r1 ***
25207525-C-A 23061378-C-A P2_r1 ***
25207544-C-A 23061397-C-A P2_r1 ***
25207610-T-A 23061463-T-A P2_r1 ***
25207654-T-A 23061507-T-A P2_r1 ***
25207659-T-G 23061512-T-G P2_r1 ***
25231808-T-C 23085661-T-C P2_r1 ***
25231917-A-G 23085770-A-G P2_r1 ***
25246723-A-C 23100576-A-C P2_r1 ***
25287895-G-A 23141748-G-A P2_r1 ***
25310499-G-A 23164352-G-A P2_r1 ***
25456371-C-A 23310224-C-A P2_r2 ***
25505774-G-T 23359627-G-T P1_gr1 ***
25520369-T-G 23374222-T-G P1_gr1 ***
25525980-G-T 23379833-G-T P1_gr1 ***
25526043-T-G 23379896-T-G P1_gr1 ***
25626257-G-C 23480110-G-C P1_b3 ***
25626278-C-A 23480131-C-A P1_b3 ***
25628603-C-A 23482456-C-A P1_b3 ***
25709904-G-T 23563757-G-T P1_b3 ***
25717339-T-A 23571192-T-A P1_b3 ***
25732469-G-T 23586322-G-T P1_b3 ***
25737732-G-A 23591585-G-A P1_b3 ***
25839166-G-T 23693019-G-T P1_b3 ***
25848847-T-A 23702700-T-A P1_Y1 ***
25849791-T-G 23703644-T-G P1_Y1 ***
26101242-G-T 23955095-G-T P1_Y1 ***
26101337-T-A 23955190-T-A P1_Y1 ***
26110912-T-C 23964765-T-C P1_Y1 ***
26120035-G-A 23973888-G-A P1_Y1 ***
26228746-A-T 24082599-A-T P1_Y1 ***
26228780-G-T 24082633-G-T P1_Y1 ***
26312513-C-A 24166366-C-A P1_Y1 ***
26326757-C-T 24180610-C-T P1_Y1 ***
26376712-A-T 24230565-A-T P1_Y1 ***
26421963-A-G 24275816-A-G P1_Y1 ***
26421988-T-G 24275841-T-G P1_Y1 ***
26422041-A-G 24275894-A-G P1_Y1 ***
26463558-G-T 24317411-G-T P1_Y1 ***
26495996-C-G 24349849-C-G P1_Y1 ***
26517735-A-G 24371588-A-G P1_Y1 ***
26660049-A-C 24513902-A-C P1_g2 ***
26702911-T-A 24556764-T-A P1_g2 ***
26810585-C-T 24664438-C-T P1_g2 ***
26948489-C-A 24802342-C-A P1_r3 ***
26948634-G-A 24802487-G-A P1_r3 ***
26992940-G-T 24846793-G-T P1_r4 ***
27060137-G-T 24913990-G-T P1_r4 ***
27181561-G-A 25035414-G-A P1_g3 ***
27222196-C-A 25076049-C-A P1_g3 ***
27288727-G-A 25142580-G-A P1_g3 ***
27483196-C-A 25337049-C-A P1_Y2 ***
27483300-T-A 25337153-T-A P1_Y2 ***
27499071-G-T 25352924-G-T P1_Y2 ***
27504043-T-C 25357896-T-C P1_Y2 ***
27583032-A-T 25436885-A-T P1_Y2 ***
27608901-G-T 25462754-G-T P1_Y2 ***
27610099-T-G 25463952-T-G P1_Y2 ***
27651569-G-A 25505422-G-A P1_Y2 ***
27651586-C-A 25505439-C-A P1_Y2 ***
27651659-G-A 25505512-G-A P1_Y2 ***
27826758-T-G 25680611-T-G P1_Y2 ***
27862085-A-C 25715938-A-C P1_Y2 ***
27915825-G-A 25769678-G-A P1_Y2 ***
27915904-T-G 25769757-T-G P1_Y2 ***
28008008-C-A 25861861-C-A P1_Y2 ***
28025169-G-A 25879022-G-A P1_Y2 11×A***
28117261-G-T 25971114-G-T P1_b4 ***
