Tree Position

R-P312/S116 > Z40481 > DF99/S11987 > FGC16982 > S23540 > FGC16979 > FGC16997

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19) POS-REF-ALT (hg38) Blocks Names Region McDonald BED combBED STRFGC
14009605-G-A 11888899-G-A FGC17010 YY+
7974123-G-A 8106082-G-A FGC17001 YY+
14690754-C-A 12578820-C-A FGC17013 Y+
5117777-A-G 5249736-A-G FGC16992 +
9472117-C-T 9634508-C-T FGC17004 +
14256190-A-T 12135484-A-T FGC17012 Y+
7942931-A-G 8074890-A-G FGC17000 YY+
5691438-A-T 5823397-A-T FGC16994 +
3814092-G-C 3946051-G-C FGC16986 +
3770505-C-A 3902464-C-A FGC16985 +
3082582-C-T 3214541-C-T FGC16984 +
4486061-TG-T 4618020-TG-T +
13490937-C-T 11335261-C-T FGC17007 +
17175159-C-A 15063279-C-A FGC17025 YY+
21108961-C-G 18947075-C-G FGC17030 Y+
15759084-T-A 13647204-T-A FGC17021 Y+
3044658-CT-C 3176617-CT-C +
13426756-T-G 11271080-T-G FGC17006 +
13132270-A-G 10621756-A-G FGC17005 +
5322092-A-G 5454051-A-G FGC16993 +
19029742-A-G 16917862-A-G FGC17028 Y*
4644268-C-G 4776227-C-G FGC16989 *
4644523-G-T 4776482-G-T FGC16990 *
8002604-G-A 8134563-G-A FGC17002 YY*
16757043-A-ATTT 14645163-A-ATTT 27×T**
7461074-C-G 7593033-C-G IR1_L **
4275205-G-A 4407164-G-A **
3137645-G-A 3269604-G-A **
22222422-A-G 20060536-A-G DYZ19 **
13218966-C-CAAAA 11063290-C-CAAAA 21×A**
7142509-G-A 7274468-G-A **
24264513-CTTTT-C 22118366-CTTTT-C P3_b1 18×T**
7461099-C-G 7593058-C-G IR1_L **
22365766-C-G 20203880-C-G DYZ19 **
18914179-T-TAC 16802299-T-TAC 13×AC**
9304399-G-A 9466790-G-A **
28336668-C-CAAAAAAA 26190521-C-CAAAAAAA P1_b4 31×A**
22693660-A-C 20531774-A-C Y43905 **
26228689-C-CTTTTTTTTTT 24082542-C-CTTTTTTTTTT P1_Y1 27×T**
15247723-G-T 13135809-G-T **
7461149-C-G 7593108-C-G IR1_L **
3205858-C-CAAA 3337817-C-CAAA 15×A***
9438099-C-CTTTTTT 9600490-C-CTTTTTT 30×T***
9343983-CTGTGCCG-C 9506374-CTGTGCCG-C ***
3587292-C-CTTTTTTT 3719251-C-CTTTTTTT 22×T***
3838601-C-CGTTTTTT 3970560-C-CGTTTTTT 31×T***
4377969-C-TT 4509928-C-TT 19×T***
8535204-G-GTTTTT 8667163-G-GTTTTT 19×T***
7033238-TACA-AAC 7165197-TACA-AAC ***
4537586-CTTTT-C 4669545-CTTTT-C 21×T***
7534643-C-CAAAAA 7666602-C-CAAAAA 17×A***
5130497-G-GT 5262456-G-GT 24×T***
58913135-G-T 56677736-C-A ***
6929131-GC-T 7061090-GC-T ***
5999363-C-CAAAAAAA 6131322-C-CAAAAAAA 20×A***
5453891-C-CTTTTT 5585850-C-CTTTTT 19×T***
5886175-CTT-C 6018134-CTT-C 19×T***
5512875-C-CAAAAAAA 5644834-C-CAAAAAAA 22×A***
13256865-T-TTTG 11101189-T-TTTG ***
58904162-T-G 56686709-A-C ***
58909090-G-C 56681781-C-G ***
27282347-A-T 25136200-A-T P1_g3 ***
27282392-A-G 25136245-A-G P1_g3 ***
27282389-T-C 25136242-T-C P1_g3 ***
27282385-C-T 25136238-C-T P1_g3 ***
27282372-G-A 25136225-G-A P1_g3 ***
27282371-A-T 25136224-A-T P1_g3 ***
27282370-A-C 25136223-A-C P1_g3 ***
27282367-T-G 25136220-T-G P1_g3 ***
27282363-C-T 25136216-C-T P1_g3 ***
