O'Loughlin

FTDNA: 93878, BigY2: 93878

Tree Position

R-P312/S116 > Z290 > L21/S145 > S552 > DF13 > ZZ10 > Z253 > Z2534 > BY25450 > FGC5618 > FGC5629 > L226 > FGC5660 > Z17669 > A10950 > DC29 > DC362 > 17706701-T-C > DC168

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19) POS-REF-ALT (hg38) Blocks Names Region McDonald BED combBED STRFTDNA
93878		BigY2
93878
19839933-A-AT 17728053-A-AT P5_Prx 10×TA*
6861894-A-G 6993853-A-G DC169 YY++
7657875-G-T 7789834-G-T DC170 YY++
8867608-T-C 8999567-T-C DC171 Y++
13254750-G-A 11099074-G-A DC172 ++
18021073-C-T 15909193-C-T DC174 Y++
18096054-G-A 15984174-G-A DC175 YY++
18711984-C-T 16600104-C-T DC176 YY++
23146570-G-T 20984684-G-T DC178 YY++
22253879-T-C 20091993-T-C FT453652 DYZ19 ****
24600415-T-C 22454268-T-C FGC37396 P3_t2 ****
9757474-GTA-G 9919865-GTA-G **
24205511-TGC-T 22059364-TGC-T P3_b1 **
17920810-C-T 15808930-C-T PR2690 ****
8398840-CAAAA-C 8530799-CAAAA-C 17×A**
13484502-G-A 11328826-G-A **
2884885-C-T 3016844-C-T CTS303 **
7321418-C-T 7453377-C-T PF3635 CTS1301 ****
2931840-ATG-A 3063799-ATG-A **
8154161-C-T 8286120-C-T **
7257436-A-G 7389395-A-G Z13346 **
23234083-TTA-T 21072197-TTA-T **
16451785-C-A 14339905-C-A **
22808722-C-T 20646836-C-T S2555FGC19136 SK1265 Y13464 **
17945431-AT-A 15833551-AT-A 10×T**
15676834-C-T 13564954-C-T F20018 **
22858993-G-A 20697107-G-A FGC30845 **
21135182-C-A 18973296-C-A BY56966BY130605 **
58980487-CCACAT-C 56834340-CCACAT-C **
25964728-T-C 23818581-T-C P1_Y1 **
22436200-T-C 20274314-T-C DYZ19 **
58974933-T-C 56828786-T-C **
6967735-A-G 7099694-A-G **
16692071-C-A 14580191-C-A 9×A**
23801717-G-A 21639831-G-A **
9456589-AC-A 9618980-AC-A **
9456593-A-C 9618984-A-C **
10959781-T-A **
6697192-C-A 6829151-C-A **
25333912-A-T 23187765-A-T P2_r1 **
8730898-C-A 8862857-C-A **
24250893-CA-C 22104746-CA-C P3_b1 **
22637682-A-G 20475796-A-G **
10968498-C-A **
18926895-AAG-A 16815015-AAG-A **
10994152-C-T **
10994177-G-A **
10994182-C-CGCCAT **
10994192-T-TG **
10994196-A-T **
10994197-TA-T **
10994209-C-A **
10994210-C-T FT439590 **
10994239-C-T **
10994286-T-C **
10880343-A-T **
10880355-T-C **
56828801-T-G **
13485893-AC-A 11330217-AC-A **
19523414-C-A 17411534-C-A **
10747956-G-C FT429459 **
16192763-T-G 14080883-T-G **
17956056-CTTT-C 15844176-CTTT-C 13×T**
10770575-C-CT **
10770577-T-TCTAC **
16749725-G-GTT 14637845-G-GTT 16×T**
10677033-C-A **
28103973-G-T 25957826-G-T P1_Y2 **
56833150-C-A **
56834580-C-A **
10807295-C-T **
24871207-G-T 22725060-G-T IR1_R **
24424325-G-T 22278178-G-T **
7471467-C-A 7603426-C-A IR1_L **
7567943-CA-C 7699902-CA-C 8×A**
11000367-G-T **
10671214-A-G **
10816566-T-C FT432457 **
10834228-T-C **
