Tree Position

R-M269 > L23 > Z2103 > Exact position not yet finalized.

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19) POS-REF-ALT (hg38) Blocks Names Region McDonald BED combBED STRBigY3
22244209-C-A 20082323-C-A DYZ19 A+
23878616-G-A 21716730-G-A A+
21741521-T-C A+
28817501-G-A 26671354-G-A A*
20690732-T-C 18528846-T-C P4_Prx A*
20670453-A-T 18508567-A-T P4_Prx A*
26114642-G-GAC 23968495-G-GAC P1_Y1 9×ACA*
19608869-G-A 17496989-G-A P5_Prx YA*
3722852-G-A 3854811-G-A A*
4410191-T-C 4542150-T-C A*
18339437-T-C 16227557-T-C P6_Prx A*
13267431-C-CA 11111755-C-CA 16×AA*
18274948-G-GTA 16163068-G-GTA P6_Prx 8×TAA*
5570689-G-A 5702648-G-A A*
6232245-G-A 6364204-G-A IR3_Dst A*
6316307-A-G 6448266-A-G IR3_Dst A*
24447151-A-G 22301004-A-G YA*
56830961-C-A A*
19655755-C-T 17543875-C-T P5_Prx A*
22277599-T-A 20115713-T-A DYZ19 A*
4453297-A-G 4585256-A-G A*
16102884-G-GT 13991004-G-GT P8_Prx 13×TA*
58979931-T-C 56833784-T-C A*
26289894-T-C 24143747-T-C P1_Y1 A*
13452276-C-T 11296600-C-T A*
24336793-C-CT 22190646-C-CT P3_t1 20×TA*
22305091-G-A 20143205-G-A DYZ19 A*
25568831-C-T 23422684-C-T P1_gr1 A*
25524954-A-AC 23378807-A-AC P1_gr1 A*
26204205-G-C 24058058-G-C P1_Y1 A*
56834274-A-C A*
19859942-G-GA 17748062-G-GA P5_Prx 11×AA*
3668068-A-G 3800027-A-G FT15555 +
2814664-T-C 2946623-T-C YY+
2994241-TAAAA-T 3126200-TAAAA-T 8×A+
8708935-T-A 8840894-T-A FT143602 YY+
8488564-G-C 8620523-G-C FT143587 YY+
8376248-C-T 8508207-C-T FT143578 YY+
8238447-C-T 8370406-C-T YY+
7696943-C-G 7828902-C-G FT143528 YY+
7512670-T-C 7644629-T-C Y+
3051436-C-G 3183395-C-G +
5575456-CTT-C 5707415-CTT-C +
5609034-C-T 5740993-C-T FT143304 +
3864676-C-T 3996635-C-T FT142970 +
3236791-T-G 3368750-T-G FT142851 +
2716671-TG-T 2848630-TG-T +
5085757-T-C 5217716-T-C FT143206 +
5070709-G-A 5202668-G-A FT62602 +
4798789-G-C 4930748-G-C +
22464138-G-A 20302252-G-A BY221258 DYZ19 +
4708905-C-T 4840864-C-T +
4268735-A-G 4400694-A-G FT143056 +
9481263-A-C 9643654-A-C FT143646 +
13900978-C-G 11780272-C-G FT143683 Y+
9733774-G-C 9896165-G-C FT143649 IR3_Prx +
21902268-C-A 19740382-C-A YY+
19114979-T-A 17003099-T-A FT144160 YY+
19170852-T-A 17058972-T-A FT144166 Y+
19181591-T-A 17069711-T-A BY127002 Y+
19232447-G-T 17120567-G-T BY10572 YY+
21512903-A-G 19351017-A-G BY133510 YY+
21687390-G-A 19525504-G-A FT144287 YY+
22117334-A-T 19955448-A-T FT144334 YY+
18404129-C-T 16292249-C-T FT144094 P6_Gap +
22584118-G-A 20422232-G-A FT144347 YY+
22625609-G-A 20463723-G-A YY+
22690060-T-C 20528174-T-C FT144353 YY+
22699141-G-C 20537255-G-C FT144355 YY+
22946598-G-A 20784712-G-A YY+
23142523-C-T 20980637-C-T Y+
28681716-G-A 26535569-G-A FT144486 +
9752141-T-G 9914532-T-G FT143652 +
