Tree Position

R-P312/S116 > Z290 > L21/S145 > S552 > DF13 > DF21/S192 > FGC3213 > ZZ1 > S3058 > S424 > S426 > S190 > FGC3215 > ZZ23 > Y12464 > ZZ25 > Z17998 > Y16002 > Z17999 > Z18000 > 11815423-C-CAGA > Z29953 > BY3349

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19) POS-REF-ALT (hg38) Blocks Names Region McDonald BED combBED STRBigY3
27994
FTDNA
27994
BigY2
27994
20705952-T-C 18544066-T-C P4_Prx A****A*
24254964-G-A 22108817-G-A P3_b1 A****A*
18276499-T-G 16164619-T-G P6_Prx A*A*
2746186-G-A 2878145-G-A FT150340 YY++**
5402572-C-G 5534531-C-G FT386814 +
8288850-G-A 8420809-G-A **
8288845-G-A 8420804-G-A FT29188 **
5308799-TAGAGAG-T 5440758-TAGAGAG-T 19×AG**
13946139-C-A 11825433-C-A **
7615292-C-T 7747251-C-T Z25482 **
22263923-T-C 20102037-T-C BY1896 DYZ19 **
9094444-C-A 9256835-C-A **
26073058-CTGTG-C 23926911-CTGTG-C P1_Y1 14×TG**
58994005-C-A 56847858-C-A **
5703424-T-C 5835383-T-C **
9936442-C-A 10098833-C-A **
2729636-A-T 2861595-A-T **
2729648-C-T 2861607-C-T 25×T**
2745955-G-T 2877914-G-T **
2772526-A-AT 2904485-A-AT **
2973498-C-A 3105457-C-A **
3067092-A-G 3199051-A-G **
3067200-A-C 3199159-A-C **
3082411-A-G 3214370-A-G **
3082968-A-G 3214927-A-G **
3330235-C-A 3462194-C-A **
3331118-TA-T 3463077-TA-T **
3389766-C-A 3521725-C-A **
3413499-G-T 3545458-G-T **
3501241-T-C 3633200-T-C **
3505184-G-T 3637143-G-T **
3522367-G-T 3654326-G-T **
3594297-C-A 3726256-C-A **
3594362-T-C 3726321-T-C **
3681725-G-T 3813684-G-T **
3696480-G-T 3828439-G-T **
3804319-T-A 3936278-T-A **
3814922-G-A 3946881-G-A FT250680 **
3821981-C-A 3953940-C-A **
3833581-G-T 3965540-G-T **
3834565-T-A 3966524-T-A **
3866830-G-T 3998789-G-T **
3870556-C-A 4002515-C-A **
3870689-C-A 4002648-C-A **
3887580-G-T 4019539-G-T **
3896658-G-GA 4028617-G-GA 8×A**
3986141-T-A 4118100-T-A FTB18566 **
3986932-C-A 4118891-C-A **
3991933-C-A 4123892-C-A **
4010474-T-A 4142433-T-A **
4028291-C-A 4160250-C-A **
4030120-A-G 4162079-A-G **
4063956-T-C 4195915-T-C **
4069342-T-C 4201301-T-C **
4094262-C-A 4226221-C-A **
4179475-C-A 4311434-C-A **
4201865-C-A 4333824-C-A **
4226203-G-T 4358162-G-T **
4272642-C-A 4404601-C-A **
4331402-G-A 4463361-G-A **
4342906-G-T 4474865-G-T **
4342955-G-T 4474914-G-T **
4370918-C-A 4502877-C-A **
4416768-T-G 4548727-T-G **
4416865-C-A 4548824-C-A **
4420968-G-C 4552927-G-C **
4425497-A-G 4557456-A-G **
4431852-C-T 4563811-C-T **
4433358-T-G 4565317-T-G **
4544789-GA-G 4676748-GA-G 9×A**
4545076-TA-T 4677035-TA-T **
4605032-C-A 4736991-C-A **
4695160-G-T 4827119-G-T **
4703670-T-C 4835629-T-C **
4759862-C-A 4891821-C-A **
4838959-G-T 4970918-G-T **
4840113-T-G 4972072-T-G **
4873994-C-A 5005953-C-A **
4874279-T-C 5006238-T-C **
4908148-C-A 5040107-C-A **
4926356-G-T 5058315-G-T **
4932121-G-T 5064080-G-T **
4937039-C-A 5068998-C-A **
5045125-T-C 5177084-T-C **
5112703-G-T 5244662-G-T FT12090 **
5186664-A-G 5318623-A-G **