27282349-A-C 25136202-A-C P1_g3 ***
27282348-C-T 25136201-C-T P1_g3 ***
27282345-A-C 25136198-A-C P1_g3 ***
27367796-A-T 25221649-A-T P1_g3 ***
27282342-A-T 25136195-A-T P1_g3 ***
27282340-G-C 25136193-G-C P1_g3 ***
27282336-G-T 25136189-G-T P1_g3 ***
27281219-A-T 25135072-A-T P1_g3 ***
26921998-T-C 24775851-T-C P1_r3 ***
26310816-G-T 24164669-G-T P1_Y1 ***
26114870-G-T 23968723-G-T P1_Y1 ***
26114868-A-C 23968721-A-C P1_Y1 ***
26114867-G-T 23968720-G-T P1_Y1 ***
25651212-G-A 23505065-G-A P1_b3 ***
25567713-C-T 23421566-C-T P1_gr1 ***
27282398-A-G 25136251-A-G P1_g3 ***
28058640-G-A 25912493-G-A P1_Y2 ***
58909085-T-C 56681786-A-G ***
58848446-A-T 56742425-T-A ***
58908660-G-C 56682211-C-G ***
58904212-A-G 56686659-T-C ***
58904199-T-G 56686672-A-C ***
58877024-A-G 56713847-T-C ***
58876996-T-A 56713875-A-T ***
58872935-T-C 56717936-A-G ***
58866263-T-C 56724608-A-G ***
58866262-A-C 56724609-T-G ***
58859243-A-T 56731628-T-A ***
58848465-G-C 56742406-C-G ***
58848437-C-G 56742434-G-C ***
28058722-C-A 25912575-C-A P1_Y2 ***
58847870-T-C 56743001-A-G ***
58847228-T-A 56743643-A-T ***
58847227-T-A 56743644-A-T ***
58844639-T-C 56746232-A-G ***
58836461-C-T 56754410-G-A ***
58836447-T-G 56754424-A-C ***
58836446-C-T 56754425-G-A ***
58836427-C-A 56754444-G-T ***
58836406-T-C 56754465-A-G ***
58824858-G-T 56766013-C-A ***
28791397-G-T 26645250-G-T ***
9943885-ATTA-TTTG 10106276-ATTA-TTTG ***
18362512-ACTAGG-GCAAAA 16250632-ACTAGG-GCAAAA P6_Prx ***
13104555-A-ATCT 10594041-A-ATCT ***
25317070-TAAAAAAAAA-T 23170923-TAAAAAAAAA-T P2_r1 21×A***
24618779-T-TG 22472632-T-TG P3_t2 ***
24408991-A-ACCCCC 22262844-A-ACCCCC 14×C***
24023663-CACA-TACG 21877516-CACA-TACG ***
23831252-C-CTTT 21669366-C-CTTT 26×T***
22949878-CTTTTTTT-C 20787992-CTTTTTTT-C 23×T***
22936288-CTTTTTTT-C 20774402-CTTTTTTT-C 25×T***
22849491-CTTTTTTT-C 20687605-CTTTTTTT-C 20×T***
22421067-CT-GTG 20259181-CT-GTG DYZ19 ***
26114867-GATG-TCTT 23968720-GATG-TCTT P1_Y1 ***
22365758-GT-G 20203872-GT-G DYZ19 ***
22360131-TTTTT-GTTTG 20198245-TTTTT-GTTTG DYZ19 ***
22359958-CGAA-AGAC 20198072-CGAA-AGAC DYZ19 ***
22359945-AG-CT 20198059-AG-CT DYZ19 ***
22344872-ACTC-G 20182986-ACTC-G DYZ19 ***
22329844-CT-AA 20167958-CT-AA DYZ19 ***
22324973-GTCT-AAAA 20163087-GTCT-AAAA DYZ19 ***
25592896-CTCTC-ATATA 23446749-CTCTC-ATATA P1_gr1 ***
26124427-C-CAAAAAAA 23978280-C-CAAAAAAA P1_Y1 31×A***
19668782-T-TAAAAAA 17556902-T-TAAAAAA P5_Prx 33×A***
58909164-AGCGGA-G 56681702-TCCGCT-C ***
58877015-GAC-CAT 56713854-GTC-ATG ***
58877007-TTT-CTC 56713862-AAA-GAG ***
58836452-CG-AT 56754418-CG-AT ***
58836442-GACTCT-AATTTG 56754424-AGAGTC-CAAATT ***
58834345-TG-T 56756524-AC-A ***
28253491-C-CAAAAAAAAAA 26107344-C-CAAAAAAAAAA P1_b4 32×A***
27413477-ATCCTC-A 25267330-ATCCTC-A P1_g3 ***
27413474-GC-G 25267327-GC-G P1_g3 ***
