Tree Position

R-M269 > L23 > L51 > P310 > L151 > S1194 > S1200 > S14328 > A8469 > S1196 > 11933437-T-G

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19) POS-REF-ALT (hg38) Blocks Names Region McDonald BED combBED STRBigY3
901164
10617471-C-G A+
20556311-C-T 18394425-C-T P5_Dst A*
13451609-C-T 11295933-C-T A*
22313592-A-T 20151706-A-T DYZ19 A*
13451424-C-T 11295748-C-T A*
25617175-T-TTG 23471028-T-TTG P1_gr1 19×TGA*
4311583-C-T 4443542-C-T A*
58976831-C-T 56830684-C-T A*
56831314-T-A A*
20649690-C-G 18487804-C-G P4_Prx A*
10093503-C-G 10255894-C-G A*
56831822-C-T A*
16111077-T-TTA 13999197-T-TTA P8_Prx A*
20075466-C-T 17963586-C-T P5_Dst A*
19915172-G-A 17803292-G-A P5_Prx A*
56834497-C-G A*
19777261-T-G 17665381-T-G P5_Prx A*
19586855-G-C 17474975-G-C P5_Prx YA*
10761037-C-T A*
56829746-C-T A*
19623467-G-A 17511587-G-A P5_Prx A*
13450840-C-T 11295164-C-T A*
56836764-C-A A*
56837160-G-A A*
4694681-A-G 4826640-A-G A*
13450051-C-T 11294375-C-T A*
26018043-G-A 23871896-G-A P1_Y1 A*
13450888-C-G 11295212-C-G A*
24333198-T-C 22187051-T-C P3_t1 A*
13451366-C-T 11295690-C-T A*
28817351-G-T 26671204-G-T A*
14490325-T-C 12369594-T-C YYA*
13450815-C-T 11295139-C-T A*
13448485-A-C 11292809-A-C A*
13236432-G-A 11080756-G-A FT441581 +
13250107-CT-C 11094431-CT-C +
22204810-C-T 20042924-C-T FGC27596 Y+
13823081-T-C 11702375-T-C FT101496 +
6085985-G-A 6217944-G-A FT93047 +
13539050-G-T 11383374-G-T FT444987 +
10950965-C-A FT225301 +
14030112-G-T 11909406-G-T FT101578 YY+
11659707-A-G FT450694 +
3321349-A-T 3453308-A-T FT100024 +
17353933-A-G 15242053-A-G FT102289 YY+
6042142-T-G 6174101-T-G FT100835 +
7860518-T-C 7992477-T-C FT101176 Y+
7831281-T-C 7963240-T-C FT101169 YY+
7785320-C-T 7917279-C-T FT101153 YY+
7764918-C-A 7896877-C-A FT101150 YY+
7538032-T-A 7669991-T-A BY186418 YY+
7067743-C-T 7199702-C-T YY+
6994274-C-G 7126233-C-G FT100999 YY+
6758845-A-G 6890804-A-G FT100951 YY+
6531744-G-A 6663703-G-A +
10053858-A-G 10216249-A-G FT426926 +
5513105-T-C 5645064-T-C FT100688 +
14512510-T-A 12400715-T-A FT101714 Y+
5310901-A-G 5442860-A-G FT100621 +
5129123-T-G 5261082-T-G FT100565 +
4920947-G-A 5052906-G-A FT100502 +
4617393-C-T 4749352-C-T FT100404 +
4334871-A-G 4466830-A-G FT100331 +
4261862-G-T 4393821-G-T FT100312 +
3867059-T-A 3999018-T-A +
3698176-T-C 3830135-T-C FT100131 +
3591167-A-G 3723126-A-G FT100095 +
3484051-G-A 3616010-G-A FT100062 +
14171677-A-G 12050971-A-G FT101610 YY+
8191751-GCTAA-G 8323710-GCTAA-G +
