Tree Position

R-P312/S116 > Z290 > L21/S145 > DF13 > ZZ10 > Z253 > BY4086 > FGC17436 > Z17693 > Exact position not yet finalized.

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19) POS-REF-ALT (hg38) Blocks Names Region McDonald BED combBED STRBigY3
B217357
3974210-A-G 4106169-A-G A+
26424801-C-T 24278654-C-T P1_Y1 A*
22313429-G-C 20151543-G-C DYZ19 A*
6325406-C-T 6457365-C-T IR3_Dst A*
3570989-G-C 3702948-G-C A*
4956928-A-G 5088887-A-G A*
13449164-G-GTTCCACTCCT 11293488-G-GTTCCACTCCT A*
56836956-A-C A*
13470189-G-T 11314513-G-T A*
6236109-C-T 6368068-C-T IR3_Dst A*
28816742-G-A 26670595-G-A A*
8470572-C-A 8602531-C-A YYA*
13448519-C-T 11292843-C-T A*
13451292-C-T 11295616-C-T A*
22257047-G-T 20095161-G-T DYZ19 A*
6308823-C-T 6440782-C-T IR3_Dst A*
22319713-G-T 20157827-G-T DYZ19 A*
26225239-G-A 24079092-G-A P1_Y1 A*
22290673-C-A 20128787-C-A DYZ19 A*
8756789-G-GA 8888748-G-GA 10×AA*
25993450-G-A 23847303-G-A P1_Y1 A*
25993431-A-G 23847284-A-G P1_Y1 A*
22339608-G-A 20177722-G-A DYZ19 A*
26188152-G-A 24042005-G-A P1_Y1 A*
9940581-A-G 10102972-A-G Y+
24367635-G-T 22221488-G-T FT232590 +
13924454-CA-C 11803748-CA-C +
10783677-G-T +
10618259-T-C +
9030546-G-T 9192937-G-T FT231173 Y+
9829595-A-G 9991986-A-G BY81273 YY+
9376080-A-T 9538471-A-T BY78879 Y+
8704228-GT-G 8836187-GT-G +
8343878-T-A 8475837-T-A FT231061 YY+
7021266-A-T 7153225-A-T FT230867 Y+
6391676-G-A 6523635-G-A +
13945481-G-A 11824775-G-A FT231286 Y+
14397452-A-C 12276748-A-C FT231399 YY+
14099020-T-C 11978314-T-C BY93021 YY+
23283784-G-T 21121898-G-T FT232502 YY+
23072264-G-T 20910378-G-T BY142780 YY+
21547372-G-T 19385486-G-T BY133717 YY+
21052551-C-G 18890665-C-G FT232181 YY+
19184399-A-G 17072519-A-G FT232095 Y+
19134532-G-A 17022652-G-A BY126605 YY+
23273699-C-T 21111813-C-T BY144280 YY+
19077124-A-G 16965244-A-G BY126058 YY+
23284004-A-C 21122118-A-C FT232503 YY+
22940675-G-T 20778789-G-T FT232449 YY+
18802490-A-T 16690610-A-T BY123948 YY+
17397113-C-T 15285233-C-T BY114436 YY+
16517581-A-T 14405701-A-T FT231684 YY+
15461788-T-G 13349908-T-G BY101732 YY+
15459627-CT-C 13347747-CT-C +
15341126-C-T 13229245-C-T BY100955 YY+
23795662-T-C 21633776-T-C BY147755 Y+
19050733-T-G 16938853-T-G BY125814 YY+
22440028-G-A 20278142-G-A Z18107Z4984 DYZ19 +
6134787-G-A 6266746-G-A FT230753 +
3906534-C-G 4038493-C-G FT230345 +
16809223-AAGAT-A 14697343-AAGAT-A 6×AGAT+
5253766-G-A 5385725-G-A FT33474 +
2978950-C-A 3110909-C-A FT230184 +
22299791-G-T 20137905-G-T BY216803 DYZ19 +
3898602-A-G 4030561-A-G FT230343 +
8377993-C-A 8509952-C-A FT231068 YY8×A+
4280939-GT-G 4412898-GT-G +
4443651-C-T 4575610-C-T FT230448 +
