Tree Position

R-P312/S116 > Z290 > L21/S145 > DF13 > FGC11134 > A353 > Z16250 > A114 > CTS4466/S1136 > S1115 > A541 > S1121 > Z16251 > Z18170 > FGC29280 > ~25345629-G-A > FGC29291 > FGC29289

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19) POS-REF-ALT (hg38) Blocks Names Region McDonald BED combBED STRFGC
KWNJH
3334451-C-G 3466410-C-G FGC29281 +
16999231-C-T 14887351-C-T FGC29288 Y+
3843444-T-G 3975403-T-G FGC29282 +
5970899-G-A 6102858-G-A FGC29283 +
23331839-C-T 21169953-C-T FGC29293 YY+
22662807-A-G 20500921-A-G FGC29292 YY+
8734207-A-G 8866166-A-G FGC29285 YY+
16936354-A-G 14824474-A-G FGC29287 YY+
58868436-A-C 56722435-T-G **
58971564-T-A 56825417-T-A **
22962414-G-GTTT 20800528-G-GTTT 20×T**
6586786-C-CTTTTTT 6718745-C-CTTTTTT 22×T**
13477765-G-A 11322089-G-A **
59005870-A-G 56859723-A-G **
59032665-A-G 56886518-A-G **
59031664-T-C 56885517-T-C **
4145802-T-C 4277761-T-C **
13389947-T-C 11234271-T-C **
3543788-G-C 3675747-G-C **
28585528-A-G 26439381-A-G **
3543491-T-A 3675450-T-A **
59005847-A-G 56859700-A-G **
59031660-T-C 56885513-T-C **
58891276-A-G 56699595-T-C **
13419377-G-T 11263701-G-T Z7996 **
13500110-CAAAAAA-C 11344434-CAAAAAA-C 16×A**
13292157-TC-T 11136481-TC-T **
59005842-C-G 56859695-C-G **
13259082-G-A 11103406-G-A **
13259068-T-C 11103392-T-C **
13405635-C-G 11249959-C-G Z7994 **
22437075-C-T 20275189-C-T DYZ19 **
20648567-A-AAAAGG 18486681-A-AAAAGG P4_Prx 11×AAAGG**
22355125-C-T 20193239-C-T DYZ19 ***
18361276-C-A 16249396-C-A P6_Prx ***
20257751-A-T 18095865-A-T P5_Dst ***
22366591-T-G 20204705-T-G DYZ19 ***
19822344-T-A 17710464-T-A P5_Prx ***
19692079-C-T 17580199-C-T P5_Prx ***
22366563-G-T 20204677-G-T DYZ19 ***
22354956-G-T 20193070-G-T DYZ19 ***
15244899-C-T 13132985-C-T ***
17999195-C-A 15887315-C-A P7_Gap ***
15294119-A-G 13182218-A-G ***
20355252-G-T 18193366-G-T P5_Dst ***
17323631-A-G 15211751-A-G ***
16151892-T-A 14040012-T-A P8_Dst ***
20257752-C-T 18095866-C-T P5_Dst ***
22332682-G-T 20170796-G-T DYZ19 ***
20355253-G-T 18193367-G-T P5_Dst ***
22235061-C-A 20073175-C-A DYZ19 ***
22332653-A-C 20170767-A-C DYZ19 ***
22332650-G-C 20170764-G-C DYZ19 ***
22309768-C-A 20147882-C-A DYZ19 ***
22309766-C-T 20147880-C-T DYZ19 ***
22235082-T-A 20073196-T-A DYZ19 ***
22235066-T-G 20073180-T-G DYZ19 ***
22235063-C-A 20073177-C-A DYZ19 ***
22343068-G-C 20181182-G-C DYZ19 ***
22235053-G-A 20073167-G-A DYZ19 ***
