Tree Position

R-P312/S116 > Z290 > L21/S145 > DF13 > Z39589 > DF41/S524 > Z43690 > Y8426/FGC5572 > FGC5586 > A40 > MC07 > MC13

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19) POS-REF-ALT (hg38) Blocks Names Region McDonald BED combBED STRFTDNA
297361
BigY2
297361
6153369-T-C 6285328-T-C BY59340 IR3_Dst ++
14374818-G-C 12254114-G-C BY95327 YY++
19203864-AATTT-A 17091984-AATTT-A ++
16786259-G-A 14674379-G-A A3411 YP3124 YY++
21733617-T-C 19571731-T-C BY135089 YY++
8201324-A-G 8333283-A-G BY70669 YY++
7014921-G-T 7146880-G-T BY53607 YY++
6912368-C-G 7044327-C-G BY62157 YY++
13943976-C-T 11823270-C-T **
14530565-A-T 12418766-A-T **
14196434-C-G 12075728-C-G **
14109442-T-C 11988736-T-C **
14109413-C-G 11988707-C-G **
14053532-C-A 11932826-C-A **
14031926-C-A 11911220-C-A **
13988982-A-G 11868276-A-G **
13944587-C-A 11823881-C-A **
11669545-G-T **
13922513-G-C 11801807-G-C **
13919880-A-G 11799174-A-G **
13919786-A-C 11799080-A-C **
13800840-A-G 11680134-A-G **
14598772-G-T 12486972-G-T **
11646162-C-A **
13721481-G-T 11565805-G-T **
13643970-C-A 11488294-C-A **
13641391-A-C 11485715-A-C **
13588942-C-A 11433266-C-A **
14567355-C-A 12455555-C-A **
14700697-C-T 12588763-C-T **
14605190-T-C 12493392-T-C **
15158895-A-G 13046981-A-G **
15943627-G-T 13831747-G-T **
15928542-A-C 13816662-A-C **
15834179-T-C 13722299-T-C **
15748005-T-C 13636125-T-C **
15743626-T-C 13631746-T-C **
15650569-T-A 13538689-T-A **
15556893-G-C 13445013-G-C **
15392463-C-G 13280583-C-G **
15368650-C-A 13256770-C-A **
15157806-G-A 13045893-G-A **
14605192-A-C 12493394-A-C **
15157329-C-A 13045416-C-A **
15140852-C-T 13028939-C-T **
14965360-T-G 12853435-T-G **
14858684-T-C 12746750-T-C **
14776919-A-G 12664988-A-G **
14756223-G-T 12644292-G-T **
13531544-G-T 11375868-G-T **
14698330-A-T 12586396-A-T **
14688737-C-G 12576803-C-G **
13584673-A-T 11428997-A-T **
13324715-C-T 11169039-C-T **
13512186-G-T 11356510-G-T **
9116859-G-C 9279250-G-C **
10033240-C-A 10195631-C-A **
9927487-A-T 10089878-A-T **
9674845-T-C 9837236-T-C IR3_Prx **
9674813-T-C 9837204-T-C IR3_Prx **
9639098-G-GTT 9801489-G-GTT IR3_Prx **
9621866-G-T 9784257-G-T IR3_Prx **
9492002-G-C 9654393-G-C **
9411023-G-T 9573414-G-T **
8987769-C-T 9150160-C-T **
10655065-A-T **
8816780-C-A 8948739-C-A **
8661190-A-T 8793149-A-T **
8140476-C-A 8272435-C-A **
8058308-C-A 8190267-C-A **
7986028-T-C 8117987-T-C **
7984498-G-A 8116457-G-A **
7894604-T-C 8026563-T-C **
7784546-C-A 7916505-C-A **
7753256-AT-A 7885215-AT-A 8×T**
10655053-C-A **
10661731-C-A **
13425626-G-A 11269950-G-A **
10935486-C-A **
13425606-G-A 11269930-G-A **
15995572-T-C 13883692-T-C **
13303401-C-A 11147725-C-A **
13206452-C-A 11050776-C-A **
11024320-G-T **
11020644-T-A **
10982638-CTCCAT-C **
10974623-C-CCAGTT **
10958157-T-A **
10911757-G-C **
10662173-A-T **
10870332-T-A **
10861436-T-A **
10860681-C-G **
10850636-A-T **
10769349-T-C **
10683521-A-T **
10678562-C-A **
10668880-TC-T **