28520700-A-T 26374553-A-T **
28520708-C-CA 26374561-C-CA **
24070915-A-G 21924768-A-G P3_b1 **
19531419-C-A 17419539-C-A **
8822701-C-A 8954660-C-A **
15401350-C-A 13289470-C-A **
17920822-G-A 15808942-G-A **
19479747-T-A 17367867-T-A **
6012858-C-A 6144817-C-A **
14776898-T-A 12664967-T-A **
13467702-C-A 11312026-C-A **
18491642-A-T 16379762-A-T P6_Dst **
13326264-C-A 11170588-C-A **
6663148-C-A 6795107-C-A **
22655186-A-G 20493300-A-G **
8164897-G-A 8296856-G-A **
19250711-AT-A 17138831-AT-A **
18572723-G-T 16460843-G-T **
18572728-T-C 16460848-T-C **
28714489-C-A 26568342-C-A **
25333901-G-A 23187754-G-A P2_r1 **
11024431-T-C FT439965 **
25918857-T-TC 23772710-T-TC P1_Y1 **
15288156-C-T 13176255-C-T **
15288157-A-G 13176256-A-G **
15288161-T-C 13176260-T-C **
15288162-G-A 13176261-G-A **
15288165-C-T 13176264-C-T FT72174 **
16077540-AAGC-A 13965660-AAGC-A **
10770522-C-G **
10770527-C-G **
10770529-A-C **
10770534-A-G **
10770590-C-CTCCTG **
27761296-A-AG 25615149-A-AG P1_Y2 **
7330309-C-A 7462268-C-A **
16054252-CT-C 13942372-CT-C **
5214424-C-A 5346383-C-A **
14621621-C-A 12509819-C-A **
16581187-C-A 14469307-C-A **
8140385-G-T 8272344-G-T **
10921552-A-T **
2833221-C-A 2965180-C-A **
56828796-T-C **
28594145-C-CT 26447998-C-CT 8×T**
10799746-C-A **
16211146-C-A 14099266-C-A **
21772519-C-A 19610633-C-A **
7861470-C-A 7993429-C-A **
10787305-C-A **
2667371-T-C 2799330-T-C **
2705100-C-T 2837059-C-T **
2705444-G-T 2837403-G-T **
2719127-G-A 2851086-G-A Z44534 **
2719127-GC-G 2851086-GC-G **
2719136-G-A 2851095-G-A **
2725636-T-C 2857595-T-C **
2735898-C-A 2867857-C-A **
2739008-A-G 2870967-A-G **
2773797-C-A 2905756-C-A **
2811408-ATGT-A 2943367-ATGT-A **
2811414-G-T 2943373-G-T **
2811417-T-G 2943376-T-G **
2811420-T-TCTG 2943379-T-TCTG **
2811423-A-G 2943382-A-G **
2814805-G-A 2946764-G-A **
2814807-A-G 2946766-A-G **
2814808-A-G 2946767-A-G **
2814809-C-T 2946768-C-T **
2814821-C-T 2946780-C-T **
2868999-G-T 3000958-G-T **
2873937-A-T 3005896-A-T **
2882615-C-A 3014574-C-A **
2908137-A-AT 3040096-A-AT **
3345807-T-G 3477766-T-G **
3389158-A-C 3521117-A-C **
3467420-C-A 3599379-C-A **
3644556-C-A 3776515-C-A **
3683815-C-A 3815774-C-A **
3834820-G-A 3966779-G-A **
3870917-G-A 4002876-G-A **
4063963-C-G 4195922-C-G **
4652280-C-A 4784239-C-A **
4700729-C-A 4832688-C-A **
4786172-A-G 4918131-A-G **
4937435-G-T 5069394-G-T **
5199808-C-A 5331767-C-A **
5221027-A-C 5352986-A-C **
5235405-CTTTTT-C 5367364-CTTTTT-C 31×T**
5577224-C-A 5709183-C-A **
5586976-G-T 5718935-G-T **
5784202-C-A 5916161-C-A **
5864521-A-T 5996480-A-T **
5873788-A-G 6005747-A-G **
5926973-T-C 6058932-T-C **
6368888-A-G 6500847-A-G **
6368962-A-G 6500921-A-G **