20355385-C-T 18193499-C-T P5_Dst ***
22232055-A-G 20070169-A-G DYZ19 ***
22343848-A-C 20181962-A-C DYZ19 ***
20478147-C-G 18316261-C-G P5_Dst ***
20478089-T-C 18316203-T-C P5_Dst ***
22344838-A-T 20182952-A-T DYZ19 ***
20430691-T-A 18268805-T-A P5_Dst ***
20426348-T-A 18264462-T-A P5_Dst ***
20356192-G-A 18194306-G-A P5_Dst ***
22344851-C-T 20182965-C-T DYZ19 ***
22249318-T-A 20087432-T-A DYZ19 ***
15158636-T-A 13046722-T-A ***
58848499-G-T 56742372-C-A ***
13278831-C-T 11123155-C-T ***
24314598-C-G 22168451-C-G P3_t1 ***
13356309-G-A 11200633-G-A ***
3442145-C-A 3574104-C-A ***
22309406-ACTGT-GCTGC 20147520-ACTGT-GCTGC DYZ19 ***
58840397-G-A 56750474-C-T ***
28058679-C-T 25912532-C-T P1_Y2 ***
22309083-G-C 20147197-G-C DYZ19 ***
5453891-C-CTTTTT 5585850-C-CTTTTT 19×T***
22291970-T-G 20130084-T-G DYZ19 ***
58844027-T-TTCCATTCCA 56746842-A-AATGGAATGG ***
22420611-G-T 20258725-G-T DYZ19 ***
22361129-AC-TG 20199243-AC-TG DYZ19 ***
3606672-GT-G 3738631-GT-G 19×T***
58908551-C-A 56682320-G-T ***
58908550-G-C 56682321-C-G ***
23832827-T-C 21670941-T-C ***
22502775-C-A 20340889-C-A DYZ19 ***
10006376-C-T 10168767-C-T BY82731 ***
10006373-A-G 10168764-A-G ***
13473556-T-C 11317880-T-C ***
13267431-CA-C 11111755-CA-C 16×A***
22354957-G-T 20193071-G-T DYZ19 ***
22420603-T-A 20258717-T-A DYZ19 ***
13728259-G-T 11572583-G-T ***
10091111-G-A 10253502-G-A ***
13725158-C-A 11569482-C-A ***
13725144-A-T 11569468-A-T ***
13344229-C-T 11188553-C-T ***
13121624-A-T 10611110-A-T ***
13121616-G-A 10611102-G-A ***
22421492-A-T 20259606-A-T DYZ19 ***
13120500-G-T 10609986-G-T ***
13120488-A-T 10609974-A-T ***
13104565-A-G 10594051-A-G ***
10101596-C-A 10263987-C-A ***
10006399-G-A 10168790-G-A ***
22420606-A-G 20258720-A-G DYZ19 ***
10006353-G-A 10168744-G-A BY82730 ***
9782897-A-T 9945288-A-T ***
9680586-C-T 9842977-C-T IR3_Prx ***
9566955-C-A 9729346-C-A IR3_Prx ***
9538629-G-A 9701020-G-A BY15516 IR3_Prx ***
9295653-G-C 9458044-G-C ***
6329031-C-A 6460990-C-A IR3_Dst ***
6247511-A-G 6379470-A-G IR3_Dst ***
6215762-A-T 6347721-A-T IR3_Dst ***
4820013-T-C 4951972-T-C ***
4402524-T-C 4534483-T-C ***
13121599-T-G 10611085-T-G ***
22502815-A-T 20340929-A-T DYZ19 ***
22434967-T-A 20273081-T-A DYZ19 ***
6489371-C-CAAAAAAAGGAAA 6621330-C-CAAAAAAAGGAAA 25×A***
13462086-CT-GG 11306410-CT-GG ***
13222907-AAG-A 11067231-AAG-A ***
13222625-G-GA 11066949-G-GA ***
13121587-CATA-TATG 10611073-CATA-TATG ***