10668603-C-A **
15995554-G-C 13883674-G-C **
3029755-C-T 3161714-C-T PF5515 ****
16015154-T-G 13903274-T-G **
21899806-C-T 19737920-C-T **
22548164-A-G 20386278-A-G **
22287080-T-C 20125194-T-C DYZ19 **
22182899-C-A 20021013-C-A **
22085552-C-A 19923666-C-A **
22085528-C-G 19923642-C-G **
22085515-C-G 19923629-C-G **
22085464-T-A 19923578-T-A **
21979909-G-T 19818023-G-T **
21899804-G-A 19737918-G-A **
22651417-T-G 20489531-T-G **
21899798-C-T 19737912-C-T **
21899797-T-C 19737911-T-C **
21899791-T-C 19737905-T-C **
21824849-T-C 19662963-T-C **
21635288-G-C 19473402-G-C **
21447925-T-A 19286039-T-A **
21320200-C-T 19158314-C-T **
21320146-T-A 19158260-T-A **
21240496-C-A 19078610-C-A **
22629829-T-G 20467943-T-G **
22689996-A-G 20528110-A-G **
21201189-A-G 19039303-A-G **
27932677-T-C 25786530-T-C P1_Y2 **
28779037-T-A 26632890-T-A **
28709212-C-A 26563065-C-A **
28690914-C-A 26544767-C-A **
28661952-C-A 26515805-C-A **
28614844-C-A 26468697-C-A 13×T**
28591953-G-T 26445806-G-T **
28469511-C-A 26323364-C-A **
28461977-C-A 26315830-C-A **
27939518-A-T 25793371-A-T P1_Y2 **
27509351-A-AC 25363204-A-AC P1_Y2 **
23096683-C-A 20934797-C-A **
26834587-A-G 24688440-A-G P1_g2 **
25931704-C-A 23785557-C-A P1_Y1 **
24402119-C-T 22255972-C-T **
24241206-A-AAAC 22095059-A-AAAC P3_b1 **
23953189-GA-G 21807042-GA-G **
23475520-C-G 21313634-C-G **
23188291-A-C 21026405-A-C **
23185356-A-G 21023470-A-G **
23184952-G-T 21023066-G-T **
21211768-G-T 19049882-G-T **
21187772-A-G 19025886-A-G **
16044423-C-A 13932543-C-A **
17093733-C-A 14981853-C-A **
17860754-C-A 15748874-C-A **
17628056-C-A 15516176-C-A **
17616892-T-A 15505012-T-A **
17382540-G-A 15270660-G-A **
17367859-A-G 15255979-A-G **
17246371-C-G 15134491-C-G **
17181855-C-A 15069975-C-A **
17104144-A-G 14992264-A-G **
16999052-A-G 14887172-A-G **
18321274-TG-T 16209394-TG-T P6_Prx **
16998935-A-G 14887055-A-G **
16979624-T-C 14867744-T-C **
16826954-G-T 14715074-G-T **
16667886-A-C 14556006-A-C **
16620288-T-A 14508408-T-A **
16445787-G-C 14333907-G-C **
16344725-C-A 14232845-C-A **
7338613-C-A 7470572-C-A **
16172003-G-T 14060123-G-T **
18159578-C-A 16047698-C-A **
18321305-C-A 16209425-C-A P6_Prx **
21141155-G-A 18979269-G-A **
19464970-A-G 17353090-A-G **
21042958-T-C 18881072-T-C **
21029245-C-A 18867359-C-A P4_Dst **
20825492-C-A 18663606-C-A P4_Gap **
20793456-A-ATC 18631570-A-ATC P4_Prx **
20654683-G-GGGACA 18492797-G-GGGACA P4_Prx **
20440480-G-A 18278594-G-A P5_Dst **
20439105-A-AT 18277219-A-AT P5_Dst **
19921626-T-C 17809746-T-C P5_Prx **
19726201-A-C 17614321-A-C P5_Prx **
19464902-T-G 17353022-T-G **
18321322-C-A 16209442-C-A P6_Prx **
19388269-T-A 17276389-T-A **
19379587-C-T 17267707-C-T **
19290420-T-C 17178540-T-C **
19031270-T-A 16919390-T-A **
18869239-T-A 16757359-T-A **
18703077-C-A 16591197-C-A **
18621673-T-C 16509793-T-C **
18411048-G-T 16299168-G-T P6_Gap **
18398184-C-A 16286304-C-A P6_Gap **
16320499-G-A 14208619-G-A **