28206822-A-G 26060675-A-G P1_b4 ***
28306524-C-T 26160377-C-T P1_b4 ***
28336662-C-A 26190515-C-A P1_b4 ***
28486604-T-C 26340457-T-C ***
28489824-G-A 26343677-G-A ***
28602211-G-T 26456064-G-T ***
58823281-C-G 56767590-G-C ***
58823715-C-G 56767156-G-C ***
58824988-A-T 56765883-T-A ***
58825017-T-C 56765854-A-G ***
58837572-C-T 56753299-G-A ***
58837627-T-C 56753244-A-G ***
58837731-A-G 56753140-T-C ***
58837757-T-A 56753114-A-T ***
58837761-C-T 56753110-G-A ***
58837820-T-C 56753051-A-G ***
58846800-C-A 56744071-G-T ***
58846896-A-T 56743975-T-A ***
58854578-G-T 56736293-C-A ***
58855789-A-T 56735082-T-A ***
58869353-T-C 56721518-A-G ***
58885971-C-A 56704900-G-T ***
58891017-A-G 56699854-T-C ***
58892984-G-A 56697887-C-T ***
58894677-G-T 56696194-C-A ***
58898724-G-T 56692147-C-A ***
58903390-T-C 56687481-A-G ***
58903452-T-C 56687419-A-G ***
58903471-C-G 56687400-G-C ***
58913720-G-T 56677151-C-A ***
28237962-AG-A 26091815-AG-A P1_b4 ***
22341375-GT-TC 20179489-GT-TC DYZ19 ***
16978999-GA-G 14867119-GA-G 14×A***
2915036-TTCCTTC-T 3046995-TTCCTTC-T ***
3311775-G-GC 3443734-G-GC ***
3571635-C-CA 3703594-C-CA ***
3641037-C-CTTTCT 3772996-C-CTTTCT ***
3679700-A-AAATC 3811659-A-AAATC ***
4382449-CAAAA-C 4514408-CAAAA-C 17×A***
4636107-ATAT-A 4768066-ATAT-A ***
5240978-C-CCCTT 5372937-C-CCCTT 5×CTTT***
5937208-A-ATCTC 6069167-A-ATCTC 17×TC***
5937244-ATATA-CTC 6069203-ATATA-CTC ***
6127674-GTCT-G 6259633-GTCT-G ***
6226090-T-TCTTC 6358049-T-TCTTC IR3_Dst ***
6750948-GCC-ACA 6882907-GCC-ACA ***
6750962-TG-CA 6882921-TG-CA ***
7312578-AAGGGAGGGAGGGGAGAAGGG-A 7444537-AAGGGAGGGAGGGGAGAAGGG-A ***
7394141-GTA-TTC 7526100-GTA-TTC ***
8218181-CTCTT-TTCTC 8350140-CTCTT-TTCTC ***
8690237-T-TTG 8822196-T-TTG ***
8814916-CT-C 8946875-CT-C 8×T***
9398651-A-AT 9561042-A-AT ***
13142948-G-GCATTCCATTC 10632434-G-GCATTCCATTC 11×CATTC***
13205597-TAT-AAA 11049921-TAT-AAA ***
13454807-T-TACTCC 11299131-T-TACTCC ***
13454813-A-ATTCCC 11299137-A-ATTCCC ***
13456020-A-ATTCCT 11300344-A-ATTCCT ***
13456025-A-ATTCCT 11300349-A-ATTCCT ***
13461141-CTAG-TTAT 11305465-CTAG-TTAT ***
13461179-GATACA-CATATC 11305503-GATACA-CATATC ***
13461206-GGCC-AGCG 11305530-GGCC-AGCG ***
13471806-AC-GT 11316130-AC-GT ***
13471838-ATACT-TTGCC 11316162-ATACT-TTGCC ***
13485554-GTGG-ATGT 11329878-GTGG-ATGT ***
13488814-CCGGACCCG-TGGAACACA 11333138-CCGGACCCG-TGGAACACA ***
13489363-CTTCTCCCC-GTTCCACT 11333687-CTTCTCCCC-GTTCCACT ***
