Tree Position

R-M269 > L23 > L51 > P310 > L151 > S1194 > S1200 > S14328 > A8469 > ZS5789 > BY33855

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19) POS-REF-ALT (hg38) Blocks Names Region McDonald BED combBED STRBigY3
19898
13478931-G-A 11323255-G-A A*
10980714-C-T A*
19641290-A-AT 17529410-A-AT P5_Prx A*
18321275-G-GT 16209395-G-GT P6_Prx 19×TA*
6359640-T-TA 6491599-T-TA 22×AA*
10980698-C-T A*
13488641-C-A 11332965-C-A A*
23146630-A-AT 20984744-A-AT 10×TA*
10980699-C-G A*
13489850-C-T 11334174-C-T A*
4474188-T-C 4606147-T-C A*
6319339-G-C 6451298-G-C IR3_Dst A*
6182823-A-T 6314782-A-T IR3_Dst A*
28816725-A-T 26670578-A-T A*
28817528-G-T 26671381-G-T A*
19608729-G-GA 17496849-G-GA P5_Prx 11×AA*
4555908-T-C 4687867-T-C FT321019 A*
13488628-G-T 11332952-G-T A*
4474196-C-T 4606155-C-T A*
10922324-T-C A*
3427975-G-C 3559934-G-C A*
22291042-T-A 20129156-T-A DYZ19 A*
26472773-C-T 24326626-C-T P1_Y1 A*
5434294-G-A 5566253-G-A A*
20253869-G-GT 18091983-G-GT P5_Dst 13×TA*
18345943-A-AATAC 16234063-A-AATAC P6_Prx 9×ATACA*
8365653-C-G 8497612-C-G BY13038 YY+
6942531-T-C 7074490-T-C BY13037 YY+
7407969-C-A 7539928-C-A BY25604 YY+
8035840-C-T 8167799-C-T FT33926 YY+
8550647-A-G 8682606-A-G YY+
8400771-G-A 8532730-G-A BY25607 YY+
8463095-A-G 8595054-A-G FT33974 YY+
22460738-A-C 20298852-A-C FT457741 DYZ19 +
21355608-T-C 19193722-T-C BY25606 YY+
8752049-T-C 8884008-T-C BY13039 YY+
6448824-A-G 6580783-A-G FT33685 +
5525875-A-T 5657834-A-T FT33535 +
5815022-C-T 5946981-C-T FT33592 +
13216456-T-G 11060780-T-G +
4730233-C-T 4862192-C-T FT33364 +
4520176-A-C 4652135-A-C FT33320 +
4147883-C-G 4279842-C-G FT33238 +
4120346-T-C 4252305-T-C FT33236 +
3772242-C-T 3904201-C-T FT33165 +
3568332-C-A 3700291-C-A FT33123 +
5556423-C-A 5688382-C-A FT33546 +
23326714-A-G 21164828-A-G BY13036 YY+
7724832-GA-G 7856791-GA-G 8×A+
28481134-C-T 26334987-C-T S26259 +
15558463-T-C 13446583-T-C YY+
9042777-G-C 9205168-G-C FT34153 Y+
8605139-G-C 8737098-G-C FT33988 YY+
14711260-G-T 12599327-G-T BY13029 YY+
17347147-G-A 15235267-G-A YY+
15273785-C-T 13161874-C-T YY+
16408674-G-A 14296794-G-A BY13031 YY+
17143668-T-G 15031788-T-G YY+
14710724-C-T 12598791-C-T BY8192 YY+
14668275-G-T 12556341-G-T FT34421 Y+
14370150-A-G 12249446-A-G FT34373 YY+
14617049-C-T 12505247-C-T M2815 Y+
21779844-G-A 19617958-G-A Y87371Y107473 YY+
15550404-G-A 13438524-G-A BY13030 YY+
19043095-A-G 16931215-A-G FT35021 Y+
18076781-G-T 15964901-G-T YY+
19347302-G-T 17235422-G-T BY13032 YY+
21983042-A-G 19821156-A-G YY+
20813293-A-G 18651407-A-G BY13033 P4_Gap +
18119127-T-C 16007247-T-C YY+