6368997-A-C 6500956-A-C **
6369035-A-G 6500994-A-G **
6394424-C-A 6526383-C-A **
6402370-C-A 6534329-C-A **
6626990-C-A 6758949-C-A **
6801143-A-G 6933102-A-G **
6838507-G-A 6970466-G-A **
6873302-C-A 7005261-C-A **
6888543-C-T 7020502-C-T **
6897512-C-A 7029471-C-A **
6956308-C-A 7088267-C-A **
6967745-T-C 7099704-T-C **
6967758-A-G 7099717-A-G **
6996852-C-A 7128811-C-A **
7018024-C-A 7149983-C-A **
7052410-G-T 7184369-G-T **
7081909-C-G 7213868-C-G **
7166698-C-T 7298657-C-T **
7183220-AT-A 7315179-AT-A **
7196666-C-A 7328625-C-A **
7243133-G-A 7375092-G-A **
7244191-C-A 7376150-C-A **
7263680-C-A 7395639-C-A **
7279588-C-A 7411547-C-A **
7289474-C-A 7421433-C-A **
7301756-A-G 7433715-A-G **
7318736-C-A 7450695-C-A **
7319092-T-C 7451051-T-C **
7387419-G-TTT 7519378-G-TTT **
7400339-C-A 7532298-C-A **
7414029-G-A 7545988-G-A **
7427911-C-A 7559870-C-A **
7474015-G-A 7605974-G-A IR1_L **
7568877-G-T 7700836-G-T FT263671 **
7579152-C-A 7711111-C-A **
7581910-C-A 7713869-C-A **
7590701-C-A 7722660-C-A **
7636498-C-A 7768457-C-A **
7641883-C-A 7773842-C-A **
7650657-A-C 7782616-A-C **
7694716-C-A 7826675-C-A **
7719556-T-G 7851515-T-G **
7738157-C-T 7870116-C-T **
7750670-C-A 7882629-C-A **
7756411-T-C 7888370-T-C **
7770369-G-A 7902328-G-A **
7851935-C-A 7983894-C-A **
7853083-C-A 7985042-C-A **
7856924-C-A 7988883-C-A **
7891288-C-A 8023247-C-A **
7927908-C-A 8059867-C-A **
7930999-C-A 8062958-C-A **
7947147-C-A 8079106-C-A **
8045383-A-G 8177342-A-G **
8085279-A-G 8217238-A-G **
8164913-T-G 8296872-T-G **
8198190-C-T 8330149-C-T **
8209460-A-G 8341419-A-G **
8217893-T-A 8349852-T-A **
8238315-A-G 8370274-A-G **
8302965-C-A 8434924-C-A **
8347876-G-T 8479835-G-T **
8369506-T-C 8501465-T-C **
8415034-T-C 8546993-T-C **
8434645-G-T 8566604-G-T **
8435110-G-C 8567069-G-C **
8525181-C-A 8657140-C-A **
8628484-C-A 8760443-C-A **
8651041-C-A 8783000-C-A **
8674216-C-A 8806175-C-A FT254561 **
8694262-C-T 8826221-C-T **
8723520-C-A 8855479-C-A **
8799692-A-G 8931651-A-G **
8822256-A-G 8954215-A-G **
8822510-C-A 8954469-C-A **
8846636-A-G 8978595-A-G **
8852882-G-C 8984841-G-C **
8977858-A-T 9140249-A-T **
9026016-G-T 9188407-G-T **
9044091-C-A 9206482-C-A **
9057224-C-A 9219615-C-A **
9063817-A-G 9226208-A-G **
9115225-A-G 9277616-A-G **
9385545-C-A 9547936-C-A **
9427745-C-T 9590136-C-T **
9448444-C-A 9610835-C-A **
9456112-CA-C 9618503-CA-C **
9461534-G-T 9623925-G-T **
9475795-AAAAT-A 9638186-AAAAT-A **
9520366-C-A 9682757-C-A **
9540246-C-CTTT 9702637-C-CTTT IR3_Prx 18×T**
9593036-A-G 9755427-A-G IR3_Prx **
9629234-T-TGC 9791625-T-TGC IR3_Prx **
9771142-C-A 9933533-C-A **
9847486-G-C 10009877-G-C **
9919876-C-A 10082267-C-A **
