Griffith

BigY3: 310978
MDKA Birth: United States > Missouri

Tree Position

R-P312/S116 > Z46521 > Z46516 > ZZ11

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

Position Blocks Names Region McDonald BED combBED STRBigY3
310978
hg19:Y:25587254-T-A hg38:Y:23441107-T-A P1_gr1 A*
hg19:Y:13687188-G-A hg38:Y:11531512-G-A DYZ17 A*
hg19:Y:6142521-T-C hg38:Y:6274480-T-C IR3_Dst A*
hg19:Y:18286912-C-T hg38:Y:16175032-C-T P6_Prx A*
hg19:Y:19623257-T-C hg38:Y:17511377-T-C P5_Prx A*
hg19:Y:19683284-G-A hg38:Y:17571404-G-A P5_Prx A*
hg19:Y:19785671-T-C hg38:Y:17673791-T-C P5_Prx A*
hg19:Y:19834322-C-T hg38:Y:17722442-C-T P5_Prx A*
hg19:Y:22276741-T-A hg38:Y:20114855-T-A DYZ19 A*
hg19:Y:22276886-C-A hg38:Y:20115000-C-A DYZ19 A*
hg19:Y:24256087-A-G hg38:Y:22109940-A-G P3_b1 A*
hg19:Y:25112039-C-G hg38:Y:22965892-C-G g1 A*
hg19:Y:25967934-G-A hg38:Y:23821787-G-A P1_Y1 A*
hg19:Y:26098443-G-A hg38:Y:23952296-G-A P1_Y1 A*
hg19:Y:7266564-G-A hg38:Y:7398523-G-A Z23879 YY+
hg38:Y:10844682-A-C FT433792 +
hg38:Y:10844687-A-C FT433794 +
hg19:Y:27647621-C-T hg38:Y:25501474-C-T P1_Y2 +
hg38:Y:10844933-A-C FT433808 +
hg19:Y:18582545-C-T hg38:Y:16470665-C-T FT267503 YY+
hg19:Y:2778522-A-G hg38:Y:2910481-A-G FT272601 YY+
hg19:Y:3544771-G-A hg38:Y:3676730-G-A FT272731 +
hg19:Y:4530463-A-G hg38:Y:4662422-A-G FT272947 +
hg19:Y:5567114-G-C hg38:Y:5699073-G-C FT273153 +
hg19:Y:5995508-C-T hg38:Y:6127467-C-T FT273237 +
hg19:Y:6041817-A-G hg38:Y:6173776-A-G FT273247 +
hg19:Y:6699786-T-G hg38:Y:6831745-T-G FT273335 YY+
hg19:Y:6703893-C-T hg38:Y:6835852-C-T FT273337 YY+
hg19:Y:6719617-C-G hg38:Y:6851576-C-G FT273339 YY+
hg19:Y:7428555-C-A hg38:Y:7560514-C-A FT273473 YY+
hg19:Y:7530800-C-G hg38:Y:7662759-C-G FT273483 YY+
hg19:Y:8301936-T-C hg38:Y:8433895-T-C FT273638 YY+
hg19:Y:8391952-C-T hg38:Y:8523911-C-T FT46123 YY+
hg19:Y:8983810-G-A hg38:Y:9146201-G-A FT273743 +
hg19:Y:8991605-C-T hg38:Y:9153996-C-T FT273746 Y+
hg19:Y:9119915-G-A hg38:Y:9282306-G-A FT273769 Y+
hg19:Y:9903746-C-T hg38:Y:10066137-C-T FT273823 Y+
hg19:Y:9941952-C-T hg38:Y:10104343-C-T FT361954 Y+
hg38:Y:10844690-C-A FT433795 +
hg38:Y:10844915-TTCCTCGCAAC-T +
hg38:Y:10844957-C-G FT433809 +
hg38:Y:10863396-C-T FT434549 +
hg38:Y:11645638-G-A FT449864 DYZ17 +
hg19:Y:14003391-C-T hg38:Y:11882685-C-T FT273897 YY+
hg19:Y:14052510-T-C hg38:Y:11931804-T-C FT273911 YY+
hg19:Y:14082997-AT-A hg38:Y:11962291-AT-A 9×T+
hg19:Y:14249064-G-C hg38:Y:12128358-G-C FT273957 YY+
hg19:Y:14680235-C-G hg38:Y:12568301-C-G FT274044 Y+