18186902-C-T 16075022-C-T FT34919 Y+
18976841-G-A 16864961-G-A BY25605 YY+
16004605-T-C 13892725-T-C FT34592 Y+
13478972-C-T 11323296-C-T *
13478970-T-C 11323294-T-C *
6402114-A-G 6534073-A-G *
13478994-C-T 11323318-C-T *
13478929-C-A 11323253-C-A *
13478880-C-A 11323204-C-A *
22302312-G-A 20140426-G-A FT455550 DYZ19 *
4557949-G-A 4689908-G-A FT88589 *
5471896-AAAAGAAAGAAAG-A 5603855-AAAAGAAAGAAAG-A 17×AAAG*
3404057-A-G 3536016-A-G FT317108 *
13470105-A-G 11314429-A-G *
5275747-A-G 5407706-A-G FT17386 **
20426054-CAAAA-C 18264168-CAAAA-C P5_Dst 26×A**
22853774-T-C 20691888-T-C **
22471652-G-C 20309766-G-C DYZ19 **
22012368-A-G 19850482-A-G **
10825274-GCATTCCATTCCATTC-G **
14302784-G-A 12182078-G-A **
3261166-T-C 3393125-T-C **
13446677-T-A 11291001-T-A **
22457756-T-A 20295870-T-A BY13035 DYZ19 **
15324170-G-A 13212288-G-A **
22457752-A-AT 20295866-A-AT DYZ19 **
22457738-C-T 20295852-C-T BY25619 DYZ19 **
13706175-A-T 11550499-A-T BY33853 **
22426079-C-A 20264193-C-A DYZ19 **
13479186-T-A 11323510-T-A **
13479182-G-C 11323506-G-C **
13455067-T-A 11299391-T-A **
10631810-T-C **
13323808-G-C 11168132-G-C **
17270628-G-A 15158748-G-A **
13856446-T-G 11735740-T-G FT123909 **
8056645-A-AT 8188604-A-AT 9×T**
10982124-A-G **
16101996-C-CT 13990116-C-CT P8_Prx 19×T**
22457745-G-A 20295859-G-A A1199 BY13034 DYZ19 **
4031513-C-CA 4163472-C-CA 16×A**
20025431-TC-T 17913551-TC-T P5_Prx **
13717275-AGAATG-A 11561599-AGAATG-A 8×GAATG**
6008275-C-T 6140234-C-T **
22439585-G-T 20277699-G-T BY48559 DYZ19 **
4636107-ATAT-A 4768066-ATAT-A **
21929459-A-AAT 19767573-A-AAT **
9722500-G-GA 9884891-G-GA IR3_Prx 18×A**
14761100-TGATAGATA-T 12649169-TGATAGATA-T 12×GATA**
7008335-T-A 7140294-T-A A3701 **
13461696-T-C 11306020-T-C **
10759924-G-C FT150328 **
20893120-T-TG 18731234-T-TG P4_Dst **
13239673-G-T 11083997-G-T **
21371272-CT-C 19209386-CT-C 10×T***
23272342-TTTCT-T,TTTCC 21110456-TTTCT-T,TTTCC ***
18767321-A-G 16655441-A-G ***
59019241-G-A 56873094-G-A ***
2809540-ATTT-A 2941499-ATTT-A 18×T***
21966549-GTT-G 19804663-GTT-G 16×T***
13470504-G-T 11314828-G-T ***
14729689-TAA-T 12617757-TAA-T 12×A***
13530079-C-CA 11374403-C-CA 24×A***
3474543-C-CA 3606502-C-CA 15×A***
19138084-C-CTA,CTATA 17026204-C-CTA,CTATA 10×TA***
24408991-ACC-A,AC 22262844-ACC-A,AC 14×C***
3039839-CTTT-C 3171798-CTTT-C 22×T***
15518626-T-AG 13406746-T-AG ***
14266305-GTATA-G,GTA 12145599-GTATA-G,GTA 14×TA***
15157860-CAAA-C 13045947-CAA-C 21×A***
14760397-G-A 12648466-G-A ***
15015255-CTTTT-C 12903343-CTTTTT-C 24×T***
5523917-CTT-C 5655876-CTT-C 24×T***
6768762-GAAAA-G 6900721-GAAAA-G 17×A***