10006408-TC-CT 10168799-TC-CT ***
9936521-TGAGAGC-CGAGGGT 10098912-TGAGAGC-CGAGGGT ***
9191076-AACACACACACACAC-A 9353467-AACACACACACACAC-A 20×AC***
8160178-C-CAAAAAAA 8292137-C-CAAAAAAA 20×A***
7758720-CTTT-C 7890679-CTTT-C 17×T***
7415647-T-TAGAC 7547606-T-TAGAC ***
5191228-C-CTTTTTTT 5323187-C-CTTTTTTT 27×T***
18626582-C-CTTTTTT 16514702-C-CTTTTTT 25×T***
4583025-G-GTTTTTTTTTTTT 4714984-G-GTTTTTTTTTTTT 27×T***
3832233-AACACAC-A 3964192-AACACAC-A 22×AC***
3205858-C-CAAAAA 3337817-C-CAAAAA 15×A***
2861534-C-CAAAA 2993493-C-CAAAA 25×A***
2806030-A-ATTTT 2937989-A-ATTTT 16×T***
7149622-CT-C 7281581-CT-C 19×T***
5491261-C-CA 5623220-C-CA 18×A***
26538868-TTATA-T 24392721-TTATA-T P1_g2 16×TA***
3550572-CTCA-C 3682531-CTCA-C ***
16506766-C-CA 14394886-C-CA 19×A***
13489034-GGCAG-TGCAC 11333358-GGCAG-TGCAC ***
19049500-T-TAAC 16937620-T-TAAC ***
58912483-C-G 56678388-G-C ***
26228689-C-CTTTTTTTT 24082542-C-CTTTTTTTT P1_Y1 27×T***
58882552-CCG-ACA 56708317-CGG-TGT ***
58868394-TTCCATTCCGTGGCTG-T 56722453-TGGAATGGACAGCCAC-T ***
58844029-T-TCTTTATATTCCATG 56746840-G-GGCATGGAATATAAA ***
58840425-TAGTTCG-CGATTCA 56750440-CGAACTA-TGAATCG ***
58838996-CTTCCATTG-TTTCCATTC 56751867-CAATGGAAG-GAATGGAAA ***
28802741-A-ATGGAG 26656594-A-ATGGAG ***
28529232-CAAA-C 26383085-CAAA-C 23×A***
27508705-GTT-CTC 25362558-GTT-CTC P1_Y2 ***
26902320-A-AAAAAAAC 24756173-A-AAAAAAAC P1_r3 ***
26253352-CT-AAAA 24107205-CT-AAAA P1_Y1 ***
26060208-G-AAAA 23914061-G-AAAA P1_Y1 ***
19187385-A-ATTT 17075505-A-ATTT 28×T***
25855557-GT-CC 23709410-GT-CC P1_Y1 ***
25246441-CTTCTTC-TTTTTTT 23100294-CTTCTTC-TTTTTTT P2_r1 ***
24485692-G-GTTTTTTTTTTTTTTT 22339545-G-GTTTTTTTTTTTTTTT 13×TTATT***
23832825-TTTTCCCT-CTCCCCCC 21670939-TTTTCCCT-CTCCCCCC ***
22502049-GTGTTGAG-CTGGTGAT 20340163-GTGTTGAG-CTGGTGAT DYZ19 ***
22420585-TA-CT 20258699-TA-CT DYZ19 ***
22354954-CCGG-GTTT 20193068-CCGG-GTTT DYZ19 ***
22127975-C-CTTTTTTTT 19966089-C-CTTTTTTTT 20×T***
20332111-C-CAAAAAAAAAAAAAAAAAAAAA 18170225-C-CAAAAAAAAAAAAAAAAAAAAA P5_Dst 30×A***
19469872-T-TCTCC 17357992-T-TCTCC ***
16344403-T-TCTTCTC 14232523-T-TCTTCTC ***
58905376-G-A 56685495-C-T ***
22481210-G-C 20319324-G-C DYZ19 ***
26299035-T-A 24152888-T-A P1_Y1 ***
27862381-A-G 25716234-A-G P1_Y2 ***
27714668-G-A 25568521-G-A P1_Y2 ***
27651091-G-A 25504944-G-A P1_Y2 ***
27586275-G-A 25440128-G-A P1_Y2 ***
27575341-T-A 25429194-T-A P1_Y2 ***
