Pastell

BigY3: 732803
MDKA Birth: Finland > Sääksmäki

Tree Position

R-P312/S116 > Z46521 > Z46516 > ZZ11 > U152/S28 > L2/S139

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

Position Blocks Names Region McDonald BED combBED STRBigY3
732803
hg19:Y:58975857-C-T hg38:Y:56829710-C-T A*
hg19:Y:5743219-C-T hg38:Y:5875178-C-T A*
hg38:Y:56833612-C-T A*
hg19:Y:13447997-A-T hg38:Y:11292321-A-T A*
hg38:Y:56834018-C-A A*
hg19:Y:13451576-T-A hg38:Y:11295900-T-A A*
hg19:Y:18274616-A-G hg38:Y:16162736-A-G P6_Prx A*
hg19:Y:19641848-A-G hg38:Y:17529968-A-G P5_Prx A*
hg19:Y:19658623-G-A hg38:Y:17546743-G-A P5_Prx A*
hg19:Y:20708953-A-C hg38:Y:18547067-A-C P4_Prx A*
hg19:Y:22310294-G-A hg38:Y:20148408-G-A DYZ19 A*
hg19:Y:23723993-A-T hg38:Y:21562107-A-T A*
hg19:Y:26035550-C-T hg38:Y:23889403-C-T P1_Y1 A*
hg19:Y:17169898-C-T hg38:Y:15058018-C-T FT157495 YY+
hg19:Y:18365541-A-G hg38:Y:16253661-A-G BY55072 P6_Prx 20×TG+
hg19:Y:3321123-G-C hg38:Y:3453082-G-C FT155650 +
hg19:Y:3344168-G-A hg38:Y:3476127-G-A FT155656 +
hg19:Y:3662920-T-G hg38:Y:3794879-T-G FT155731 +
hg19:Y:4511685-A-G hg38:Y:4643644-A-G FT155960 +
hg19:Y:4676572-C-T hg38:Y:4808531-C-T FT156009 +
hg19:Y:4989898-G-T hg38:Y:5121857-G-T FT156078 +
hg19:Y:5168133-T-C hg38:Y:5300092-T-C FT156104 +
hg19:Y:5230237-CT-C hg38:Y:5362196-CT-C +
hg19:Y:6000518-T-G hg38:Y:6132477-T-G FT156309 +
hg19:Y:6065855-T-C hg38:Y:6197814-T-C FT156326 +
hg19:Y:6368334-G-A hg38:Y:6500293-G-A FT156350 +
hg19:Y:7178340-C-T hg38:Y:7310299-C-T FT156504 YY+
hg19:Y:7709261-T-A hg38:Y:7841220-T-A FT156587 Y+
hg19:Y:8070103-G-A hg38:Y:8202062-G-A FT19622 YY+
hg19:Y:8308396-T-A hg38:Y:8440355-T-A FT156673 YY+
hg19:Y:8380426-G-T hg38:Y:8512385-G-T FT156685 YY+
hg19:Y:8463254-C-T hg38:Y:8595213-C-T YY+
hg19:Y:8850717-C-T hg38:Y:8982676-C-T FT156770 Y+
hg19:Y:9011378-G-A hg38:Y:9173769-G-A FT156801 Y+
hg19:Y:9488832-G-A hg38:Y:9651223-G-A FT156844 +
hg19:Y:9922475-T-G hg38:Y:10084866-T-G Y+
hg19:Y:13533957-G-C hg38:Y:11378281-G-C +
hg19:Y:13665103-G-A hg38:Y:11509427-G-A DYZ17 +
hg19:Y:14339181-A-G hg38:Y:12218476-A-G FT157016 YY+
hg38:Y:12376222-T-A FT89270 +
hg19:Y:14702110-A-T hg38:Y:12590176-A-T FT157103 YY+
hg19:Y:14946275-A-G hg38:Y:12834349-A-G FT157132 YY+
hg19:Y:15055828-TG-T hg38:Y:12943920-TG-T +
hg19:Y:15498826-C-T hg38:Y:13386946-C-T FT157215 YY+
hg19:Y:15549285-C-T hg38:Y:13437405-C-T BY159906 YY+
hg19:Y:16484604-A-G hg38:Y:14372724-A-G FT157379 YY+
hg19:Y:16496618-G-A hg38:Y:14384738-G-A FT157384 YY+
hg19:Y:16851503-G-C hg38:Y:14739623-G-C FT157437 YY+
hg19:Y:17171160-T-C hg38:Y:15059280-T-C FT157496 YY+
hg19:Y:17718422-T-A hg38:Y:15606542-T-A YY+
hg19:Y:17821815-A-C hg38:Y:15709935-A-C FT157630 YY+
hg19:Y:18217002-A-T hg38:Y:16105122-A-T FT157713 YY+
hg19:Y:19011490-G-A hg38:Y:16899610-G-A FT157820 YY+
hg19:Y:19432172-G-A hg38:Y:17320292-G-A FT157899 YY+
hg19:Y:21065404-C-G hg38:Y:18903518-C-G FT157929 YY+
hg19:Y:21164229-C-A hg38:Y:19002343-C-A FT157948 YY+
hg19:Y:21180093-G-C hg38:Y:19018207-G-C FT157952 YY+
hg19:Y:21309212-G-C hg38:Y:19147326-G-C FT157975 YY+
hg19:Y:21626617-G-A hg38:Y:19464731-G-A FT158041 YY+
hg19:Y:22236005-C-T hg38:Y:20074119-C-T FT453497 DYZ19 +