27282355-AGGAAC-A 25136208-AGGAAC-A P1_g3 ***
27282336-GG-TGTT 25136189-GG-TGTT P1_g3 ***
27282328-TTCCTG-T 25136181-TTCCTG-T P1_g3 ***
26437169-C-CAAA 24291022-C-CAAA P1_Y1 28×A***
22307195-GT-CG 20145309-GT-CG DYZ19 ***
22297330-AGTGTTAC-A 20135444-AGTGTTAC-A DYZ19 ***
13242241-C-CTTTTTT 11086565-C-CTTTTTT 21×T***
19231319-C-CTTTTTT 17119439-C-CTTTTTT 24×T***
19918169-TACCCTT-GA 17806289-TACCCTT-GA P5_Prx ***
19918164-T-TA 17806284-T-TA P5_Prx ***
19918158-TCCTA-T 17806278-TCCTA-T P5_Prx ***
19918095-GA-AT 17806215-GA-AT P5_Prx ***
19744991-ATTTTTTTT-A 17633111-ATTTTTTTT-A P5_Prx 23×T***
19202763-TAC-AAA 17090883-TAC-AAA ***
20294371-TGT-AG 18132485-TGT-AG P5_Dst ***
24618802-T-C 22472655-T-C P3_t2 ***
17130400-CTTTT-C 15018520-CTTTT-C 21×T***
15865946-C-CTT 13754066-C-CTT 37×T***
15374441-G-GTTTTTTTT 13262561-G-GTTTTTTTT 20×T***
14425195-CAAA-C 12304470-CAAA-C 15×A***
13475908-TT-AG 11320232-TT-AG ***
13467153-CT-C 11311477-CT-C ***
13257299-TTT-ATA 11101623-TTT-ATA ***
20116664-A-AAGCT 18004784-A-AAGCT P5_Dst ***
20294372-GT-G 18132486-GT-G P5_Dst ***
22297318-ACCTTTACGGT-A 20135432-ACCTTTACGGT-A DYZ19 ***
22297315-CA-C 20135429-CA-C DYZ19 ***
22289494-CTAACA-GTTCCT 20127608-CTAACA-GTTCCT DYZ19 ***
22289475-AC-GT 20127589-AC-GT DYZ19 ***
22267245-TT-GG 20105359-TT-GG DYZ19 ***
22245099-ACATA-GCACT 20083213-ACATA-GCACT DYZ19 ***
22236781-CCGA-GG 20074895-CCGA-GG DYZ19 ***
22236762-CT-AG 20074876-CT-AG DYZ19 ***
22235037-AGATGG-TGAAGA 20073151-AGATGG-TGAAGA DYZ19 ***
22231993-ACC-A 20070107-ACC-A DYZ19 ***
20368153-TTTTC-CTTTT 18206267-TTTTC-CTTTT P5_Dst ***
22231965-C-CT 20070079-C-CT DYZ19 ***
22231958-TAAAGG-T 20070072-TAAAGG-T DYZ19 ***
21922080-CAAAAAAA-C 19760194-CAAAAAAA-C 23×A***
21464536-C-CAAAAAA 19302650-C-CAAAAAA 19×A***
20574360-GG-AA 18412474-GG-AA P5_Dst ***
24649926-A-T 22503779-A-T P3_b2 ***
22420751-T-C 20258865-T-C DYZ19 ***
24618792-C-G 22472645-C-G P3_t2 ***
58866260-G-T 56724611-C-A ***
22354955-C-G 20193069-C-G DYZ19 ***
22250468-CA-C 20088582-CA-C DYZ19 ***
13467129-C-A 11311453-C-A ***
13734082-T-G 11578406-T-G ***
13697725-G-A 11542049-G-A ***
22505135-CG-AA 20343249-CG-AA DYZ19 ***
22505127-AG-CT 20343241-AG-CT DYZ19 ***
22248286-ACAA-GCAG 20086400-ACAA-GCAG DYZ19 ***
22354954-CC-GG 20193068-CC-GG DYZ19 ***
13203843-ACC-GTG 11048167-ACC-GTG ***
22328421-T-G 20166535-T-G DYZ19 ***
22292962-TG-GT 20131076-TG-GT DYZ19 ***
22365862-C-A 20203976-C-A DYZ19 ***
22367102-T-G 20205216-T-G DYZ19 ***
22367094-A-G 20205208-A-G DYZ19 ***
22324765-A-C 20162879-A-C DYZ19 ***
20574355-G-A 18412469-G-A P5_Dst ***
58848445-T-C 56742426-A-G ***
58833107-G-C 56757764-C-G ***
20368176-G-A 18206290-G-A P5_Dst ***
6388612-C-A 6520571-C-A ***
10084452-G-T 10246843-G-T ***
10059006-A-T 10221397-A-T ***
10047237-C-A 10209628-C-A ***