27536177-G-A 25390030-G-A P1_Y2 ***
27447612-T-C 25301465-T-C P1_Y2 ***
27447591-A-G 25301444-A-G P1_Y2 ***
27327983-G-T 25181836-G-T P1_g3 ***
26299036-G-A 24152889-G-A P1_Y1 ***
26253353-T-A 24107206-T-A P1_Y1 ***
28022790-G-T 25876643-G-T P1_Y2 ***
26253352-C-A 24107205-C-A P1_Y1 ***
25855554-C-G 23709407-C-G P1_Y1 ***
24534664-G-T 22388517-G-T P3_t2 ***
24296319-C-A 22150172-C-A P3_t1 ***
13129671-ATTTA-GCTCT 10619157-ATTTA-GCTCT ***
22502044-C-T 20340158-C-T DYZ19 ***
22499893-G-T 20338007-G-T DYZ19 ***
22499888-G-A 20338002-G-A DYZ19 ***
22499808-G-T 20337922-G-T DYZ19 ***
22498970-T-C 20337084-T-C DYZ19 ***
28022789-A-T 25876642-A-T P1_Y2 ***
28022805-G-A 25876658-G-A P1_Y2 ***
58892099-G-C 56698772-C-G ***
58868606-C-T 56722265-G-A ***
58891606-A-T 56699265-T-A ***
58882596-A-G 56708275-T-C ***
58882583-C-A 56708288-G-T ***
58882579-A-C 56708292-T-G ***
58882569-A-G 56708302-T-C ***
58882564-C-T 56708307-G-A ***
58882562-C-T 56708309-G-A ***
58879555-A-G 56711316-T-C ***
58877125-C-T 56713746-G-A ***
58869665-C-G 56721206-G-C ***
58858766-C-A 56732105-G-T ***
28058673-A-G 25912526-A-G P1_Y2 ***
58855132-C-T 56735739-G-A ***
58855126-G-T 56735745-C-A ***
58855103-G-A 56735768-C-T ***
58848524-C-T 56742347-G-A ***
58844951-C-T 56745920-G-A ***
58844228-T-C 56746643-A-G ***
58844220-A-C 56746651-T-G ***
58833648-C-T 56757223-G-A ***
58820477-G-A 56770394-C-T ***
28406121-G-T 26259974-G-T P1_gr2 ***
58913108-C-A 56677763-G-T ***
28491336-A-AAAAACACCCC 26345189-A-AAAAACACCCC ***
26344423-C-T 24198276-C-T P1_Y1 28×T***
19656707-T-C 17544827-T-C P5_Prx ***
22226515-A-G 20064629-A-G S3070 DYZ19 ***
13411435-T-G 11255759-T-G ***
22341149-CTTCT-GCTCA 20179263-CTTCT-GCTCA DYZ19 ***
58819922-A-T 56770949-T-A ***
22481215-G-C 20319329-G-C DYZ19 ***
22357269-G-T 20195383-G-T DYZ19 ***
22297476-T-G 20135590-T-G DYZ19 ***
22282202-C-T 20120316-C-T DYZ19 ***
22266353-T-C 20104467-T-C DYZ19 ***
19937298-A-C 17825418-A-C P5_Prx ***
14491316-G-A ***
22365946-C-T 20204060-C-T DYZ19 ***
22266350-A-T 20104464-A-T DYZ19 ***
13514892-TGAG-T 11359216-TGAG-T ***
22457319-G-GT 20295433-G-GT DYZ19 ***
58995395-TC-CA 56849248-TC-CA ***
58840518-T-G 56750353-A-C ***
22366464-C-T 20204578-C-T DYZ19 ***
22366459-G-A 20204573-G-A DYZ19 ***
22366453-G-T 20204567-G-T DYZ19 ***
22366443-C-T 20204557-C-T DYZ19 ***
22257146-G-A 20095260-G-A DYZ19 ***
22226522-T-A 20064636-T-A DYZ19 ***