9953413-A-G 10115804-A-G **
9958125-CA-C 10120516-CA-C **
10010353-G-A 10172744-G-A **
10013426-A-C 10175817-A-C **
10029499-A-G 10191890-A-G FT376564 **
10050728-G-C 10213119-G-C **
10652309-C-A **
10657404-C-T **
10747961-C-CA **
10754747-CTCCAT-C **
10767943-C-T **
10767952-A-T **
10767960-T-G **
10767965-C-G **
10767968-C-T **
10772032-A-T **
10776939-G-T **
10787544-TTGCAC-T **
10798176-G-T **
10799722-C-T **
10799727-T-C **
10799741-G-A FT47241FT191148 **
10799757-C-T **
10816528-A-AGTTTT **
10816532-C-A **
10816542-C-T **
10816553-A-C **
10834196-C-G **
10859631-A-T **
10859632-T-A **
10911350-T-A **
10971977-C-G **
10997311-GCATTC-G **
10999437-T-C **
11003702-C-G **
11024438-T-G **
11024446-T-C **
13194679-C-A 11039003-C-A **
13196306-T-C 11040630-T-C **
13196320-A-T 11040644-A-T **
13208105-C-A 11052429-C-A **
13212705-C-G 11057029-C-G **
13215958-C-A 11060282-C-A **
13224231-C-A 11068555-C-A **
13227784-A-G 11072108-A-G **
13229913-T-C 11074237-T-C **
13299548-C-A 11143872-C-A **
13311431-C-A 11155755-C-A **
13456358-C-A 11300682-C-A **
13459782-C-A 11304106-C-A **
13478089-C-A 11322413-C-A **
13483434-C-G 11327758-C-G **
13571206-G-T 11415530-G-T **
13624442-C-G 11468766-C-G **
13643935-G-C 11488259-G-C **
13721289-C-T 11565613-C-T DYZ17 **
11651676-G-T DYZ17 **
11659186-G-A DYZ17 **
11671652-A-T DYZ17 **
13819447-GC-G 11698741-GC-G DYZ17 **
13839710-C-A 11719004-C-A DYZ17 **
13855620-G-A 11734914-G-A FT9018 DYZ17 **
13858482-ACG-A 11737776-ACG-A DYZ17 **
13858489-A-T 11737783-A-T DYZ17 **
13917311-T-C 11796605-T-C **
13921740-A-G 11801034-A-G **
13942939-C-A 11822233-C-A **
13946339-C-A 11825633-C-A **
13963803-C-A 11843097-C-A **
13982841-C-A 11862135-C-A **
14005142-C-A 11884436-C-A **
14018537-C-A 11897831-C-A **
14052828-T-C 11932122-T-C **
14052832-G-A 11932126-G-A **
14052836-A-ATT 11932130-A-ATT **
14052849-C-T 11932143-C-T **
14061573-C-G 11940867-C-G **
14061587-G-C 11940881-G-C **
14098032-C-A 11977326-C-A **
14101925-C-A 11981219-C-A **
14143920-C-T 12023214-C-T **
14181223-T-C 12060517-T-C **
14220114-C-A 12099408-C-A **
14286181-C-A 12165475-C-A **
14296329-T-A 12175623-T-A **
14303002-A-T 12182296-A-T **
14369246-A-G 12248542-A-G **
14371187-A-T 12250483-A-T **
14415896-C-A 12295193-C-A **
14439668-T-C 12318941-T-C **
14442872-C-A 12322145-C-A **
14450542-C-A 12329815-C-A **
14513869-T-C 12402074-T-C **
14515134-C-T 12403339-C-T **
14515147-C-G 12403352-C-G **
14515156-A-C 12403361-A-C **
14516374-T-C 12404575-T-C **
14519606-C-A 12407807-C-A **
14530270-C-A 12418471-C-A **
14538805-C-A 12427006-C-A **
14572096-C-A 12460296-C-A **
14614451-C-A 12502649-C-A **
14621617-G-A 12509815-G-A **
14621629-A-C 12509827-A-C **