hg19:Y:15211104-G-C hg38:Y:13099190-G-C FT274122 YY+
hg19:Y:15966249-A-G hg38:Y:13854369-A-G FT274253 YY+
hg19:Y:16346703-G-A hg38:Y:14234823-G-A FT274303 YY+
hg19:Y:17193869-A-G hg38:Y:15081989-A-G FT274457 YY+
hg19:Y:17241274-C-T hg38:Y:15129394-C-T FT274468 YY+
hg19:Y:17275249-A-T hg38:Y:15163369-A-T FT274472 YY+
hg19:Y:18029782-A-C hg38:Y:15917902-A-C FT274620 Y+
hg19:Y:18075131-C-T hg38:Y:15963251-C-T FT274632 YY+
hg19:Y:18150421-T-C hg38:Y:16038541-T-C FT274656 YY+
hg19:Y:18169154-A-T hg38:Y:16057274-A-T FT274662 YY+
hg19:Y:18612165-G-C hg38:Y:16500285-G-C BY195418 YY+
hg19:Y:18829051-C-G hg38:Y:16717171-C-G FT274735 YY+
hg19:Y:19038374-A-C hg38:Y:16926494-A-C FT274779 YY+
hg19:Y:19070412-C-A hg38:Y:16958532-C-A FT283390 YY+
hg19:Y:19267878-T-C hg38:Y:17155998-T-C FT274834 YY+
hg19:Y:19402507-A-G hg38:Y:17290627-A-G FT274858 YY+
hg19:Y:21230727-G-C hg38:Y:19068841-G-C FT274931 YY+
hg19:Y:21293622-TA-T hg38:Y:19131736-TA-T +
hg19:Y:21646885-G-A hg38:Y:19484999-G-A FT275023 YY+
hg19:Y:21676397-A-G hg38:Y:19514511-A-G FT275032 YY+
hg19:Y:22096598-A-G hg38:Y:19934712-A-G FT275107 YY+
hg19:Y:22293769-C-T hg38:Y:20131883-C-T FT455197 DYZ19 +
hg19:Y:22903883-G-A hg38:Y:20741997-G-A FT275201 YY+
hg19:Y:23338405-C-T hg38:Y:21176519-C-T FT275282 Y+
hg19:Y:24468633-T-C hg38:Y:22322486-T-C FT275400 Y+
hg38:Y:56872624-G-A +
hg19:Y:5833265-C-T hg38:Y:5965224-C-T *
hg38:Y:10899027-C-CTCCAT *
hg38:Y:11027933-A-ACCATTCCATT *
hg19:Y:15070614-CAAAAAAA-C hg38:Y:12958705-CAAAAAAA-C 20×A**
hg19:Y:5388088-CAA-C hg38:Y:5520047-CAA-C 13×A**
hg19:Y:5828966-AACACACACACAC-A hg38:Y:5960925-AACACACACACAC-A 22×AC**
hg19:Y:19881899-A-AG hg38:Y:17770019-A-AG P5_Prx **
hg19:Y:9400171-C-A hg38:Y:9562562-C-A FTA1790 **
hg19:Y:4557238-C-T hg38:Y:4689197-C-T **
hg19:Y:6271038-T-C hg38:Y:6402997-T-C IR3_Dst **
hg19:Y:14634153-CT-C hg38:Y:12522222-CT-C **
hg19:Y:2932474-A-G hg38:Y:3064433-A-G FTA1542 **
hg19:Y:3707211-G-A hg38:Y:3839170-G-A FTA2487 **
hg19:Y:4557230-C-T hg38:Y:4689189-C-T **
hg19:Y:4557231-C-T hg38:Y:4689190-C-T **
hg19:Y:4557241-C-T hg38:Y:4689200-C-T **
hg19:Y:5029161-G-T hg38:Y:5161120-G-T **
hg19:Y:5157239-C-T hg38:Y:5289198-C-T **
hg19:Y:5157240-C-T hg38:Y:5289199-C-T **
hg19:Y:14302655-A-G hg38:Y:12181949-A-G **
hg19:Y:14456586-G-C hg38:Y:12335859-G-C **
hg19:Y:15235947-AG-A hg38:Y:13124033-AG-A **
hg19:Y:16321609-CA-C hg38:Y:14209729-CA-C **
hg19:Y:16709545-G-T hg38:Y:14597665-G-T **
hg19:Y:17349490-C-A hg38:Y:15237610-C-A FTA1952 **
hg19:Y:17954102-C-T hg38:Y:15842222-C-T **