22366768-C-T 20204882-C-T DYZ19 ***
13444937-A-G 11289261-A-G ***
22256966-T-G 20095080-T-G DYZ19 ***
22268392-ATTC-CTTCAAGA 20106506-ATTC-CTTCAAGA DYZ19 ***
18688521-C-AA 16576641-C-AA ***
22235306-AT-A 20073420-AT-A DYZ19 ***
13445465-CA-GG 11289789-CA-GG ***
58877109-G-C 56713762-C-G ***
58877079-G-C 56713792-C-G ***
58876266-T-G 56714605-A-C ***
24895672-T-A 22749525-T-A g1 ***
22365861-A-G 20203975-A-G DYZ19 ***
22266272-G-C 20104386-G-C DYZ19 ***
13111839-G-A 10601325-G-A ***
58870539-A-T 56720332-T-A ***
6329016-T-A 6460975-T-A IR3_Dst ***
19469890-G-C 17358010-G-C ***
22352923-C-A 20191037-C-A DYZ19 ***
59007959-CAAAAAAAA-C 56861812-CAAAAAAAA-C 26×A***
13140019-AG-A 10629505-AG-A ***
22281896-TC-GT 20120010-TC-GT DYZ19 ***
58844025-CA-C 56746844-AT-A ***
22229322-A-AG 20067436-A-AG DYZ19 ***
23773323-TACAC-T 21611437-TACAC-T 24×AC***
13469706-CG-AC 11314030-CG-AC ***
19656617-C-A 17544737-C-A P5_Prx ***
27637019-T-C 25490872-T-C P1_Y2 ***
58991415-CCT-GCC 56845268-CCT-GCC ***
58858775-T-C 56732096-A-G ***
22361221-G-T 20199335-G-T DYZ19 ***
22352434-G-T 20190548-G-T DYZ19 ***
22341726-T-C 20179840-T-C DYZ19 ***
22326470-A-G 20164584-A-G DYZ19 ***
22252638-C-T 20090752-C-T DYZ19 ***
22249285-G-T 20087399-G-T DYZ19 ***
13535706-C-T 11380030-C-T ***
13124959-A-G 10614445-A-G ***
22293080-G-A 20131194-G-A DYZ19 ***
13542886-T-C 11387210-T-C ***
22343082-A-T 20181196-A-T DYZ19 ***
22366759-A-T 20204873-A-T DYZ19 ***
22326461-G-C 20164575-G-C DYZ19 ***
17841328-GAC-G 15729448-GAC-G 22×AC***
22234681-T-C 20072795-T-C DYZ19 ***
13468835-G-T 11313159-G-T ***
58825044-T-C 56765827-A-G ***
22326435-T-A 20164549-T-A DYZ19 ***
9311327-A-C 9473718-A-C ***
22309799-C-G 20147913-C-G DYZ19 ***
58853460-C-G 56737411-G-C ***
13203936-A-T 11048260-A-T ***
22361234-C-A 20199348-C-A DYZ19 ***
22421942-T-G 20260056-T-G DYZ19 ***
22257034-G-T 20095148-G-T DYZ19 ***
22343862-TATG-GATA 20181976-TATG-GATA DYZ19 ***
13483238-TTG-GCC 11327562-TTG-GCC ***
9689078-G-GT 9851469-G-GT IR3_Prx 15×T***
13687627-AAT-CAA 11531951-AAT-CAA ***
9348430-T-C 9510821-T-C ***
58987557-TTGT-CTGC 56841410-TTGT-CTGC ***
58985694-TCT-GCA 56839547-TCT-GCA ***
58981976-TTTCCAC-T 56835829-TTTCCAC-T ***
28336668-C-CAAAAAA 26190521-C-CAAAAAA P1_b4 31×A***
22504528-AG-CT 20342642-AG-CT DYZ19 ***
22364716-TTTG-ATTT 20202830-TTTG-ATTT DYZ19 ***
22281901-AAT-GAG 20120015-AAT-GAG DYZ19 ***