7383706-A-T 7515665-A-T **
7304534-A-G 7436493-A-G **
8987279-G-A 9149670-G-A **
20440392-T-TTCG 18278506-T-TTCG P5_Dst 13×TTG**
14844431-C-A 12732497-C-A **
8741601-C-A 8873560-C-A **
8850763-C-A 8982722-C-A **
21985129-C-A 19823243-C-A **
3148750-C-A 3280709-C-A **
10034421-C-A 10196812-C-A **
13522772-C-A 11367096-C-A FGC10056 **
19476513-T-C 17364633-T-C **
8679410-C-A 8811369-C-A FGC73099 **
17912906-C-A 15801026-C-A **
10814709-C-A **
18402441-T-C 16290561-T-C P6_Gap **
15070433-C-A 12958524-C-A **
22591298-A-T 20429412-A-T **
27633836-G-T 25487689-G-T P1_Y2 **
56847242-G-T **
8852219-C-A 8984178-C-A **
17622613-C-A 15510733-C-A **
9666488-G-T 9828879-G-T IR3_Prx **
14283491-C-A 12162785-C-A **
14632960-C-T 12521029-C-T **
14067006-C-A 11946300-C-A **
10759386-T-TTAA **
10855656-G-T **
24877584-G-T 22731437-G-T g1 **
7132785-C-A 7264744-C-A **
14919337-C-A 12807402-C-A **
8314201-G-A 8446160-G-A **
19312324-C-A 17200444-C-A **
14216485-A-G 12095779-A-G **
15541671-C-T 13429791-C-T **
13489480-A-G 11333804-A-G **
9386164-G-T 9548555-G-T **
7427924-C-A 7559883-C-A **
3276174-C-A 3408133-C-A **
11019425-A-T **
14798595-C-A 12686666-C-A **
15150304-G-A 13038391-G-A **
7994255-C-A 8126214-C-A **
14253172-G-T 12132466-G-T **
14253169-G-C 12132463-G-C **
16020841-C-A 13908961-C-A **
20028091-C-A 17916211-C-A P5_Prx **
10776693-G-T **
3276096-C-A 3408055-C-A **
28719368-C-A 26573221-C-A **
13690255-C-A 11534579-C-A **
18794214-C-A 16682334-C-A **
24614078-G-T 22467931-G-T P3_t2 **
14219676-C-A 12098970-C-A **
21211726-C-A 19049840-C-A **
18825649-A-T 16713769-A-T **
4133938-C-A 4265897-C-A **
18615960-G-TT 16504080-G-TT **
9979171-C-A 10141562-C-A **
10026282-C-A 10188673-C-A **
21409099-C-A 19247213-C-A **
6352531-G-T 6484490-G-T **
13303425-C-A 11147749-C-A **
13195983-C-A 11040307-C-A **
13809258-A-G 11688552-A-G **
18321273-C-T 16209393-C-T P6_Prx **
14109408-C-T 11988702-C-T **
18650689-C-A 16538809-C-A **
56835489-T-TCCCA **
28632942-C-A 26486795-C-A **
28622260-C-A 26476113-C-A **
17115154-ATTT-A 15003274-ATTT-A 14×T**
14253180-G-A 12132474-G-A BZ1047 **
5219162-C-A 5351121-C-A **
10866161-C-A **
4049160-C-A 4181119-C-A **
13988965-C-A 11868259-C-A **
15198693-C-A 13086779-C-A **
13402770-C-A 11247094-C-A **
10655060-T-C **
18990316-C-A 16878436-C-A **
11675031-G-T **
14462512-C-A 12341785-C-A **
22124097-C-A 19962211-C-A **
10942969-C-T **
15987341-C-A 13875461-C-A **
3343135-C-A 3475094-C-A **
16232402-C-A 14120522-C-A **
15788093-C-A 13676213-C-A **
17255064-A-G 15143184-A-G **
10753190-T-TATTCC **
17860034-G-T 15748154-G-T **
18577168-C-A 16465288-C-A **
7755028-C-A 7886987-C-A **
5816823-A-T 5948782-A-T **
6366406-T-A 6498365-T-A **
6313301-TACAC-T 6445260-TACAC-T IR3_Dst **
6311409-T-C 6443368-T-C IR3_Dst **
6205551-T-G 6337510-T-G IR3_Dst **
6099605-G-T 6231564-G-T **
6046811-A-G 6178770-A-G **
5845243-C-T 5977202-C-T **
5842600-C-G 5974559-C-G **
5684112-A-G 5816071-A-G **