5187198-C-A 5319157-C-A **
5191758-C-A 5323717-C-A **
5201897-C-A 5333856-C-A **
5204597-C-A 5336556-C-A **
5248964-T-C 5380923-T-C **
5249063-G-T 5381022-G-T **
5294955-G-T 5426914-G-T **
5295177-G-T 5427136-G-T **
5295764-A-G 5427723-A-G **
5295782-A-G 5427741-A-G **
5310400-C-A 5442359-C-A **
5335885-T-A 5467844-T-A **
5346921-G-T 5478880-G-T **
5367687-C-A 5499646-C-A **
5381134-T-C 5513093-T-C **
5381142-G-T 5513101-G-T **
5381145-C-T 5513104-C-T **
5459932-C-A 5591891-C-A **
5524122-C-A 5656081-C-A **
5524917-CA-C 5656876-CA-C 9×A**
5534491-C-A 5666450-C-A **
5589703-C-A 5721662-C-A **
5607776-G-T 5739735-G-T **
5650254-G-T 5782213-G-T **
5658209-T-A 5790168-T-A **
5662501-C-A 5794460-C-A **
5683907-G-T 5815866-G-T **
5742790-C-A 5874749-C-A FT324935 **
5775753-A-G 5907712-A-G FT114670 **
5824955-T-C 5956914-T-C **
5852611-T-C 5984570-T-C **
5863062-G-T 5995021-G-T **
5924428-A-C 6056387-A-C **
5979570-G-T 6111529-G-T **
6092425-T-C 6224384-T-C FT352060 **
6148609-T-A 6280568-T-A IR3_Dst **
6275280-A-G 6407239-A-G IR3_Dst **
6277754-C-CTA 6409713-C-CTA IR3_Dst **
6303640-T-C 6435599-T-C IR3_Dst **
6460106-C-A 6592065-C-A **
6460136-C-A 6592095-C-A **
6541475-C-A 6673434-C-A FTA35611 17×AG**
6596315-T-C 6728274-T-C **
6756814-C-A 6888773-C-A **
6776132-C-A 6908091-C-A **
6790238-G-A 6922197-G-A **
6807095-C-G 6939054-C-G **
6828690-C-A 6960649-C-A **
6831928-C-A 6963887-C-A **
6911397-C-T 7043356-C-T **
6918527-C-T 7050486-C-T **
6977343-C-A 7109302-C-A **
7021058-A-G 7153017-A-G **
7030489-A-C 7162448-A-C **
7040961-C-T 7172920-C-T **
7053928-A-C 7185887-A-C **
7114468-TTCC-T 7246427-TTCC-T **
7114924-A-T 7246883-A-T **
7117292-C-T 7249251-C-T **
7186659-C-A 7318618-C-A **
7221452-C-A 7353411-C-A **
7243621-G-T 7375580-G-T **
7254698-A-T 7386657-A-T **
7296040-CA-C 7427999-CA-C 9×A**
7341406-C-A 7473365-C-A **
7342419-G-T 7474378-G-T **
7360567-T-TAA 7492526-T-TAA 13×A**
7424483-A-C 7556442-A-C **
7536407-C-T 7668366-C-T FGC15825 **
7536412-G-A 7668371-G-A **
7541505-C-T 7673464-C-T **
7572965-C-T 7704924-C-T **
7573009-T-C 7704968-T-C **
7645429-C-A 7777388-C-A **
7650390-C-A 7782349-C-A **
7897099-G-T 8029058-G-T **
7935851-C-A 8067810-C-A **
8016938-C-T 8148897-C-T 25×T**
8061859-C-A 8193818-C-A **
8090921-T-C 8222880-T-C Y85815 **
8181385-C-CG 8313344-C-CG **
8288855-G-A 8420814-G-A **
8314343-G-T 8446302-G-T **
8739633-T-G 8871592-T-G **
8807504-C-A 8939463-C-A **
9056468-A-C **
9403139-G-A 9565530-G-A **
9515000-C-A 9677391-C-A **
9908537-G-T 10070928-G-T **
9916041-G-C 10078432-G-C **
9936572-C-A 10098963-C-A **
9938649-C-A 10101040-C-A **
9979119-C-A 10141510-C-A **
9990986-C-A 10153377-C-A **
10011227-G-T 10173618-G-T **
10044100-C-A 10206491-C-A **
10046669-T-C 10209060-T-C **
10056967-T-A 10219358-T-A **
10067225-A-T 10229616-A-T **
10067227-T-TC 10229618-T-TC **
10070137-G-T 10232528-G-T **