22491029-T-A 20329143-T-A DYZ19 ***
22252662-ACATGGT-TCAATGA 20090776-ACATGGT-TCAATGA DYZ19 ***
22252645-TCTTCCTTTTGGC-CCTTAATTCTGGG 20090759-TCTTCCTTTTGGC-CCTTAATTCTGGG DYZ19 ***
13842553-CC-GA 11721847-CC-GA ***
13483081-AGTT-TGTC 11327405-AGTT-TGTC ***
13482926-CA-TG 11327250-CA-TG ***
13203922-CGGCATTG-TGGTATTA 11048246-CGGCATTG-TGGTATTA ***
13451489-TG-CA 11295813-TG-CA ***
22480585-TTTGAA-T 20318699-TTTGAA-T DYZ19 ***
58877098-A-T 56713773-T-A ***
58846705-G-C 56744166-C-G ***
22491030-T-A 20329144-T-A DYZ19 ***
58859251-T-C 56731620-A-G ***
22226736-A-C 20064850-A-C DYZ19 ***
22491031-T-G 20329145-T-G DYZ19 ***
22365860-C-A 20203974-C-A DYZ19 ***
58880717-G-T 56710154-C-A ***
22481930-G-T 20320044-G-T DYZ19 ***
13259132-A-C 11103456-A-C ***
22328421-T-C 20166535-T-C DYZ19 ***
5795860-CT-C 5927819-CT-C 18×T***
58910268-G-C 56680603-C-G ***
22491012-G-A 20329126-G-A DYZ19 ***
22502802-G-T 20340916-G-T DYZ19 ***
22236784-A-G 20074898-A-G DYZ19 ***
19937284-G-GCCCCC 17825404-G-GCCCCC P5_Prx 13×C***
22365859-G-T 20203973-G-T DYZ19 ***
13252766-C-T 11097090-C-T ***
22309978-G-C 20148092-G-C DYZ19 ***
22309976-T-G 20148090-T-G DYZ19 ***
13253393-TCGG-CCAGTTT 11097717-TCGG-CCAGTTT ***
58884398-G-T 56706473-C-A ***
9939388-A-G 10101779-A-G ***
24207530-CT-C 22061383-CT-C P3_b1 14×T***
22504416-CGAA-AGAC 20342530-CGAA-AGAC DYZ19 ***
58892120-T-A 56698751-A-T ***
22491021-C-G 20329135-C-G DYZ19 ***
13223513-G-A 11067837-G-A ***
17047682-GC-G 14935802-GC-G ***
13389826-C-T 11234150-C-T ***
22342845-ATC-GTT 20180959-ATC-GTT DYZ19 ***
22499831-A-G 20337945-A-G DYZ19 ***
15171226-C-CTTTT 13059312-C-CTTTT 19×T***
5179515-G-GAT 5311474-G-GAT 13×AT***
27791977-T-G 25645830-T-G P1_Y2 ***
13483792-TCC-CCT 11328116-TCC-CCT ***
6597340-T-TA 6729299-T-TA 28×A***
13862071-AAATGGAATGG-A 11741365-AAATGGAATGG-A 11×AATGG***
22244926-GA-G 20083040-GA-G DYZ19 ***
22422026-T-G 20260140-T-G DYZ19 ***
22263779-GGTGT-AGTGG 20101893-GGTGT-AGTGG DYZ19 ***
13622298-GAAGA-AAAGC 11466622-GAAGA-AAAGC ***
58910273-AAT-CAG 56680596-ATT-CTG ***
58882554-G-A 56708317-C-T ***
58874441-ATCCC-TTCCA 56716426-GGGAT-TGGAA ***
58910283-G-A 56680588-C-T ***
58908571-C-A 56682300-G-T ***
58854295-C-T 56736576-G-A ***
58828954-G-C 56761917-C-G ***
28395138-C-A 26248991-C-A P1_gr2 ***
13126310-G-C 10615796-G-C ***
13465704-A-T 11310028-A-T ***
58876444-G-C 56714427-C-G ***
21824255-C-CAA 19662369-C-CAA 30×A***