18561792-G-T 16449912-G-T FT144100 YY+
17777851-T-A 15665971-T-A FT144036 Y+
17685957-C-A 15574077-C-A YY+
9839754-C-T 10002145-C-T FT143659 YY+
17192972-C-T 15081092-C-T BY43464 YY+
10826171-C-T FT432916 +
10838884-C-G FT433537 +
13443049-A-T 11287373-A-T FT443702 +
18982540-C-T 16870660-C-T FT144140 YY+
18756079-G-A 16644199-G-A FT144122 YY+
14532754-T-G 12420955-T-G Y+
15006797-C-T 12894882-C-T FT143806 YY+
15330902-A-T 13219020-A-T BY100886 YY+
15719908-C-T 13608028-C-T BY103576 YY+
16199913-C-T 14088033-C-T YY+
16221720-A-G 14109840-A-G FT143894 YY+
16659184-T-C 14547304-T-C BY109273 YY+
17426329-A-G 15314449-A-G FT144001 YY+
2986584-G-A 3118543-G-A FT142802 +
3899570-A-T 4031529-A-T *
4647564-C-T 4779523-C-T *
3716170-G-T 3848129-G-T *
5841085-C-G 5973044-C-G *
5841052-C-G 5973011-C-G *
4452776-G-A 4584735-G-A *
3899386-T-G 4031345-T-G FT271074 *
3899405-G-C 4031364-G-C *
4258408-A-G 4390367-A-G *
14466530-AATCT-A 12345803-AATCT-A 9×ATCT*
5691725-T-A 5823684-T-A *
5691760-T-C 5823719-T-C *
3920329-C-T 4052288-C-T *
4450308-G-A 4582267-G-A *
4452922-C-G 4584881-C-G *
4454972-A-G 4586931-A-G *
4453585-G-T 4585544-G-T *
4453554-GA-G 4585513-GA-G *
18060325-TATGTAC-T 15948445-TATGTAC-T **
28602195-AT-A 26456048-AT-A 15×T**
5244329-C-T 5376288-C-T **
5766828-T-C 5898787-T-C **
28797815-A-ATGGAT 26651668-A-ATGGAT **
15184011-G-T 13072097-G-T **
17551638-G-T 15439758-G-T **
59033361-G-A 56887214-G-A **
17859516-G-T 15747636-G-T **
18518146-G-GT 16406266-G-GT P6_Dst 12×T**
13631219-G-C 11475543-G-C **
18526500-C-A 16414620-C-A P6_Dst **
23293478-ATGTG-A 21131592-ATGTG-A 14×TG**
22277842-G-T 20115956-G-T DYZ19 **
9916048-T-C 10078439-T-C **
13475814-G-C 11320138-G-C **
18006896-C-A 15895016-C-A P7_Gap **
28797853-G-A 26651706-G-A **
4976555-A-G 5108514-A-G FT75081 **
22460487-C-G 20298601-C-G BY220537 DYZ19 **
4636108-T-TA 4768067-T-TA **
21515862-CAAAA-C 19353976-CAAAA-C 28×A**
16111078-TA-T 13999198-TA-T P8_Prx **
9764316-GAGAA-G 9926707-GAGAA-G 7×AGAA**
28602234-C-A 26456087-C-A **
3604686-G-T 3736645-G-T **
28637996-C-T 26491849-C-T **
16648115-G-GT 14536235-G-GT 29×T**
4949181-G-GT 5081140-G-GT 12×T**
15863168-A-AG 13751288-A-AG **
22483380-C-A 20321494-C-A BY224479 DYZ19 **
6525830-C-A 6657789-C-A **
3868096-T-C 4000055-T-C **
3473081-C-A 3605040-C-A **
4174962-CTTTTTTTT-C 4306921-CTTTTTTTT-C 31×T**
22480195-G-A 20318309-G-A BY9481 DYZ19 **
4427168-G-T 4559127-G-T **
21764119-A-G FT194490 **
13446597-T-C 11290921-T-C BY85331 ***
28229493-A-G 26083346-A-G P1_b4 ***
17597154-C-CT 15485274-C-CT 20×T***
22924455-A-AT 20762569-A-AT 15×T***
16818677-A-T 14706797-A-T KMS74 12×AT***
7137214-TAC-T 7269173-TAC-T 9×AC***