hg19:Y:22463107-G-A hg38:Y:20301221-G-A FT458144 DYZ19 +
hg19:Y:22699342-A-G hg38:Y:20537456-A-G FT158177 YY+
hg19:Y:23011208-T-C hg38:Y:20849322-T-C FT158239 YY+
hg19:Y:23185196-A-G hg38:Y:21023310-A-G FT158266 Y+
hg19:Y:23303091-AGAAGAAAGTTGCT-A hg38:Y:21141205-AGAAGAAAGTTGCT-A +
hg19:Y:23568117-G-T hg38:Y:21406231-G-T FT158333 YY+
hg19:Y:23575683-T-C hg38:Y:21413797-T-C FT158335 YY+
hg19:Y:15035213-G-GA hg38:Y:12923301-G-GA 10×A*
hg19:Y:17277520-CAT-C hg38:Y:15165640-CAT-C *
hg19:Y:13816627-GGGAAT-G hg38:Y:11695921-GGGAAT-G DYZ17 8×GGAAT*
hg38:Y:10689000-C-CTCCAT *
hg38:Y:10849819-T-TCATTC *
hg19:Y:16833655-T-TAC hg38:Y:14721775-T-TAC 17×AC*
hg19:Y:23792029-C-CTTT hg38:Y:21630143-C-CTTT 15×T*
hg38:Y:56857060-TAAAA-T,TAAA 13×A*
hg38:Y:10694083-T-C *
hg19:Y:19791432-A-T hg38:Y:17679552-A-T P5_Prx *
hg19:Y:20697068-G-T hg38:Y:18535182-G-T P4_Prx *
hg19:Y:22233980-CT-C hg38:Y:20072094-CT-C DYZ19 *
hg19:Y:22234110-G-C hg38:Y:20072224-G-C BY213606 DYZ19 *
hg19:Y:22278781-G-T hg38:Y:20116895-G-T DYZ19 *
hg19:Y:16627700-A-G hg38:Y:14515820-A-G Z79/S434BZ4603 **
hg19:Y:3563017-A-G hg38:Y:3694976-A-G **
hg19:Y:3563025-C-T hg38:Y:3694984-C-T FGC29552 **
hg19:Y:20711538-A-C hg38:Y:18549652-A-C P4_Prx **
hg19:Y:4378776-T-G hg38:Y:4510735-T-G **
hg19:Y:28441795-C-A hg38:Y:26295648-C-A P1_gr2 **
hg19:Y:18511260-C-A hg38:Y:16399380-C-A P6_Dst **
hg19:Y:13340794-C-T hg38:Y:11185118-C-T **
hg19:Y:4899748-A-C hg38:Y:5031707-A-C **
hg19:Y:7578080-A-AG hg38:Y:7710039-A-AG **
hg19:Y:8379252-T-C hg38:Y:8511211-T-C **
hg19:Y:9916248-T-C hg38:Y:10078639-T-C **
hg19:Y:13284703-A-G hg38:Y:11129027-A-G **
hg19:Y:13340801-A-G hg38:Y:11185125-A-G **
hg19:Y:13628110-T-C hg38:Y:11472434-T-C **
hg19:Y:13643130-AT-A hg38:Y:11487454-AT-A **
hg19:Y:15630797-A-G hg38:Y:13518917-A-G **
hg19:Y:16999376-A-G hg38:Y:14887496-A-G **
hg19:Y:21276230-A-T hg38:Y:19114344-A-T **
hg19:Y:22235859-C-A hg38:Y:20073973-C-A DYZ19 **
hg19:Y:22224825-C-A hg38:Y:20062939-C-A DYZ19 ***
hg19:Y:17277522-T-C hg38:Y:15165642-T-C BY24036 ***
hg19:Y:19397160-G-GAGAT hg38:Y:17285280-G-GAGAT 7×AGAT***
hg19:Y:22893304-C-CCTTTCTTTCTTT hg38:Y:20731418-C-CCTTTCTTTCTTT 17×CTTT***
hg19:Y:19479688-A-AGTGT hg38:Y:17367808-A-AGTGT 20×GT***
hg19:Y:17407418-GTATA-G hg38:Y:15295538-GTATA-G ***
hg19:Y:18454739-TTC-T hg38:Y:16342859-TTC-T P6_Dst ***
hg19:Y:5088451-CTTTT-C hg38:Y:5220410-CTTTT-C 27×T***
hg19:Y:18564316-CTT-C,CT hg38:Y:16452436-CTT-C,CT 19×T***
hg38:Y:21753379-C-A ***
hg19:Y:3522968-T-TAA hg38:Y:3654927-T-TAA 24×A***
hg19:Y:15865946-CTTTTTTTTTTTTTTT-C hg38:Y:13754066-CTTTTTTTTTTTTTTT-C 37×T***
hg19:Y:16904664-CAAAAAAAAAAAAAAA-C,CAAA hg38:Y:14792784-CAAAAAAAAAAAAAAA-C,CAAA 40×A***
hg19:Y:21890775-A-C hg38:Y:19728889-A-C ***
hg19:Y:22439311-G-T hg38:Y:20277425-G-T DYZ19 ***
hg19:Y:28796304-C-T hg38:Y:26650157-C-T ***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.

Age Analysis Information (work in progress)

AllMcDonaldYFull
Kit: 7328031512385094763648360157
Used in age calculations1512385094763648360157
Counts of SNPs3330
Variant counts last updated 2025-01-27 03:18:15.


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