hg19:Y:18152272-A-C hg38:Y:16040392-A-C FTA2486 **
hg19:Y:18902280-C-T hg38:Y:16790400-C-T **
hg19:Y:21556919-CTTTTTTT-C hg38:Y:19395033-CTTTTTTT-C 23×T**
hg19:Y:21630453-T-G hg38:Y:19468567-T-G **
hg19:Y:21918151-T-C hg38:Y:19756265-T-C FTA2083 **
hg19:Y:22160896-T-A hg38:Y:19999010-T-A **
hg19:Y:15912055-C-T hg38:Y:13800175-C-T M12014 21×T***
hg19:Y:7139608-ATTTTT-A hg38:Y:7271567-ATTTTT-A 17×T***
hg19:Y:16242402-CTTTT-C,CTTT hg38:Y:14130522-CTTTT-C,CTTT 18×T***
hg19:Y:16581721-A-G hg38:Y:14469841-A-G ***
hg19:Y:18243329-CA-C hg38:Y:16131449-CA-C 8×A***
hg19:Y:5400504-G-T hg38:Y:5532463-G-T ***
hg19:Y:21617605-CAA-C,CA hg38:Y:19455719-CAA-C,CA 23×A***
hg19:Y:18539708-C-T hg38:Y:16427828-C-T ***
hg19:Y:13245596-A-T hg38:Y:11089920-A-T ***
hg19:Y:13455740-A-T hg38:Y:11300064-A-T ***
hg19:Y:8807421-T-C hg38:Y:8939380-T-C ***
hg19:Y:2975825-T-C hg38:Y:3107784-T-C ***
hg19:Y:3030643-G-A hg38:Y:3162602-G-A ***
hg19:Y:3508522-A-G hg38:Y:3640481-A-G ***
hg19:Y:4978656-A-G hg38:Y:5110615-A-G ***
hg19:Y:5204230-A-G hg38:Y:5336189-A-G ***
hg19:Y:5871886-G-A hg38:Y:6003845-G-A ***
hg19:Y:6089762-CTGT-C hg38:Y:6221721-CTGT-C ***
hg19:Y:6513725-T-C hg38:Y:6645684-T-C ***
hg19:Y:7514886-A-C hg38:Y:7646845-A-C ***
hg19:Y:8455390-A-G hg38:Y:8587349-A-G FTA1754 ***
hg38:Y:10925950-ACATTCCATTT-A,ACATTCCATTA ***
hg19:Y:13453200-GG-A,TG hg38:Y:11297524-GG-A,TG ***
hg19:Y:13476593-A-G,T hg38:Y:11320917-A-G,T ***
hg19:Y:13476593-ATCG-A hg38:Y:11320917-ATCG-A ***
hg19:Y:13476622-C-A hg38:Y:11320946-C-A ***
hg19:Y:14564875-C-A hg38:Y:12453075-C-A ***
hg19:Y:15749476-A-G hg38:Y:13637596-A-G ***
hg19:Y:16506766-C-CA,CAA hg38:Y:14394886-C-CA,CAA 19×A***
hg19:Y:16548221-G-T hg38:Y:14436341-G-T ***
hg19:Y:16548240-A-G hg38:Y:14436360-A-G ***
hg19:Y:16664023-A-G hg38:Y:14552143-A-G ***
hg19:Y:18868922-G-T hg38:Y:16757042-G-T ***
hg19:Y:18897923-A-G hg38:Y:16786043-A-G ***
hg19:Y:19059923-T-C hg38:Y:16948043-T-C ***
hg19:Y:19333229-ATTTTT-A,ATTT hg38:Y:17221349-ATTTTT-A,ATTT 21×T***
hg19:Y:21887812-C-T hg38:Y:19725926-C-T ***
hg19:Y:21961614-T-C hg38:Y:19799728-T-C ***
hg19:Y:22318807-A-T hg38:Y:20156921-A-T DYZ19 ***
hg19:Y:28596260-A-G hg38:Y:26450113-A-G ***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.

Age Analysis Information (work in progress)

AllMcDonaldYFull
Kit: 3109781463914292036048183924
Used in age calculations1463914292036048183924
Counts of SNPs3836
Variant counts last updated 2026-03-02 02:35:26.


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