16627750-A-G 14515870-A-G ***
8221228-CTT-C 8353187-CTT-C 16×T***
23209065-T-TA 21047179-T-TA 10×A***
3923120-A-T 4055079-A-T ***
15278771-T-A 13166860-T-A AM01935 9×TTATA***
22281427-G-C 20119541-G-C DYZ19 ***
16625292-G-A 14513412-G-A ***
22154971-G-T 19993085-G-T ***
21318477-C-CA 19156591-C-CA 19×A***
3923086-G-A 4055045-G-A ***
4256262-T-G 4388221-T-G ***
6525768-CA-C 6657727-CA-C 24×A***
4455104-A-C 4587063-A-C ***
4498169-G-T 4630128-G-T ***
5362579-GAC-G 5494538-GAC-G 13×AC***
2686603-T-TA 2818562-T-TA 16×A***
28534940-CTTT-C 26388793-CTTT-C 18×T***
22340251-C-A 20178365-C-A DYZ19 ***
16482359-T-TTA 14370479-T-TTA 9×TA***
13529477-CT-C 11373801-CT-C 13×T***
4277201-CTT-C 4409160-CTT-C 20×T***
4769011-G-A 4900970-G-A ***
13340744-T-C 11185068-T-C ***
4454911-T-G 4586870-T-G ***
4415417-A-G 4547376-A-G ***
15132065-ATT-A 13020152-ATT-A 14×T***
10974004-CTCCAT-C ***
8690208-ATTT-A 8822167-ATTT-A 29×T***
5885123-T-TAA 6017082-T-TAA 17×A***
28545016-CAAAA-C 26398869-CAAAA-C 22×A***
3917415-G-GT 4049374-G-GT 10×T***
13340680-G-T 11185004-G-T ***
13340682-G-C 11185006-G-C ***
13340746-A-T 11185070-A-T ***
25963845-CA-C 23817698-CA-C P1_Y1 11×A***
13466451-A-G 11310775-A-G ***
4586388-C-CT 4718347-C-CT 11×T***
6040789-C-CAA 6172748-C-CAA 22×A***
3363318-CT-C,CTT 3495277-CT-C,CTT 15×T***
13340581-G-C 11184905-G-C ***
3920175-A-G 4052134-A-G ***
5887228-CAAA-C 6019187-CAAA-C 18×A***
15658099-C-T 13546219-C-T ***
4488643-A-T 4620602-A-T ***
5434604-C-T 5566563-C-T ***
4505769-T-C 4637728-T-C ***
24472421-GTT-G 22326274-GTT-G 25×T***
8125042-A-AG 8257001-A-AG ***
22508544-C-T 20346658-C-T DYZ19 ***
15596633-G-T 13484753-G-T ***
9416731-GTT-G 9579122-GTT-G 23×T***
13280273-C-A 11124597-C-A ***
13475822-G-C 11320146-G-C ***
13258777-A-AT 11103101-A-AT 11×T***
13340580-G-A 11184904-G-A ***
5138547-CAAA-C 5270506-CAAA-C 17×A***
19720706-G-T 17608826-G-T P5_Prx ***
24673173-G-GCACA 22527026-G-GCACA P3_b2 16×CA***
22508539-G-A 20346653-G-A DYZ19 ***
13340745-A-C 11185069-A-C ***
17821825-GAAAA-G 15709945-GAAAA-G 17×A***
21553403-CTT-C 19391517-CTT-C 31×T***
8773858-C-CA 8905817-C-CA 16×A***
3809136-AT-A 3941095-AT-A 31×T***
7019043-TA-T 7151002-TA-T 11×A***
6374820-T-C 6506779-T-C FT326364 ***
10648089-T-C ***
6044712-C-A 6176671-C-A ***
10782883-C-CTCCAT ***
14566981-AT-A 12455181-AT-A 10×T***
16713809-TA-T 14601929-TA-T 10×A***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.

Age Analysis Information (work in progress)

Kit: B5132361501915594204758349429
Used in age calculations1501915594204758349429
Counts of SNPs3831
Variant counts last updated 2022-08-14 03:00:58.

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