14621632-T-G 12509830-T-G **
14646351-C-G 12534415-C-G **
14660411-T-C 12548476-T-C **
14660423-C-G 12548488-C-G **
14660429-A-G 12548494-A-G **
14717602-G-C 12605670-G-C **
14723825-T-C 12611893-T-C **
14743139-A-G 12631207-A-G **
14781100-C-A 12669170-C-A **
14807467-C-A 12695538-C-A **
14852929-C-A 12740995-C-A **
14880324-C-T 12768394-C-T **
15177439-C-A 13065525-C-A **
15179171-C-A 13067257-C-A **
15194481-C-A 13082567-C-A **
15208159-G-T 13096245-G-T **
15333995-G-A 13222113-G-A **
15358027-A-G 13246146-A-G **
15363867-C-G 13251987-C-G **
15401881-A-C 13290001-A-C **
15406905-A-C 13295025-A-C **
15443774-C-CA 13331894-C-CA 8×A**
15462792-G-T 13350912-G-T **
15508017-A-C 13396137-A-C **
15508025-T-C 13396145-T-C **
15508029-T-C 13396149-T-C **
15527612-C-A 13415732-C-A **
15527644-C-A 13415764-C-A **
15542596-A-C 13430716-A-C **
15559111-T-G 13447231-T-G **
15578876-C-A 13466996-C-A **
15662834-C-A 13550954-C-A **
15732002-C-A 13620122-C-A **
15792613-C-A 13680733-C-A **
15863081-C-A 13751201-C-A **
15926659-C-A 13814779-C-A **
15937414-C-T 13825534-C-T **
16041046-G-A 13929166-G-A **
16057927-C-A 13946047-C-A **
16065067-G-T 13953187-G-T **
16095586-G-A 13983706-G-A **
16117483-T-TA 14005603-T-TA P8_Prx **
16188874-C-A 14076994-C-A **
16294957-C-A 14183077-C-A **
16295098-G-A 14183218-G-A **
16405246-A-G 14293366-A-G FT180675 **
16424443-G-T 14312563-G-T **
16429210-TAA-T 14317330-TAA-T 11×A**
16437282-C-A 14325402-C-A **
16454620-C-A 14342740-C-A **
16507553-A-G 14395673-A-G **
16583369-A-G 14471489-A-G **
16589241-A-G 14477361-A-G **
16589245-C-G 14477365-C-G **
16602795-A-C 14490915-A-C **
16616186-C-A 14504306-C-A **
16652998-A-G 14541118-A-G **
16707388-G-T 14595508-G-T **
16746357-C-A 14634477-C-A **
16747716-C-A 14635836-C-A **
16765046-G-A 14653166-G-A **
16765078-A-G 14653198-A-G **
16765735-T-C 14653855-T-C **
16778072-C-T 14666192-C-T **
16854377-C-A 14742497-C-A **
16887095-C-A 14775215-C-A **
16909400-T-C 14797520-T-C **
16950316-C-A 14838436-C-A **
16960067-A-T 14848187-A-T **
16966923-C-A 14855043-C-A **
17018870-C-A 14906990-C-A **
17023409-G-T 14911529-G-T **
17091750-T-A 14979870-T-A **
17155892-G-A 15044012-G-A M10521 **
17159044-T-G 15047164-T-G **
17170451-C-A 15058571-C-A **
17175051-C-A 15063171-C-A **
17179752-A-G 15067872-A-G **
17204311-A-C 15092431-A-C **
17216074-A-G 15104194-A-G **
17303777-C-A 15191897-C-A **
17343880-T-C 15232000-T-C **
17372459-C-A 15260579-C-A **
17383575-G-T 15271695-G-T **
17388334-C-G 15276454-C-G **
17395638-A-G 15283758-A-G **
17436445-G-A 15324565-G-A **
17461372-C-A 15349492-C-A **
17572587-C-A 15460707-C-A **
17580723-C-A 15468843-C-A **
17603284-C-A 15491404-C-A **