21120339-TAAA-T 18958453-TAAA-T 16×A***
13222389-G-C 11066713-G-C ***
4084268-GA-G 4216227-GA-G 11×A***
13489225-G-T 11333549-G-T BY86232 ***
28748453-T-A 26602306-T-A ***
28595604-T-C 26449457-T-C ***
19047531-GT-G 16935651-GT-G 12×T***
8400900-C-CT 8532859-C-CT 14×T***
18639018-A-AGT 16527138-A-AGT 26×GT***
21367782-C-A 19205896-C-A ***
13826145-AGGAAT-A 11705439-AGGAAT-A 10×GGAAT***
18354216-A-G 16242336-A-G BY40507 P6_Prx ***
19138058-C-CTA 17026178-C-CTA 10×TA***
14180006-G-T 12059300-G-T ***
22303170-G-A 20141284-G-A DYZ19 ***
18246301-G-A 16134421-G-A 14×AGAA***
22155197-G-C 19993311-G-C ***
13480509-C-A 11324833-C-A ***
13480496-A-T 11324820-A-T ***
21581019-T-C 19419133-T-C ***
3416561-C-A 3548520-C-A ***
4561016-A-G 4692975-A-G ***
3504585-G-T 3636544-G-T ***
13919208-CAAA-C 11798502-CAAA-C 17×A***
3370618-A-G 3502577-A-G ***
17946635-CT-C,CTT 15834755-CT-C,CTT 20×T***
2994613-G-GTT 3126572-G-GTT 14×T***
10982134-C-T ***
10982142-A-C ***
10982175-AGTCTA-G ***
5933233-CAAA-C 6065192-CAAA-C 18×A***
13461091-A-G 11305415-A-G ***
18738114-CT-C,CTT 16626234-CT-C,CTT 19×T***
13461033-C-T 11305357-C-T ***
13461078-A-C 11305402-A-C ***
10982110-T-A ***
13476330-A-C 11320654-A-C ***
3724177-T-G 3856136-T-G FT318260 ***
13458671-C-T 11302995-C-T ***
14420787-CTT-C,CT 12300062-CTT-C,CT 18×T***
15557033-C-CAAA 13445153-C-CAAA 18×A***
13476318-GC-G 11320642-GC-G ***
14747376-C-CA 12635445-C-CA 9×A***
14795080-CTTTTT-C,CTTT 12683151-CTTTTT-C,CTTT 24×T***
13450139-TTCCA-T 11294463-TTCCA-T ***
10982122-G-T ***
7346777-T-C 7478736-T-C ***
16665578-A-G 14553698-A-G ***
9340445-G-A 9502836-G-A ***
5878150-C-CT 6010109-C-CT 14×T***
13469967-G-A 11314291-G-A ***
13460276-A-G 11304600-A-G ***
5203779-TAAA-T 5335738-TAAA-T 24×A***
18890882-ATT-A 16779002-ATT-A 17×T***
10776504-T-C ***
13470100-C-A 11314424-C-A ***
16855372-TAA-T 14743492-TAA-T 17×A***
22739716-CAA-C 20577830-CAA-C 24×A***
7347074-T-C 7479033-T-C ***
15912055-CTTT-C 13800175-CTTT-C 21×T***
10755392-ATCTCT-A ***
15336707-CAA-C,CA 13224825-CAA-C,CA 20×A***
10980701-T-G ***
3641316-A-AT 3773275-A-AT 11×T***
10971227-CTCCATTCCAT-C ***
15497972-ATTTTT-A 13386092-ATTTTT-A 26×T***
7939472-TAAAAAAAAAAAA-T 8071431-TAAAAAAAAAAAA-T 35×A***
12376050-CTT-C ***
56848074-A-G ***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.

Age Analysis Information (work in progress)

AllMcDonaldYFull
Kit: 198981492381193563018306333
Used in age calculations1492381193563018306333
Counts of SNPs3127
Variant counts last updated 2022-07-24 03:12:25.



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