Tree Position

R-M269 > L23 > L51 > P310 > L151 > S1194 > S1200 > S14328 > A8469 > ZS5789 > BY33855

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19) POS-REF-ALT (hg38) Blocks Names Region McDonald BED combBED STRBigY3
27860512-C-G 25714365-C-G P1_Y2 A+
25578671-G-GT 23432524-G-GT P1_gr1 13×TA*
19581500-A-G 17469620-A-G P5_Prx YA*
13448012-A-G 11292336-A-G A*
22304463-G-C 20142577-G-C DYZ19 A*
22290408-T-A 20128522-T-A DYZ19 A*
10930562-C-A A*
6255519-C-A 6387478-C-A IR3_Dst A*
6254591-A-G 6386550-A-G IR3_Dst A*
6187622-A-C 6319581-A-C IR3_Dst A*
6111145-C-T 6243104-C-T A*
22252835-G-T 20090949-G-T DYZ19 A*
13449972-C-T 11294296-C-T A*
25934375-T-TA 23788228-T-TA P1_Y1 17×AA*
25592446-A-AT 23446299-A-AT P1_gr1 14×TA*
20942075-C-A 18780189-C-A P4_Dst A*
19934740-A-G 17822860-A-G P5_Prx A*
28375908-T-A 26229761-T-A P1_gr2 A*
19986610-C-A 17874730-C-A P5_Prx A*
15830676-A-C 13718796-A-C YYA*
16163592-T-TA 14051712-T-TA P8_Dst 13×AA*
19997346-G-T 17885466-G-T P5_Prx A*
58977311-G-A 56831164-G-A A*
20702104-G-T 18540218-G-T P4_Prx A*
13687336-G-T 11531660-G-T A*
20479512-C-CT 18317626-C-CT P5_Dst 19×TA*
26036403-A-G 23890256-A-G P1_Y1 A*
58975773-C-T 56829626-C-T A*
25514627-C-CT 23368480-C-CT P1_gr1 13×TA*
26130957-G-A 23984810-G-A P1_Y1 A*
26059583-A-C 23913436-A-C P1_Y1 A*
19926979-G-T 17815099-G-T P5_Prx A*
28794136-T-A 26647989-T-A A*
26101908-G-C 23955761-G-C P1_Y1 A*
28816812-G-A 26670665-G-A A*
18380845-G-T 16268965-G-T P6_Prx A*
13507257-G-GA 11351581-G-GA 10×AA*
28817744-G-GA 26671597-G-GA A*
15522644-A-G 13410764-A-G YY+
6039647-G-C 6171606-G-C FT136912 +
15350860-C-G 13238979-C-G FT138770 YY+
5322341-C-T 5454300-C-T FT136525 +
5243754-T-C 5375713-T-C +
3644997-C-G 3776956-C-G FT135636 +
16474255-T-A 14362375-T-A FT175885 YY+
15525300-A-G 13413420-A-G FT138836 YY+
3277372-C-T 3409331-C-T FT135461 +
2880423-A-G 3012382-A-G FT172231 YY+
17225762-C-T 15113882-C-T YY+
15706467-T-G 13594587-T-G YY+
16436314-G-T 14324434-G-T FT139126 YY+
14199294-C-A 12078588-C-A BY199775 YY+
19160476-T-C 17048596-T-C FT140095 YY+
15133761-G-A 13021848-G-A YY+
9861179-C-T 10023570-C-T FT174823 YY+
19257227-T-C 17145347-T-C FT176887 YY+
13929998-C-T 11809292-C-T FT174956 Y+
13894797-C-T 11774091-C-T FT138137 Y+
13816722-C-T 11696016-C-T FT138073 +
11644332-G-T FT225309 +
13573002-T-G 11417326-T-G BY86479 +
14732406-A-T 12620474-A-T YY+
19281164-G-A 17169284-G-A FT176900 YY+
7041855-C-T 7173814-C-T FT137195 Y+
8884403-G-A 9016362-G-A Y+
14468806-G-A 12348075-G-A YY+
8788934-G-A 8920893-G-A FT137803 YY+
8666013-T-C 8797972-T-C YY+
18747261-A-G 16635381-A-G FT176685 YY+
8613937-G-C 8745896-G-C FT137738 YY+
7009462-G-A 7141421-G-A YY+
6942855-C-G 7074814-C-G FT173905 YY+
6933411-C-G 7065370-C-G BY62339 YY+
14889599-T-C 12777665-T-C FT175369 YY+
6440108-A-G 6572067-A-G FT136988 +
5039452-A-GG 5171411-A-GG +
17526912-G-T 15415032-G-T FT176303 YY+
17323551-A-T 15211671-A-T FT176204 YY+
5257534-AT-A 5389493-AT-A 10×T+
24274300-A-G 22128153-A-G P3_b1 +
22199377-G-A 20037491-G-A FT140753 YY+
24505027-T-C 22358880-T-C +
23121387-G-C 20959501-G-C YY+
14396417-C-A 12275713-C-A FT175198 YY13×A+
22888266-A-T 20726380-A-T FT177603 YY+
21398675-C-T 19236789-C-T YY+
9786101-T-C 9948492-T-C Y26571 Y+
18558878-T-A 16446998-T-A Y102078 YY+
28609518-C-A 26463371-C-A FT141401 Y+
18718691-GTATC-G 16606811-GTATC-G 8×TATC+
22792785-T-G 20630899-T-G FT140863 YY+
