Tree Position

R-P312/S116 > Z290 > L21/S145 > S552 > DF13 > Z39589 > L1335/S530 > L1065 > Z16325 > S744 > Y16858 > Y17075 > PF5236 > FT129746 > Z17615 > BY112435

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19) POS-REF-ALT (hg38) Blocks Names Region McDonald BED combBED STRBigY3
18344349-A-T 16232469-A-T FT76906 P6_Prx A*
21039312-C-CT 18877426-C-CT 10×TA*
20770202-C-T 18608316-C-T P4_Prx A*
6217983-T-G 6349942-T-G IR3_Dst A*
13567210-C-T 11411534-C-T +
8902262-G-GT 9034221-G-GT +
18113341-T-G 16001461-T-G YY+
10094158-T-C 10256549-T-C FT219053 +
18113736-A-T 16001856-A-T FT207606 YY+
3472788-G-C 3604747-G-C FT206169 +
2977546-C-T 3109505-C-T FT206093 +
8567313-C-T 8699272-C-T BY74099 YY+
4493184-T-A 4625143-T-A *
8303469-CT-C 8435428-CT-C 10×T*
16665524-A-T 14553644-A-T **
7114862-C-T 7246821-C-T **
2932883-G-T 3064842-G-T **
22540536-G-A 20378650-G-A **
3662195-T-G 3794154-T-G **
3662192-C-A 3794151-C-A **
22540529-T-C 20378643-T-C **
16665531-T-A 14553651-T-A **
14632485-T-C 12520554-T-C **
5364851-A-G 5496810-A-G **
15128092-G-A 13016179-G-A **
16298492-T-G 14186612-T-G **
17000635-C-G 14888755-C-G **
27216735-A-G 25070588-A-G P1_g3 **
6495506-G-A 6627465-G-A **
10081956-C-A 10244347-C-A **
19542140-C-T 17430260-C-T **
10082040-A-C 10244431-A-C **
16665519-T-C 14553639-T-C **
17642827-T-C 15530947-T-C **
10082045-T-TG 10244436-T-TG **
10081936-G-C 10244327-G-C **
22548140-G-A 20386254-G-A **
18177978-T-A 16066098-T-A **
22209025-C-A 20047139-C-A 24274479-G-AA17594 FGC65688 **
18841211-G-C 16729331-G-C **
8462064-CAAA-C 8594023-CAAA-C 26×A**
17635324-G-T 15523444-G-T **
27967355-T-TAG 25821208-T-TAG P1_Y2 14×AG**
17618136-G-T 15506256-G-T ***
13429320-C-T 11273644-C-T ***
13486429-G-A 11330753-G-A ***
23097032-C-A 20935146-C-A ***
23037237-AT-A,ATT 20875351-AT-A,ATT 20×T***
14456786-G-C 12336059-G-C ***
13506458-G-T 11350782-G-T ***
21940116-G-A 19778230-G-A ***
14456784-T-G 12336057-T-G ***
19522085-G-C 17410205-G-C ***
19049580-G-A 16937700-G-A ***
18626394-C-CT 16514514-C-CT ***
12376216-ATTT-A,AT ***
17784358-G-T 15672478-G-T ***
16709144-T-A 14597264-T-A ***
17618132-T-G 15506252-T-G ***
17618135-A-T 15506255-A-T ***
16199681-A-T 14087801-A-T ***
7080832-G-A 7212791-G-A ***
23025229-CAAAAA-C,CAAAA 20863343-CAAAAA-C,CAAAA 29×A***
5146192-C-T 5278151-C-T 19×T***
22189234-CAA-C,CA 20027348-CAA-C,CA 17×A***
13898382-T-A 11777676-T-A ***
5880506-CT-C 6012465-CT-C 10×T***
13463026-G-A 11307350-G-A ***
15592550-CAAAAA-C 13480670-CAAAAA-C 22×A***
15115608-CT-C 13003695-CT-C 8×T***
8843536-ATTTTT-A,ATT 8975495-ATTTTT-A,ATT 23×T***
12730473-A-ATT 21×T***
13463111-T-A 11307435-T-A ***
22722390-A-G 20560504-A-G ***
5007689-CAAAA-C 5139648-CAAAA-C 22×A***
14772676-ATTTT-A,ATTT 12660745-ATTTT-A,ATTT 21×T***
16732961-GTT-G 14621081-GTT-G 14×T***
17114685-TACACAC-T 15002805-TACACAC-T 19×AC***
18128207-CAA-C,CAAA 16016327-CAA-C,CAAA 16×A***
5887228-CA-C,CAA 6019187-CA-C,CAA 18×A***
6822280-T-A 6954239-T-A ***
28723552-A-AT 26577405-A-AT 10×T***
5657517-C-T 5789476-C-T ***
5609652-T-C 5741611-T-C ***
5568633-T-C 5700592-T-C ***
3114479-A-T 3246438-A-T ***
23992318-TA-T 21846171-TA-T 10×A***
13462463-T-C 11306787-T-C ***
13469969-A-G 11314293-A-G ***
21940112-G-A 19778226-G-A ***
5350037-CTTT-C 5481996-CTTT-C 21×T***
13462447-A-T 11306771-A-T ***
28613771-C-CTT 26467624-C-CTT 16×T***
3970985-C-CTT 4102944-C-CTT 17×T***
17364112-AT-A 15252232-AT-A ***
17364107-T-TA 15252227-T-TA ***
21127604-A-AAT 18965718-A-AAT ***
12376050-CTTT-C ***
56887045-T-C ***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.

Age Analysis Information (work in progress)

Kit: B113711467829092176138205804
Used in age calculations1467829092176138205804
Counts of SNPs33
Variant counts last updated 2022-06-23 04:29:44.

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