6435711-A-G 6567670-A-G **
5684025-C-A 5815984-C-A **
5630254-G-A 5762213-G-A **
5539400-T-A 5671359-T-A **
5420500-C-A 5552459-C-A **
5212518-G-C 5344477-G-C **
20840754-A-T 18678868-A-T P4_Gap **
5127067-T-G 5259026-T-G **
5000626-C-A 5132585-C-A **
4908931-T-C 5040890-T-C **
6375595-C-T 6507554-C-T **
6479547-G-T 6611506-G-T **
4870787-T-A 5002746-T-A **
6831989-T-A 6963948-T-A **
7101964-C-A 7233923-C-A **
7093324-G-C 7225283-G-C **
7086510-T-A 7218469-T-A **
7080723-C-A 7212682-C-A **
7028656-C-A 7160615-C-A **
6992508-C-A 7124467-C-A **
6917771-GTACATT-G 7049730-GTACATT-G **
6882249-A-T 7014208-A-T **
6822099-C-A 6954058-C-A **
6490741-T-G 6622700-T-G **
6798765-T-A 6930724-T-A **
6791076-T-G 6923035-T-G **
6790990-T-A 6922949-T-A **
6776244-T-C 6908203-T-C **
6773243-C-A 6905202-C-A **
6729702-A-G 6861661-A-G **
6663962-T-G 6795921-T-G **
6648254-A-G 6780213-A-G **
6510591-T-A 6642550-T-A **
4908927-C-A 5040886-C-A **
5188436-C-G 5320395-C-G **
56855862-G-A **
14253170-G-A 12132464-G-A **
3889655-A-G 4021614-A-G **
11650546-C-A **
16028584-C-A 13916704-C-A **
3854020-C-T 3985979-C-T **
3732073-A-T 3864032-A-T **
3707540-A-G 3839499-A-G **
4695124-C-A 4827083-C-A **
3583128-C-A 3715087-C-A **
20825631-C-A 18663745-C-A P4_Gap **
3440342-T-C 3572301-T-C **
11676344-A-G **
3354670-G-T 3486629-G-T **
3126639-G-T 3258598-G-T **
3103661-G-T 3235620-G-T **
15971223-C-G 13859343-C-G **
18930711-C-A 16818831-C-A **
3046430-G-C 3178389-G-C **
3960908-A-G 4092867-A-G **
3995148-A-T 4127107-A-T **
14069975-C-A 11949269-C-A **
4094252-C-A 4226211-C-A **
4674908-G-T 4806867-G-T **
4534139-T-C 4666098-T-C **
4534136-G-C 4666095-G-C **
4450412-G-C 4582371-G-C **
4408408-T-G 4540367-T-G **
4272475-A-C 4404434-A-C **
4256867-G-A 4388826-G-A **
4244278-A-G 4376237-A-G **
6776255-A-G 6908214-A-G **
4196647-G-T 4328606-G-T **
4159791-C-A 4291750-C-A **
13711407-A-T 11555731-A-T **
4137764-G-C 4269723-G-C **
4129056-A-G 4261015-A-G **
21985144-C-A 19823258-C-A **
2948369-T-A 3080328-T-A **
25130871-G-A 22984724-G-A g1 ***
56836497-G-A ***
21775233-G-T 19613347-G-T ***
13474576-C-A 11318900-C-A ***
2948028-C-T 3079987-C-T ***
56833308-TGCCAT-C,CTCTAC ***
2651883-CTTTTTTT-C 2783842-CTTTTTTT-C 19×T***
9666567-A-G 9828958-A-G IR3_Prx ***
18165467-T-TTTA,TTTATTA 16053587-T-TTTA,TTTATTA 14×TTA***
56844161-C-A ***
10660197-C-A ***
17465029-C-T 15353149-C-T ***
21953535-CTTT-C,CT 19791649-CTTT-C,CT 15×T***
10809199-A-T ***
18190580-A-G 16078700-A-G ***
10884612-C-A ***
10691196-C-A ***
19461169-C-A 17349289-C-A ***
10940396-C-T ***
10660255-T-C ***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.

Age Analysis Information (work in progress)

AllMcDonaldYFull
Kit: 2973611082530578603347954304
Kit: 297361993388980545767923961
Used in age calculations1082530580545767954304
Counts of SNPs66
Variant counts last updated 2018-07-08 21:01:31.



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