4919016-C-G 5050975-C-G FT230534 +
4824600-G-A 4956559-G-A FT16889 +
22319440-C-G 20157554-C-G DYZ19 *
6048371-T-TTG 6180330-T-TTG 12×TG*
9713326-G-GCA 9875717-G-GCA IR3_Prx 20×CA*
13488623-CT-C 11332947-CT-C *
10693889-C-T *
7103038-T-TAC 7234997-T-TAC 17×AC*
18346473-C-CTG 16234593-C-CTG P6_Prx 22×TG*
22278657-G-C 20116771-G-C DYZ19 *
13455121-TTTCCA-T 11299445-TTTCCA-T 8×TTCCA**
18106511-C-T 15994631-C-T BY120075 **
3999821-GTATATATATATATATATA-G 4131780-GTATATATATATATATATA-G 17×TA**
4763468-CA-C 4895427-CA-C 25×A**
22339840-A-G 20177954-A-G DYZ19 **
22339844-G-T 20177958-G-T DYZ19 **
22444895-G-T 20283009-G-T BY219503 DYZ19 **
22444917-C-G 20283031-C-G BY52661 DYZ19 **
22509573-G-A 20347687-G-A BY48022 DYZ19 **
28572203-A-AAT 26426056-A-AAT 13×AT**
23361100-G-A 21199214-G-A **
23380223-G-A 21218337-G-A BY144928 **
16818678-AT-A 14706798-AT-A BY616 **
17954554-A-T 15842674-A-T **
22509464-T-G 20347578-T-G BY225567 DYZ19 **
15893477-C-G 13781597-C-G **
3451858-C-G 3583817-C-G **
13348873-G-A 11193197-G-A **
9924116-G-C 10086507-G-C **
2888833-T-C 3020792-T-C **
13969866-A-T 11849160-A-T **
17136931-CT-C,CTT 15025051-CT-C,CTT 18×T***
13474039-G-C 11318363-G-C ***
4686573-CAA-C 4818532-CAA-C 15×A***
10955195-C-G ***
23364087-CAA-C,CAAA 21202201-CAA-C,CAAA 16×A***
14097945-AT-A,ATT 11977239-AT-A,ATT 23×T***
10026998-T-C 10189389-T-C ***
13588427-G-A 11432751-G-A ***
9991636-C-A 10154027-C-A ***
24379059-T-C 22232912-T-C ***
4993786-ATG-A 5125745-ATG-A 10×TG***
5214585-G-A 5346544-G-A ***
13474048-T-C 11318372-T-C ***
13611782-C-A 11456106-C-A ***
22316180-C-A 20154294-C-A DYZ19 ***
21454204-CAAAA-C 19292318-CAAAA-C 18×A***
5289092-C-T 5421051-C-T ***
7002315-G-A 7134274-G-A ***
56841435-A-T ***
18390083-CAA-C,CAAA 16278203-CAA-C,CAAA P6_Gap 19×A***
14771649-CTTTT-C,CTTTTT 12659718-CTTTT-C,CTTTTT 17×T***
7409901-T-TAA 7541860-T-TAA 19×A***
4174030-TA-T 4305989-TA-T 9×A***
2649802-CAAAA-C,CAA 2781761-CAAAA-C,CAA 24×A***
26262553-C-A 24116406-C-A P1_Y1 ***
19554558-T-C 17442678-T-C ***
13476563-G-C 11320887-G-C ***
21988863-A-G 19826977-A-G ***
13476567-C-G 11320891-C-G ***
22275782-G-C 20113896-G-C DYZ19 ***
5273214-CTT-C,CT 5405173-CTT-C,CT 23×T***
22275733-T-A 20113847-T-A FGC27627 DYZ19 ***
28613771-CTTT-C 26467624-CTTT-C 16×T***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.

Age Analysis Information (work in progress)

AllMcDonaldYFull
Kit: B2173571493435893639628285368
Used in age calculations1493435893639628285368
Counts of SNPs2623
Variant counts last updated 2020-03-07 02:47:32.



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