17650270-A-G 15538390-A-G **
17715559-A-G 15603679-A-G **
17716192-G-T 15604312-G-T **
17717307-A-G 15605427-A-G **
17749359-C-A 15637479-C-A **
17764663-C-A 15652783-C-A **
17774985-G-T 15663105-G-T **
17798995-T-G 15687115-T-G **
17803251-A-C 15691371-A-C **
17834379-G-T 15722499-G-T **
17920774-C-T 15808894-C-T **
17920785-AC-A 15808905-AC-A **
17920800-T-G 15808920-T-G **
17920803-G-A 15808923-G-A **
17920812-G-T 15808932-G-T **
17927515-C-T 15815635-C-T FGC16606 **
17940062-C-A 15828182-C-A **
18022553-A-G 15910673-A-G **
18035456-G-T 15923576-G-T **
18151811-G-T 16039931-G-T **
18205826-C-A 16093946-C-A **
18270103-A-G 16158223-A-G **
18352550-G-A 16240670-G-A P6_Prx **
18572731-T-G 16460851-T-G **
18572748-CAA-C 16460868-CAA-C **
18631928-C-A 16520048-C-A **
18723234-G-T 16611354-G-T **
18750651-C-G 16638771-C-G **
18779571-A-T 16667691-A-T **
18781995-C-T 16670115-C-T **
18782000-A-C 16670120-A-C **
18911515-T-C 16799635-T-C **
18926756-C-A 16814876-C-A **
18994449-C-A 16882569-C-A **
19022032-C-A 16910152-C-A **
19022488-T-C 16910608-T-C **
19054378-T-C 16942498-T-C **
19054419-C-A 16942539-C-A Y55282 **
19061249-G-T 16949369-G-T **
19143127-T-A 17031247-T-A **
19183838-TTTTTG-T 17071958-TTTTTG-T **
19194115-C-A 17082235-C-A **
19194222-T-A 17082342-T-A **
19201586-C-A 17089706-C-A **
19253073-A-G 17141193-A-G **
19254727-C-A 17142847-C-A **
19322162-C-A 17210282-C-A **
19330349-A-G 17218469-A-G **
19411696-G-A 17299816-G-A FTB67200 **
19431416-C-A 17319536-C-A **
19444681-A-C 17332801-A-C **
19532322-A-C 17420442-A-C FT164024 **
19537761-G-T 17425881-G-T **
19562645-T-C 17450765-T-C **
19677805-C-A 17565925-C-A P5_Prx **
19899633-G-GAAGA 17787753-G-GAAGA P5_Prx **
20045284-A-AAGAG 17933404-A-AAGAG P5_Prx **
20386769-A-AT 18224883-A-AT P5_Dst **
20434658-C-A 18272772-C-A P5_Dst **
20614871-G-T 18452985-G-T P4_Prx **
20628990-A-C 18467104-A-C P4_Prx **
20774944-A-T 18613058-A-T P4_Prx **
20820549-C-A 18658663-C-A P4_Gap **
21039465-C-A 18877579-C-A **
21039543-C-A 18877657-C-A **
21151617-T-C 18989731-T-C **
21155375-C-A 18993489-C-A **
21161442-G-A 18999556-G-A **
21203241-A-G 19041355-A-G **
21224900-C-A 19063014-C-A **
21244770-C-A 19082884-C-A **
21256037-G-T 19094151-G-T **
21317830-G-T 19155944-G-T **
21328258-T-C 19166372-T-C **
21328261-C-T 19166375-C-T **
21328264-C-T 19166378-C-T **
21328274-T-C 19166388-T-C **
21397503-C-A 19235617-C-A **
21489701-C-A 19327815-C-A **
21534825-T-C 19372939-T-C **
21729177-T-C 19567291-T-C **
21824970-T-A 19663084-T-A **
21828422-C-A 19666536-C-A **
21909710-C-A 19747824-C-A **
22037685-T-C 19875799-T-C **
22061050-C-A 19899164-C-A **
22092217-T-C 19930331-T-C **