10652901-A-G **
10664395-A-T **
10665754-A-T **
10665756-C-T **
10668855-C-A **
10684901-C-A **
10686770-G-T **
10691927-C-A **
10749319-C-A **
10749375-T-A **
10767131-C-T **
10767145-C-T **
10770296-C-T FT430439 **
10770301-A-C **
10770302-A-G **
10770308-C-A **
10770334-T-C **
10770346-C-A **
10783815-T-A **
10783819-T-C **
10783825-A-C **
10783828-C-G **
10783834-T-C **
10785309-A-C **
10785329-AATCCT-A **
10785736-C-A **
10785777-A-C **
10785796-C-T **
10785817-A-T **
10785840-C-CCATCG **
10790870-C-T **
10794301-T-TTCCAA **
10794339-G-T **
10806599-T-C **
10807140-C-A **
10815662-G-T **
10815708-T-C **
10833425-T-A **
10849301-C-A **
10849764-C-T **
10852780-A-T **
10857789-A-G FT434292 **
10858492-C-A **
10860288-T-C **
10860290-C-G **
10860295-C-A **
10860298-T-C **
10860300-C-CAA **
10860302-T-TC **
10860497-C-A **
10865432-C-A **
10868089-C-A **
10870101-C-T **
10875344-A-G FT371310 **
10878763-C-A **
10893338-C-G **
10893476-T-A **
10903516-T-C **
10915229-G-T **
10928240-A-T **
10928270-T-C **
10929409-A-G **
10935636-C-A **
10935645-T-G **
10935648-T-A **
10935656-G-T FT65931 **
10935663-C-T **
10935674-A-C **
10935677-A-C **
10935909-C-A **
10937647-T-C **
10937667-C-G **
10939377-C-T **
10947114-C-A **
10953199-C-A **
10963000-C-A **
10963220-T-C **
10967555-T-C **
10967557-A-G **
10969591-C-A **
10976066-C-A **
10976076-A-G **
10987659-C-A **
10991089-C-T **
10996282-C-A **
11008628-C-T **
11011941-A-T **
11011946-A-GTTCTG **
11022552-C-A **
11028141-A-G **
11032254-G-A **
11032255-G-A **
11032264-C-T **
11032267-C-T **
11032285-A-G **
13214166-C-A 11058490-C-A **
13226411-C-A 11070735-C-A **
13229803-C-A 11074127-C-A **
13237948-C-A 11082272-C-A **
13239802-A-T 11084126-A-T **
13244814-C-A 11089138-C-A **
13255261-C-A 11099585-C-A **
13268929-C-T 11113253-C-T **
13283076-C-A 11127400-C-A **
13315398-C-A 11159722-C-A **
13328884-C-A 11173208-C-A **
13330430-C-A 11174754-C-A **
13422833-C-A 11267157-C-A **
13427387-G-A 11271711-G-A **
13460756-G-T 11305080-G-T **
13504761-A-G 11349085-A-G **
13570672-C-A 11414996-C-A **
13579531-C-CA 11423855-C-CA 23×A**
13588291-G-C 11432615-G-C **
13596182-C-A 11440506-C-A **
13734346-A-G 11578670-A-G DYZ17 **
11655153-A-G DYZ17 **
11664792-A-G DYZ17 **
11668809-A-G DYZ17 **
11669738-C-A DYZ17 **
13850265-AGGAATGGAATGGAATGGAAT-A 11729559-AGGAATGGAATGGAATGGAAT-A DYZ17 15×GGAAT*****
13879963-G-T 11759257-G-T **
13891974-C-A 11771268-C-A **
13945952-C-A 11825246-C-A Z41397 Y27744 **
13948983-G-T 11828277-G-T **
13949287-G-A 11828581-G-A **
13997718-C-A 11877012-C-A **
14017410-C-A 11896704-C-A **
14053241-G-T 11932535-G-T **
14067130-C-A 11946424-C-A **
14168135-C-A 12047429-C-A **
14427243-C-A 12306518-C-A **
14432027-T-C 12311300-T-C **
14493373-C-A 12381570-C-A **
14493429-T-G 12381626-T-G **
14526618-T-G 12414819-T-G **
14531170-A-T 12419371-A-T **
14533337-C-A 12421538-C-A **