9781755-C-A 9944146-C-A ***
9191036-C-A 9353427-C-A ***
7497138-A-T 7629097-A-T IR1_L ***
7481792-A-T 7613751-A-T IR1_L ***
7461124-C-G 7593083-C-G IR1_L ***
6299851-T-A 6431810-T-A IR3_Dst ***
13475896-A-G 11320220-A-G ***
6299845-A-C 6431804-A-C IR3_Dst ***
4860930-C-T 4992889-C-T ***
4021380-G-A 4153339-G-A ***
3403260-C-A 3535219-C-A ***
22426393-C-T 20264507-C-T DYZ19 ***
10101396-T-C 10263787-T-C ***
25288792-C-A 23142645-C-A P2_r1 ***
19702973-C-A 17591093-C-A P5_Prx ***
58823348-ATTCA-GATC 56767519-TGAAT-GATC ***
22354889-C-T 20193003-C-T DYZ19 ***
10090653-A-C 10253044-A-C ***
20368153-T-C 18206267-T-C P5_Dst ***
20368175-G-A 18206289-G-A P5_Dst ***
20368174-G-A 18206288-G-A P5_Dst ***
20368170-G-A 18206284-G-A P5_Dst ***
20368169-T-C 18206283-T-C P5_Dst ***
20368166-C-A 18206280-C-A P5_Dst ***
20368163-T-A 18206277-T-A P5_Dst ***
20368162-A-G 18206276-A-G P5_Dst ***
20368157-C-T 18206271-C-T P5_Dst ***
20367933-G-C 18206047-G-C P5_Dst ***
20368186-T-G 18206300-T-G P5_Dst ***
20367892-C-T 18206006-C-T P5_Dst ***
22421711-A-G 20259825-A-G DYZ19 ***
2729648-C-CTTTT 2861607-C-CTTTT 25×T***
58908655-T-C 56682216-A-G ***
58877000-A-C 56713871-T-G ***
22332813-C-A 20170927-C-A DYZ19 ***
17733553-T-TAATA 15621673-T-TAATA 11×AATA***
20368177-T-C 18206291-T-C P5_Dst ***
20368187-A-C 18206301-A-C P5_Dst ***
13484531-A-T 11328855-A-T ***
22309523-AGAA-CTAG 20147637-AGAA-CTAG DYZ19 ***
13140964-CATTT-C 10630450-CATTT-C ***
20574409-C-T 18412523-C-T P5_Dst ***
20574391-A-G 18412505-A-G P5_Dst ***
20574379-T-C 18412493-T-C P5_Dst ***
13485180-A-G 11329504-A-G ***
22364494-G-A 20202608-G-A DYZ19 ***
9403521-G-GTTTTT 9565912-G-GTTTTT 21×T***
22366782-A-T 20204896-A-T DYZ19 ***
22309498-CAGGA-AAGGT 20147612-CAGGA-AAGGT DYZ19 ***
20368190-A-G 18206304-A-G P5_Dst ***
20367939-TCT-AC 18206053-TCT-AC P5_Dst ***
22366557-G-T 20204671-G-T DYZ19 ***
20368196-GT-G 18206310-GT-G P5_Dst ***
20368186-TACCAA-GCCCGT 18206300-TACCAA-GCCCGT P5_Dst ***
20367923-ATCTA-TTCTC 18206037-ATCTA-TTCTC P5_Dst ***
20367899-AACA-GACT 18206013-AACA-GACT P5_Dst ***
20368200-A-T 18206314-A-T P5_Dst ***
20368191-A-T 18206305-A-T P5_Dst ***
10089916-T-A 10252307-T-A ***
10094799-T-C 10257190-T-C ***
24618786-G-A 22472639-G-A P3_t2 ***
22309426-G-A 20147540-G-A DYZ19 ***
22342828-G-A 20180942-G-A DYZ19 ***
22332853-A-T 20170967-A-T DYZ19 ***
22330022-T-C 20168136-T-C DYZ19 ***
22329834-G-A 20167948-G-A DYZ19 ***
22324979-T-C 20163093-T-C DYZ19 ***
22324806-G-T 20162920-G-T DYZ19 ***
22324785-A-T 20162899-A-T DYZ19 ***
22324778-A-G 20162892-A-G DYZ19 ***
22309414-C-A 20147528-C-A DYZ19 ***
22352349-C-G 20190463-C-G DYZ19 ***
22297311-G-C 20135425-G-C DYZ19 ***
22292963-G-T 20131077-G-T DYZ19 ***
22292962-T-G 20131076-T-G DYZ19 ***
22292230-C-A 20130344-C-A DYZ19 ***
22291970-T-G 20130084-T-G DYZ19 ***