17762006-C-T 15650126-C-T FT139613 YY+
28663965-G-C 26517818-G-C FT141421 +
22444727-A-T 20282841-A-T BY219465 DYZ19 +
6740037-A-C 6871996-A-C S9397 Z8118S9397 FGC4917 Z8118 YY+
10837808-ATCCAT-A *
10822647-T-TTTCCA *
9614851-G-T 9777242-G-T IR3_Prx *
56824032-A-G *
22319401-A-T 20157515-A-T DYZ19 *
13262918-A-T 11107242-A-T *
22254467-G-T 20092581-G-T FT453679 DYZ19 *
21720584-A-AAAAAAG 19558698-A-AAAAAAG *
4314354-TC-T 4446313-TC-T *
13834028-T-TATGGA 11713322-T-TATGGA 7×ATGGA*
17275007-T-TAGAC 15163127-T-TAGAC 8×AGAC*
16996654-C-CT 14884774-C-CT 15×T**
13222614-AGGGAGAGG-A 11066938-AGGGAGAGG-A **
14457387-CA-C 12336660-CA-C 18×A**
20569658-G-A 18407772-G-A P5_Dst **
17030782-G-T 14918902-G-T **
8085438-C-CA 8217397-C-CA 15×A**
26272186-T-G 24126039-T-G P1_Y1 **
16266502-A-G 14154622-A-G **
13453189-C-A 11297513-C-A **
13453144-C-G 11297468-C-G **
22479134-G-T 20317248-G-T DYZ19 **
21571351-AAAGCATTC-A 19409465-AAAGCATTC-A **
13606877-C-CA 11451201-C-CA 25×A**
24422522-T-A 22276375-T-A FT285035 **
13453162-TC-T 11297486-TC-T **
20795908-TAA-T 18634022-TAA-T P4_Prx 19×A**
21753251-CTCTCTCTG-C **
25617176-TG-T 23471029-TG-T P1_gr1 **
3142523-CTTCT-C 3274482-CTTCT-C **
16099147-C-A 13987267-C-A P8_Prx **
20040421-C-A 17928541-C-A P5_Prx **
10912664-G-A **
9948124-G-T 10110515-G-T **
22950193-C-CT 20788307-C-CT 21×T**
6279812-G-T 6411771-G-T IR3_Dst **
8236894-C-A 8368853-C-A **
7207392-T-TA 7339351-T-TA 11×A**
13222639-G-A 11066963-G-A **
22433845-T-A 20271959-T-A DYZ19 **
19424951-A-G 17313071-A-G **
9925148-A-G 10087539-A-G **
24280909-G-T 22134762-G-T BY196837 P3_t1 **
22287224-T-G 20125338-T-G DYZ19 ***
22511371-C-A 20349485-C-A DYZ19 ***
22510140-G-C 20348254-G-C DYZ19 ***
18588726-T-TA 16476846-T-TA 16×A***
5459014-G-A 5590973-G-A ***
23241947-CTTT-C 21080061-CTTT-C 27×T***
13461545-G-C 11305869-G-C ***
5253170-CTTT-C 5385129-CTTT-C 23×T***
6091720-ATTT-A 6223679-ATTT-A 28×T***
5905890-CA-C 6037849-CA-C 27×A***
15364059-CAAA-C 13252179-CAAA-C 21×A***
13465922-C-A 11310246-C-A ***
13450128-A-T 11294452-A-T ***
13461569-T-C 11305893-T-C ***
21328805-CAAAA-C 19166919-CAAAA-C 30×A***
13461554-G-C 11305878-G-C ***
15558499-T-TAGACAGAC 13446619-T-TAGACAGAC 5×AGAC***
4389597-CTT-C 4521556-CTT-C 15×T***
9654292-A-G 9816683-A-G IR3_Prx ***
4778012-C-CA 4909971-C-CA 16×A***
21130587-C-CAAATAAAT 18968701-C-CAAATAAAT 11×AAAT***
13459313-T-C 11303637-T-C ***
19449428-GAA-G 17337548-GAA-G 23×A***
13470423-T-A 11314747-T-A ***
14784872-ATTT-A,ATT 12672942-ATTT-A,ATT 18×T***
13453168-C-T 11297492-C-T ***
14569689-A-G 12457889-A-G ***
14286779-CATTTCTTT-C,CT 12166073-CATTTCTTT-C,CT ***
10654851-T-A ***
8907796-C-A 9039755-C-A ***
5683920-T-C 5815879-T-C ***
3394337-CTT-C,CT 3526296-CTT-C,CT 21×T***
13476609-T-A 11320933-T-A ***
13470655-GGT-G 11314979-GGT-G ***
3482590-CA-C 3614549-CA-C 22×A***
10896293-AATTCCATTCC-A ***
10986808-TCA-T ***
27967336-GTATA-G 25821189-GTATA-G P1_Y2 10×TA***
10915957-G-T ***
5572474-C-CT 5704433-C-CT 15×T***
5288945-TA-T 5420904-TA-T 13×A***
17046715-GTTT-G 14934835-GTTT-G 25×T***
4316852-GA-G 4448811-GA-G 10×A***
11031569-A-ACCATT ***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.

Age Analysis Information (work in progress)

Kit: 9158201518280895109318376791
Used in age calculations1518280895109318376791
Counts of SNPs4138
Variant counts last updated 2022-07-13 03:00:36.

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