14796727-T-G 12684798-T-G FT101771 Y+
13215414-G-A 11059738-G-A FT441002 +
21075197-G-A 18913311-G-A FT102790 YY+
21428767-C-T 19266881-C-T FT102883 YY+
22594775-T-C 20432889-T-C BY39193 YY+
15032332-G-A 12920420-G-A FT101819 YY+
19269596-C-T 17157716-C-T FT102721 YY+
18955740-G-C 16843860-G-C FT102632 YY+
17956489-C-T 15844609-C-T FT102454 YY+
17667854-G-A 15555974-G-A FT102379 YY+
21431888-G-T 19270002-G-T FT102884 YY+
17159296-A-G 15047416-A-G FT102240 YY+
21722575-G-A 19560689-G-A FT102948 YY+
16664188-A-G 14552308-A-G FT102143 Y+
21398143-CAT-C 19236257-CAT-C +
16596847-G-A 14484967-G-A FT102129 YY+
16463613-G-T 14351733-G-T FT102093 YY+
15793391-C-T 13681511-C-T FT101981 Y+
28716174-G-T 26570027-G-T FT103446 +
15089012-G-A 12977101-G-A FT101830 YY+
23816416-G-A 21654530-G-A FT103319 Y+
15372822-G-A 13260942-G-A FT101892 YY+
22940649-T-G 20778763-T-G FT103158 YY+
8391258-T-C 8523217-T-C FT101281 YY+
22745226-T-C 20583340-T-C FT103109 YY+
7040308-G-A 7172267-G-A FT49599 Y+
15755270-G-T 13643390-G-T FT101971 YY+
13238871-G-A 11083195-G-A Z4006 +
21249985-T-C 19088099-T-C FGC72195 YY+
4402852-G-A 4534811-G-A *
59021197-G-A 56875050-G-A *
58984176-T-C 56838029-T-C *
4798636-C-G 4930595-C-G *
22340521-C-T 20178635-C-T DYZ19 *
56840455-T-C *
18908082-A-ATG 16796202-A-ATG 14×TG*
16447158-A-AAC 14335278-A-AAC 22×AC*
4473666-T-G 4605625-T-G *
3622966-T-TTGTG 3754925-T-TTGTG 17×TG*
10791212-T-TTTCCA *
10663707-C-A *
56839357-T-C *
10887326-A-ACCATT *
13677467-CGGAAT-C 11521791-CGGAAT-C 6×GGAAT*
11653786-CGAATG-C *
10654573-C-A **
12371796-CAA-C **
14468852-G-A 12348121-G-A FTA23451 **
28603006-T-A 26456859-T-A FTA27187 **
26478216-T-G 24332069-T-G P1_Y1 **
9493191-C-A 9655582-C-A FTA26210 **
25574731-A-C 23428584-A-C P1_gr1 **
22940655-GTC-G 20778769-GTC-G **
23226383-G-A 21064497-G-A **
16834104-A-AT 14722224-A-AT **
15576798-A-G 13464918-A-G **
9912920-G-T 10075311-G-T **
20250088-C-A 18088202-C-A P5_Dst **
22479758-G-C 20317872-G-C DYZ19 **
15670293-GA-G 13558413-GA-G **
15641738-A-C 13529858-A-C **
12375-A-T **
7630741-G-C 7762700-G-C FTA22797 **
20045574-CT-C 17933694-CT-C P5_Prx **
6298397-A-C 6430356-A-C IR3_Dst **
7282159-CTT-C 7414118-CTT-C 22×T**
20434831-G-T 18272945-G-T P5_Dst **
20500943-A-AC 18339057-A-AC P5_Dst **
22852199-CT-C 20690313-CT-C 16×T**
9564452-C-CT 9726843-C-CT IR3_Prx 14×T**
19138084-CTA-C 17026204-CTA-C 10×TA**
27484492-T-TTG 25338345-T-TTG P1_Y2 14×TG**
16364115-C-T 14252235-C-T **