14605389-C-A 12493591-C-A **
14605948-G-A 12494150-G-A **
14608103-C-A 12496305-C-A **
14649385-C-A 12537450-C-A **
14676040-A-G 12564106-A-G **
14715364-G-T 12603431-G-T **
14716933-T-G 12605001-T-G **
14736308-C-A 12624376-C-A **
14960093-C-A 12848168-C-A **
14992664-G-A 12880749-G-A **
15080967-A-T 12969057-A-T **
15171446-T-C 13059532-T-C **
15179063-C-A 13067149-C-A **
15189554-C-A 13077640-C-A **
15210907-A-C 13098993-A-C **
15321328-GTTTTTTT-G 13209446-GTTTTTTT-G 25×T**
15424197-C-T 13312317-C-T FTB3289 **
15424205-G-A 13312325-G-A **
15424209-C-G 13312329-C-G **
15424243-A-T 13312363-A-T **
15442512-C-A 13330632-C-A **
15533575-C-A 13421695-C-A **
15606463-C-A 13494583-C-A **
15735636-A-C 13623756-A-C **
15745738-A-C 13633858-A-C **
15749247-C-A 13637367-C-A **
15788986-A-G 13677106-A-G **
15894430-C-A 13782550-C-A **
15922522-G-T 13810642-G-T **
16001625-C-G 13889745-C-G **
16004880-G-T 13893000-G-T **
16016134-G-T 13904254-G-T **
16029311-G-C 13917431-G-C **
16099815-T-A 13987935-T-A P8_Prx **
16099965-G-T 13988085-G-T P8_Prx **
16323349-G-C 14211469-G-C Y69662 **
16323353-C-T 14211473-C-T **
16354035-C-A 14242155-C-A **
16379241-C-A 14267361-C-A **
16427349-T-A 14315469-T-A **
16428995-T-C 14317115-T-C **
16465457-C-A 14353577-C-A **
16516293-C-T 14404413-C-T **
16636482-A-G 14524602-A-G **
16926154-C-T 14814274-C-T **
16930852-G-T 14818972-G-T **
17027450-G-C 14915570-G-C **
17065082-C-A 14953202-C-A **
17087975-C-A 14976095-C-A **
17137000-C-A 15025120-C-A **
17426714-A-G 15314834-A-G **
17503901-G-T 15392021-G-T **
17547857-C-A 15435977-C-A **
17601111-TG-T 15489231-TG-T **
17617224-C-A 15505344-C-A **
17886304-C-A 15774424-C-A **
17930848-C-A 15818968-C-A **
17963780-C-T 15851900-C-T **
18089194-A-C 15977314-A-C **
18188000-C-A 16076120-C-A **
18352072-T-G 16240192-T-G P6_Prx **
18401199-C-CAA 16289319-C-CAA P6_Gap 30×A**
18504915-G-T 16393035-G-T P6_Dst **
18580122-C-G 16468242-C-G **
18580187-A-G 16468307-A-G **
18626258-T-A 16514378-T-A **
18707318-C-A 16595438-C-A **
18789715-T-C 16677835-T-C **
18818121-C-A 16706241-C-A **
18869739-C-A 16757859-C-A **
18968486-A-G 16856606-A-G **
18968488-T-G 16856608-T-G **
18968497-T-C 16856617-T-C **
18968512-T-C 16856632-T-C **
18968519-G-A 16856639-G-A **
18968528-C-A 16856648-C-A **
19031390-T-G 16919510-T-G **
19031416-T-A 16919536-T-A **
19052346-T-A 16940466-T-A **
19052414-C-A 16940534-C-A 24×A**
19130770-TTG-T 17018890-TTG-T **
19417622-T-A 17305742-T-A **
19424782-T-C 17312902-T-C **
19448321-A-T 17336441-A-T **
19509980-C-A 17398100-C-A **
19558912-T-C 17447032-T-C **
19612067-A-T 17500187-A-T P5_Prx **
19740663-T-TC 17628783-T-TC P5_Prx **
19810374-T-A 17698494-T-A P5_Prx **
19820071-A-G 17708191-A-G P5_Prx **
20004011-C-A 17892131-C-A P5_Prx **
20084501-T-TC 17972621-T-TC P5_Dst **
20230153-A-AAG 18068267-A-AAG P5_Dst **
21042133-C-A 18880247-C-A **