22352931-A-T 20191045-A-T DYZ19 ***
21148589-C-CAAAA 18986703-C-CAAAA 30×A***
27808469-C-T 25662322-C-T P1_Y2 ***
22355113-C-G 20193227-C-G DYZ19 ***
20118706-T-C 18006826-T-C P5_Dst ***
19740991-C-A 17629111-C-A P5_Prx ***
58864113-G-C 56726758-C-G ***
13475438-G-A 11319762-G-A ***
23901430-N-T 21739544-N-T ***
22236528-TAT-A 20074642-TAT-A DYZ19 ***
13483226-TAC-AG 11327550-TAC-AG ***
13483211-GGAGATACT-AGAAATATG 11327535-GGAGATACT-AGAAATATG ***
58831567-T-C 56759304-A-G ***
22365821-C-T 20203935-C-T DYZ19 ***
22355080-T-G 20193194-T-G DYZ19 ***
22309955-T-A 20148069-T-A DYZ19 ***
22354954-C-G 20193068-C-G DYZ19 ***
22504612-AGTT-TGTC 20342726-AGTT-TGTC DYZ19 ***
14609822-AT-A ***
58840380-G-C 56750491-C-G ***
22500116-A-T 20338230-A-T DYZ19 ***
22495918-G-C 20334032-G-C DYZ19 ***
22481754-G-T 20319868-G-T DYZ19 ***
22480701-T-A 20318815-T-A DYZ19 ***
22341863-A-C 20179977-A-C DYZ19 ***
22257033-C-T 20095147-C-T DYZ19 ***
20118722-C-G 18006842-C-G P5_Dst ***
22309972-T-A 20148086-T-A DYZ19 ***
13488598-ACGA-GCGC 11332922-ACGA-GCGC ***
13467585-G-C 11311909-G-C ***
9700780-C-CAA 9863171-C-CAA IR3_Prx 23×A***
6430439-TTATATATA-T 6562398-TTATATATA-T 19×TA***
22332548-A-T 20170662-A-T DYZ19 ***
13129621-G-A 10619107-G-A ***
22344649-A-C 20182763-A-C DYZ19 ***
22226532-CAAA-AAAT 20064646-CAAA-AAAT DYZ19 ***
58827979-A-T 56762892-T-A ***
22481762-G-C 20319876-G-C DYZ19 ***
13513955-A-G 11358279-A-G ***
13244690-A-G 11089014-A-G ***
15255769-GGTGTGTGT-G 13143855-GGTGTGT-G 24×GT***
22358737-A-T 20196851-A-T DYZ19 ***
23832825-T-C 21670939-T-C ***
22364944-A-T 20203058-A-T DYZ19 ***
58867576-CAGTCC-GAGTAA 56723290-GGACTG-TTACTC ***
22420772-GGTTC-TGTTA 20258886-GGTTC-TGTTA DYZ19 ***
20118672-CCTCGGGCAT-C 18006792-CCTCGGGCAT-C P5_Dst ***
13456019-GATTCCATTCC-G 11300343-GATTCCATTCC-G 11×ATTCC***
23505495-C-CAAA 21343609-C-CAAA 23×A***
58874683-A-C 56716188-T-G ***
58835796-T-C 56755075-A-G ***
22499843-A-T 20337957-A-T DYZ19 ***
22420764-T-C 20258878-T-C DYZ19 ***
59017778-A-AT 56871631-A-AT 10×AT***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.

Age Analysis Information (work in progress)

AllMcDonaldYFull
Kit: KWNJH*16000000100000008300000
Used in age calculations16000000100000008300000
Counts of SNPs54
Variant counts last updated 2018-06-18 21:27:16.

* BED data not available. Using default values.


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