13616426-GT-ATA 11460750-GT-ATA ***
13724151-ACC-TCG 11568475-ACC-TCG ***
13838166-G-GGAAAT 11717460-G-GGAAAT ***
13838180-T-TGGAAG 11717474-T-TGGAAG ***
13840824-T-TGGAAA 11720118-T-TGGAAA ***
14610898-T-TACAA 12499104-T-TACAA ***
14645425-GTTTTT-G 12533489-GTTTTT-G ***
14937873-C-CTTTTCTTTTG 12825948-C-CTTTTCTTTTG ***
15799163-CCTT-C 13687283-CCTT-C ***
16838966-G-GAAAT 14727086-G-GAAAT ***
16868741-TTATACATA-T 14756861-TTATACATA-T ***
17275760-A-AGGGAC 15163880-A-AGGGAC ***
17707375-TCAAAA-T 15595495-TCAAAA-T ***
17802165-GTAAAAAAA-G 15690285-GTAAAAAAA-G ***
18147537-T-TGG 16035657-T-TGG ***
19753632-ACATG-CCATC 17641752-ACATG-CCATC P5_Prx ***
20426351-CA-C 18264465-CA-C P5_Dst 19×A***
21665724-T-TAAAC 19503838-T-TAAAC ***
22099673-T-TTATTAG 19937787-T-TTATTAG ***
22268168-AGT-TAC 20106282-AGT-TAC DYZ19 ***
22268200-GG-TA 20106314-GG-TA DYZ19 ***
22292750-AAGTCT-GTGTCC 20130864-AAGTCT-GTGTCC DYZ19 ***
22292760-AT-TC 20130874-AT-TC DYZ19 ***
22292824-TGAA-AGGG 20130938-TGAA-AGGG DYZ19 ***
22299275-C-CA 20137389-C-CA DYZ19 ***
22311258-AT-CC 20149372-AT-CC DYZ19 ***
22327804-GTGT-TTGA 20165918-GTGT-TTGA DYZ19 ***
22341394-A-GT 20179508-A-GT DYZ19 ***
22357675-TTCG-ATCA 20195789-TTCG-ATCA DYZ19 ***
23018099-GT-G 20856213-GT-G ***
23316015-A-ACTTT 21154129-A-ACTTT ***
23435181-G-TT 21273295-G-TT 20×T***
25605740-CA-C 23459593-CA-C P1_gr1 15×A***
58823281-CCATCT-GCATTC 56767585-AGATGG-GAATGC ***
58837757-TATTC-AATTT 56753110-GAATA-AAATT ***
58862655-GTTAC-ATTAT 56728212-GTAAC-ATAAT ***
58876658-AC-CT 56714212-GT-AG ***
58881574-GTCCATTCCATTCCATTACAGTCCATTCCAATCCCTTCCATTCCTTTGCCTTCCATTCGAA-G 56709224-AGAATGGAATGGATTCGAATGGAAGGCAAAGGAATGGAAGGGATTGGAATGGACTGTAATG-A ***
58903484-GTCCATTCCAT-G 56687372-CTGGAATGGAA-C ***
58906053-TT-CC 56684817-AA-GG ***
58916176-TGAGTCCATTCCAT-CGAG 56674682-ATGGAATGGACTCA-CTCG ***
13476610-C-T 11320934-C-T ***
2960062-CAAA-C,CAA 3092021-CAAA-C,CAA 17×A***
4539033-TA-T,TAA 4670992-TA-T,TAA 24×A***
19146569-CTTTTT-C,CTTTT 17034689-CTTTTT-C,CTTTT 28×T***
4471003-CTTTT-C,CTTT 4602962-CTTTT-C,CTTT 29×T***
5218438-T-G 5350397-T-G ***
5219109-T-C 5351068-T-C ***
6114306-G-C 6246265-G-C ***
14858666-ATTT-A,ATT 12746732-ATTT-A,ATT 19×T***
20489632-T-C 18327746-T-C P5_Dst ***
21599510-A-G 19437624-A-G ***
27527396-T-C 25381249-T-C P1_Y2 ***
28620558-C-CAA 26474411-C-CAA 16×A***
56871649-TATGAGA-T,TATG ***
19049-T-C ***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.