22114874-A-G 19952988-A-G **
22114876-A-C 19952990-A-C **
22114879-A-T 19952993-A-T **
22114882-T-A 19952996-T-A **
22177662-T-C 20015776-T-C **
22229283-A-T 20067397-A-T DYZ19 **
22262254-A-G 20100368-A-G DYZ19 **
22356887-C-T 20195001-C-T DYZ19 **
22356903-AG-A 20195017-AG-A DYZ19 **
22453085-C-A 20291199-C-A DYZ19 **
22489792-C-T 20327906-C-T DYZ19 **
22587732-A-C 20425846-A-C **
22628355-A-T 20466469-A-T **
22637686-G-A 20475800-G-A **
22637690-T-G 20475804-T-G **
22637694-A-G 20475808-A-G **
22783062-C-A 20621176-C-A **
22965230-T-A 20803344-T-A **
22988546-G-T 20826660-G-T **
23048210-C-A 20886324-C-A **
23187239-T-C 21025353-T-C **
23253801-C-A 21091915-C-A **
23255376-C-A 21093490-C-A **
23259385-C-A 21097499-C-A **
23439998-G-T 21278112-G-T **
23447400-C-T 21285514-C-T **
23509145-C-A 21347259-C-A **
23733791-A-G 21571905-A-G **
23754769-C-T 21592883-C-T **
23807882-A-G 21645996-A-G **
23807894-A-C 21646008-A-C **
23831528-A-C 21669642-A-C **
24008100-C-A 21861953-C-A **
24070877-G-T 21924730-G-T P3_b1 **
24070878-A-T 21924731-A-T P3_b1 **
24070888-T-C 21924741-T-C P3_b1 **
24070889-G-A 21924742-G-A P3_b1 **
24070894-C-T 21924747-C-T P3_b1 **
24070895-A-G 21924748-A-G P3_b1 **
24070896-C-T 21924749-C-T FT460864 P3_b1 **
24274324-T-A 22128177-T-A P3_b1 **
24390107-T-A 22243960-T-A **
24401847-C-A 22255700-C-A **
26106003-G-T 23959856-G-T P1_Y1 **
26161194-T-TG 24015047-T-TG P1_Y1 **
26325335-C-A 24179188-C-A P1_Y1 **
26419180-C-A 24273033-C-A P1_Y1 **
26626445-T-A 24480298-T-A P1_g2 **
27543578-G-A 25397431-G-A P1_Y2 **
27583238-G-C 25437091-G-C P1_Y2 **
28591359-C-G 26445212-C-G **
28592853-C-A 26446706-C-A **
28640874-G-C 26494727-G-C **
28674661-G-C 26528514-G-C **
28707398-C-A 26561251-C-A **
28715965-C-A 26569818-C-A **
28767730-C-A 26621583-C-A **
28793781-T-C 26647634-T-C **
56826273-A-T **
56830294-A-T **
56833263-C-A **
56833298-C-G **
56833315-C-G **
56833326-C-A **
56833371-C-CATTCA **
56836822-C-A **
56868395-C-A **
9654345-A-T 9816736-A-T IR3_Prx ***
22357669-G-T 20195783-G-T DYZ19 ***
7517715-T-TA 7649674-T-TA 10×A***
6958069-C-A 7090028-C-A ******
9368295-C-G 9530686-C-G ***
13446661-A-T 11290985-A-T ***
18884062-CCT-C 16772182-CCT-C 8×CT***
16641809-ATG-A 14529929-ATG-A ***
20045273-GA-G,GAAAG 17933393-GA-G,GAAAG P5_Prx ***
13487369-T-A 11331693-T-A ***
21890846-C-T 19728960-C-T ***
16308918-G-T 14197038-G-T ***
24383530-CAAAA-C 22237383-CAAAA-C 15×A***
10971916-C-G ***
10942684-C-T ***
22903087-A-C 20741201-A-C ***
11014476-C-T ***
11014481-C-G ***
2861534-C-CA 2993493-C-CA 25×A***
26440493-G-T 24294346-G-T P1_Y1 ***
14218856-C-A 12098150-C-A ***
23264332-C-A 21102446-C-A ***
13716690-A-C 11561014-A-C DYZ17 8×GGAAT***