22273608-G-C 20111722-G-C DYZ19 ***
22265946-C-T 20104060-C-T DYZ19 ***
22245087-T-G 20083201-T-G DYZ19 ***
22349448-G-A 20187562-G-A DYZ19 ***
22352356-C-T 20190470-C-T DYZ19 ***
22232313-G-A 20070427-G-A DYZ19 ***
22481279-C-T 20319393-C-T DYZ19 ***
24583326-G-A 22437179-G-A P3_t2 ***
24023674-A-T 21877527-A-T ***
23714317-G-A 21552431-G-A ***
23110419-G-T 20948533-G-T ***
22504562-A-C 20342676-A-C DYZ19 ***
22503954-T-A 20342068-T-A DYZ19 ***
22495804-A-T 20333918-A-T DYZ19 ***
22486267-G-C 20324381-G-C DYZ19 ***
22421955-C-T 20260069-C-T DYZ19 ***
22356849-G-T 20194963-G-T DYZ19 ***
22420878-A-T 20258992-A-T DYZ19 ***
22420854-A-T 20258968-A-T DYZ19 ***
22420761-T-G 20258875-T-G DYZ19 ***
22420754-A-T 20258868-A-T DYZ19 ***
22420497-C-T 20258611-C-T DYZ19 ***
22367055-G-A 20205169-G-A DYZ19 ***
22365684-T-A 20203798-T-A DYZ19 ***
22360038-C-G 20198152-C-G DYZ19 ***
22245080-A-C 20083194-A-C DYZ19 ***
22231957-G-C 20070071-G-C DYZ19 ***
10094805-G-A 10257196-G-A ***
13484562-A-C 11328886-A-C ***
18008636-A-G 15896756-A-G P7_Dst ***
15294057-T-C 13182156-T-C ***
13876555-G-A 11755849-G-A ***
13734801-G-A 11579125-G-A ***
13734791-G-A 11579115-G-A ***
13580611-C-T 11424935-C-T ***
13548665-T-A 11392989-T-A ***
13484598-T-A 11328922-T-A ***
13484537-G-A 11328861-G-A ***
19702982-G-A 17591102-G-A P5_Prx ***
13319707-C-T 11164031-C-T ***
13276381-C-T 11120705-C-T ***
13257299-T-A 11101623-T-A ***
13222711-A-T 11067035-A-T ***
13126110-G-T 10615596-G-T ***
13126099-C-T 10615585-C-T ***
13126081-T-A 10615567-T-A ***
13114388-T-A 10603874-T-A ***
19702979-C-T 17591099-C-T P5_Prx ***
19793903-G-A 17682023-G-A P5_Prx ***
22227834-T-A 20065948-T-A DYZ19 ***
20202718-A-T 18040832-A-T P5_Dst ***
22227794-T-G 20065908-T-G DYZ19 ***
22226575-T-C 20064689-T-C DYZ19 ***
22223429-G-T 20061543-G-T DYZ19 ***
21170602-G-T 19008716-G-T ***
20704442-C-A 18542556-C-A P4_Prx ***
20574344-A-T 18412458-A-T P5_Dst ***
20294377-A-G 18132491-A-G P5_Dst ***
20202720-C-T 18040834-C-T P5_Dst ***
20116662-A-C 18004782-A-C P5_Dst ***
19793908-C-A 17682028-C-A P5_Prx ***
20011818-T-C 17899938-T-C P5_Prx ***
20011796-C-A 17899916-C-A P5_Prx ***
20011727-G-A 17899847-G-A P5_Prx ***
20011707-G-A 17899827-G-A P5_Prx ***
19918189-T-A 17806309-T-A P5_Prx ***
19793920-G-C 17682040-G-C P5_Prx ***
19793915-G-C 17682035-G-C P5_Prx ***
19793913-A-G 17682033-A-G P5_Prx ***
26204619-G-GGTTTTTTAAAA 24058472-G-GGTTTTTTAAAA P1_Y1 ***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.

Age Analysis Information (work in progress)

Kit: FB8X3*16000000100000008300000
Used in age calculations16000000100000008300000
Counts of SNPs105
Variant counts last updated 2018-05-28 19:49:40.

* BED data not available. Using default values.

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