21042201-TG-T 18880315-TG-T **
21072778-C-A 18910892-C-A **
21202092-G-T 19040206-G-T **
21208815-C-G 19046929-C-G **
21211240-T-C 19049354-T-C **
21323089-A-G 19161203-A-G **
21325532-C-A 19163646-C-A **
21350895-G-A 19189009-G-A **
21351270-A-G 19189384-A-G **
21351304-A-G 19189418-A-G **
21351317-T-G 19189431-T-G **
21362048-G-T 19200162-G-T **
21383258-C-A 19221372-C-A **
21386974-A-G 19225088-A-G **
21584110-G-T 19422224-G-T **
21602815-C-A 19440929-C-A **
21677427-C-A 19515541-C-A **
21681701-G-A 19519815-G-A **
21742952-C-G 19581066-C-G **
21880957-G-C 19719071-G-C **
21913792-T-C 19751906-T-C **
22050866-G-T 19888980-G-T **
22124383-T-A 19962497-T-A **
22181850-C-A 20019964-C-A **
22287088-C-T 20125202-C-T DYZ19 **
22345992-T-A 20184106-T-A DYZ19 **
22551221-A-G 20389335-A-G **
22668623-C-G 20506737-C-G **
22809343-C-A 20647457-C-A **
22809629-T-C 20647743-T-C **
22857464-T-G 20695578-T-G **
23062375-C-A 20900489-C-A **
23062419-C-A 20900533-C-A **
23084452-G-T 20922566-G-T **
23096855-A-T 20934969-A-T **
23127693-C-A 20965807-C-A **
23184407-T-A 21022521-T-A **
23321395-G-C 21159509-G-C **
23360915-A-G 21199029-A-G **
23372959-C-A 21211073-C-A **
23419273-C-A 21257387-C-A **
23425395-C-CA 21263509-C-CA **
23801717-G-A 21639831-G-A **
21753160-C-A **
21754068-G-A **
21780512-C-A **
23954089-A-G 21807942-A-G **
24148949-C-A 22002802-C-A P3_b1 **
24290759-A-ACG 22144612-A-ACG P3_t1 **
25524751-A-G 23378604-A-G P1_gr1 **
25733066-G-A 23586919-G-A P1_b3 **
25945186-T-G 23799039-T-G P1_Y1 **
26013010-T-TG 23866863-T-TG P1_Y1 **
26040885-A-G 23894738-A-G P1_Y1 **
26249267-A-T 24103120-A-T P1_Y1 **
26249387-A-AG 24103240-A-AG P1_Y1 **
26355301-C-T 24209154-C-T P1_Y1 **
26422573-G-T 24276426-G-T P1_Y1 **
26593012-C-A 24446865-C-A P1_g2 **
27607135-G-T 25460988-G-T P1_Y2 **
27935988-C-A 25789841-C-A P1_Y2 **
28432106-C-A 26285959-C-A P1_gr2 **
28471086-G-T 26324939-G-T **
28523929-G-T 26377782-G-T **
28535504-T-C 26389357-T-C **
28582915-C-A 26436768-C-A **
28649189-C-A 26503042-C-A **
28656236-C-A 26510089-C-A **
28688358-C-A 26542211-C-A **
28689279-C-A 26543132-C-A **
28699564-C-G 26553417-C-G **
28708944-C-A 26562797-C-A **
28724079-C-G 26577932-C-G **
28748690-G-T 26602543-G-T **
28776468-G-A 26630321-G-A **
56724792-T-G **
56724796-A-C **
56724798-G-C **
56724804-G-A **
56724812-T-C **
56724821-A-C **
56724823-G-C **
56724843-G-C **
56756814-G-C **
56845133-C-T **
56848601-A-T **
56848865-C-A **
56850627-C-A **
56850640-T-C **
56886054-C-A **
33970-G-A **
33974-C-T **
13468017-A-G 11312341-A-G **
13468033-G-A 11312357-G-A **
13468061-G-A 11312385-G-A **
13468063-T-A 11312387-T-A **
13468068-T-G 11312392-T-G **
13468087-G-T 11312411-G-T **
13459545-C-GGGTTA 11303869-C-GGGTTA **
13468879-G-C 11313203-G-C **
13468913-T-A 11313237-T-A **
13468926-CT-C 11313250-CT-C **
22263905-T-C 20102019-T-C DYZ19 **