13698488-G-T 11542812-G-T **
8036188-C-CA 8168147-C-CA 12×A**
5588608-A-T 5720567-A-T FGC44919 **
4503310-GTATTAT-G 4635269-GTATTAT-G 16×TAT**
7199342-C-CT 7331301-C-CT 24×T**
20649908-CT-C 18488022-CT-C P4_Prx **
8901076-C-CAT 9033035-C-CAT 15×AT**
3963833-C-A 4095792-C-A 22×A***
2795559-G-GTT 2927518-G-GTT 24×T***
5059202-T-G 5191161-T-G ***
3253065-T-C 3385024-T-C ***
18365541-ATGTG-A 16253661-ATGTG-A P6_Prx 20×TG***
15252840-ACT-A 13140926-ACT-A ***
5088451-CTTT-C 5220410-CTTT-C 27×T***
56828781-T-C ***
4983174-ATT-A 5115133-ATT-A 28×T***
13470792-T-C 11315116-T-C ***
22230390-G-C 20068504-G-C DYZ19 ***
13474487-C-A 11318811-C-A ***
59012483-T-A 56866336-T-A ***
18976792-TA-T 16864912-TA-T 10×A***
58974860-C-T 56828713-C-T ***
13474531-G-A 11318855-G-A ***
16860780-AAAAG-A 14748900-AAAAG-A 9×AAAG***
22868285-TAA-T 20706399-TAA-T 27×A***
15698757-G-GACAC 13586877-G-GACAC 24×AC***
13468586-C-T 11312910-C-T ***
22661493-A-ATG 20499607-A-ATG 26×TG***
58974855-C-T 56828708-C-T ***
18039366-ATTTT-A 15927486-ATTTT-A 30×T***
10989084-A-C ***
8389569-CTTTT-C 8521528-CTTTT-C 25×T***
13474508-A-G 11318832-A-G ***
6190730-T-C 6322689-T-C FTA26175 IR3_Dst ***
13489058-C-T 11333382-C-T ***
3050356-G-T 3182315-G-T ***
10654582-T-TTGAC ***
24386025-G-T 22239878-G-T ***
24386024-A-C 22239877-A-C ***
13394423-G-T 11238747-G-T ***
2856782-CTTT-C,CTTTT 2988741-CTTT-C,CTTTT 24×T***
22164360-G-T 20002474-G-T ***
5403266-C-CT 5535225-C-CT 15×T***
14102794-GTCTATCTATCTATCTA-G 11982088-GTCTATCTATCTATCTA-G 11×TCTA***
19048928-TAA-T,TA 16937048-TAA-T,TA 18×A***
5066032-T-TA 5197991-T-TA 10×A***
13453243-C-A 11297567-C-A ***
19331381-C-T 17219501-C-T ***
10866274-T-C ***
10961378-CCCCAC-C,GCCCAT ***
10759874-A-C ***
18035665-CTT-C 15923785-CTT-C 30×T***
27561660-T-TA 25415513-T-TA P1_Y2 11×A***
56828714-C-T ***
28370013-TAT-T,TAG 26223866-TAT-T,TAG P1_gr2 ***
14570756-ATTTT-A 12458956-ATTTT-A 22×T***
13453244-C-T 11297568-C-T ***
17538441-C-A 15426561-C-A ***
13468579-C-G 11312903-C-G ***
2812777-ATTT-A 2944736-ATTT-A 30×T***
16344495-TTTC-T 14232615-TTTC-T 6×TTC***
19331377-C-T 17219497-C-T ***
21651831-AATAT-A 19489945-AATAT-A 11×AT***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.

Age Analysis Information (work in progress)

AllMcDonaldYFull
Kit: 9011641497208993673318314886
Used in age calculations1497208993673318314886
Counts of SNPs3932
Variant counts last updated 2022-07-29 02:41:46.



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