19155235-A-G 17043355-A-G **
19892817-G-T 17780937-G-T P5_Prx **
19892812-C-A 17780932-C-A P5_Prx **
13459161-C-CGGATG 11303485-C-CGGATG **
3543133-C-A 3675092-C-A **
4076302-T-A 4208261-T-A **
5346444-C-A 5478403-C-A **
6009809-G-A 6141768-G-A **
9923823-G-A 10086214-G-A **
13365865-G-A 11210189-G-A **
13467998-G-T 11312322-G-T **
13481910-A-AT 11326234-A-AT **
15142869-C-T 13030956-C-T **
16683563-A-C 14571683-A-C **
16971933-G-A 14860053-G-A FT264311 **
18054748-T-C 15942868-T-C **
20568599-G-T 18406713-G-T P5_Dst **
20741891-C-A 18580005-C-A P4_Prx **
23006576-A-G 20844690-A-G **
25633825-T-A 23487678-T-A P1_b3 **
28568735-T-C 26422588-T-C **
22455366-G-T 20293480-G-T DYZ19 ***
7142104-C-T 7274063-C-T PF1517 CTS1009 ******
13489629-CCACCCA-C,GCAACC 11333953-CCACCCA-C,GCAACC ***
13450106-CCACTCCACCCCATCCCATCCCATTCTATTCCATTC-C,CCACTCCACTCCATTCCATTCCATTCCATTCCATTT 11294430-CCACTCCACCCCATCCCATCCCATTCTATTCCATTC-C,CCACTCCACTCCATTCCATTCCATTCCATTCCATTT ***
13447142-CATTCCATTCCATTCT-C,CATTCCATTCTATTCT 11291466-CATTCCATTCCATTCT-C,CATTCCATTCTATTCT ***
2798710-ATTTTT-A,ATTTTTT 2930669-ATTTTT-A,ATTTTTT 20×T***
2974294-TA-T 3106253-TA-T 9×A***
5213967-A-G 5345926-A-G ***
5537750-T-C 5669709-T-C ***
5867401-C-A 5999360-C-A ***
6699137-T-G 6831096-T-G ***
9171588-G-T 9333979-G-T ***
10691347-CATTCCATTCCATTCCATTCCATTCCA-C,CATTCCAATCCATTCCATTGCATTCCA ***
10757660-C-A ***
10785243-C-T ***
10785250-T-A ***
10785254-ATTCCG-A ***
11003753-C-CACTTG ***
13489597-C-A 11333921-C-A ***
13507157-G-C 11351481-G-C ***
13809441-A-G 11688735-A-G FT96304 DYZ17 ***
14184222-T-C 12063516-T-C ***
14266959-C-A 12146253-C-A ***
15374441-GT-G,GTT 13262561-GT-G,GTT 20×T***
15572586-GA-G 13460706-GA-G 9×A***
16848506-C-A 14736626-C-A ***
18848493-G-A 16736613-G-A ***
19183351-ATTT-A,ATT 17071471-ATTT-A,ATT 18×T***
21146275-CTTT-C,CTTTT 18984389-CTTT-C,CTTTT 17×T***
23544846-CTTT-C 21382960-CTTT-C 15×T***
56835402-AGTACA-A,AGTACG ***
16115-G-A ***
13468107-GC-G 11312431-GC-G ***
18147509-CTTTT-C 16035629-CTTTT-C 28×T***
13453432-T-A 11297756-T-A ***
17458930-ATT-A,AT 15347050-ATT-A,AT 17×T***
13468997-G-T 11313321-G-T ***
13468096-T-C 11312420-T-C ***
14620753-T-G 12508951-T-G ***
7160933-G-A 7292892-G-A ***
14146642-GTATA-G 12025936-GTATA-G 8×TA***
13468971-T-G 11313295-T-G ***
13166915-TTTATA-T 7×TTATA***
6074688-ATGTGTG-A 6206647-ATGTGTG-A 22×TG***
17604931-GTT-G,GTTT 15493051-GTT-G,GTTT 24×T***
2718881-CTTTT-C,CTTT 2850840-CTTTT-C,CTTT 21×T***
15919459-G-GT 13807579-G-GT 9×T***
13449749-CATTC-C,CATTA 11294073-CATTC-C,CATTA ***
19231319-CT-C,CTT 17119439-CT-C,CTT 24×T***
3125247-C-A 3257206-C-A ***
5225258-A-G 5357217-A-G ***
6146424-C-CTA 6278383-C-CTA IR3_Dst ***
13608647-CAAAAAAA-C,CAAAAAAAA 11452971-CAAAAAAA-C,CAAAAAAAA 27×A***
18119922-C-T 16008042-C-T ***
28522751-C-CT,CTT 26376604-C-CT,CTT 17×T***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.