17673099-C-A 15561219-C-A ***
19469845-TTC-T,TTCTC 17357965-TTC-T,TTCTC 14×TC***
11643798-A-G,T DYZ17 ***
21117259-CA-C,CAA 18955373-CA-C,CAA 14×A***
23773373-T-C 21611487-T-C FT6471 ***
13522220-G-T 11366544-G-T ***
2718881-CTTTTTT-C,CTTTTTTT 2850840-CTTTTTT-C,CTTTTTTT 21×T***
2859987-CT-C,CTTT 2991946-CT-C,CTTT 16×T***
4503091-T-G 4635050-T-G ***
4630847-A-G 4762806-A-G ***
5818041-C-A 5950000-C-A ***
6355542-G-T 6487501-G-T ***
6647815-T-C 6779774-T-C ***
6796465-C-A 6928424-C-A ***
6880103-C-A 7012062-C-A ***
6884953-C-A 7016912-C-A ***
6982322-C-A 7114281-C-A ***
7172109-G-T 7304068-G-T ***
7183253-C-A 7315212-C-A ***
7234180-C-A 7366139-C-A ***
7237388-C-A 7369347-C-A ***
7334838-T-A 7466797-T-A ***
7335422-C-A 7467381-C-A ***
7418849-G-T 7550808-G-T ***
7645021-G-T 7776980-G-T ***
7651404-C-A 7783363-C-A ***
7662855-A-T 7794814-A-T ***
7681113-AGATTC-A 7813072-AGATTC-A ***
7731283-C-A 7863242-C-A ***
7740000-C-A 7871959-C-A ***
7760091-G-T 7892050-G-T ***
7885332-C-A 8017291-C-A ***
7979496-G-A 8111455-G-A ***
8028882-C-A 8160841-C-A ***
8122049-C-A 8254008-C-A ***
8271412-C-A 8403371-C-A ***
8348969-C-A 8480928-C-A ***
8475805-TG-T 8607764-TG-T ***
8498731-A-AT 8630690-A-AT 10×T***
8499520-C-A 8631479-C-A ***
8517186-C-A 8649145-C-A ***
8530687-C-T 8662646-C-T ***
8555824-C-A 8687783-C-A ***
8631383-CTTTTTTTT-C,CTTTT 8763342-CTTTTTTTT-C,CTTTT 26×T***
8632662-C-A 8764621-C-A ***
8676179-C-A 8808138-C-A ***
8687075-T-A 8819034-T-A ***
8773858-CAAA-C,CAA 8905817-CAAA-C,CAA 16×A***
8806490-G-A 8938449-G-A ***
8835791-C-A 8967750-C-A ***
8876568-C-A 9008527-C-A ***
9039974-C-G 9202365-C-G ***
9048211-C-CAG 9210602-C-CAG ***
9048223-T-G 9210614-T-G ***
9382915-C-A 9545306-C-A ***
9605167-T-G 9767558-T-G IR3_Prx ***
9751205-G-T 9913596-G-T ***
9817303-G-T 9979694-G-T ***
9902751-C-T 10065142-C-T ***
10006873-G-GAA 10169264-G-GAA 11×A***
10037086-G-A 10199477-G-A ***
10627546-TCCATCCCAC-T ***
10627702-C-A ***
10959248-T-A ***
11004523-G-T ***
11014506-C-T ***
11014507-C-G ***
11014512-C-G ***
13194890-C-A 11039214-C-A BY209870 ***
13243077-C-A 11087401-C-A ***
13453840-C-A 11298164-C-A 10×TCCAT***
13466923-C-A 11311247-C-A ***
13485901-C-A 11330225-C-A ***
13642617-C-A 11486941-C-A ***
13885857-CTTT-C,CTT 11765151-CTTT-C,CTT 19×T***
14073013-C-A 11952307-C-A ***
14322111-T-C 12201405-T-C ***
14333695-G-A 12212989-G-A ***
14357562-A-G 12236857-A-G ***
14577278-T-C 12465478-T-C ***
14712757-G-T 12600824-G-T ***
14877150-T-C 12765220-T-C ***
15136043-C-A 13024130-C-A ***
15136211-C-A 13024298-C-A ***
15239239-C-A 13127325-C-A ***
15260684-CTTT-C,CTT 13148768-CTTT-C,CTT 25×T***
15308293-C-A 13196395-C-A ***
15527356-G-A 13415476-G-A ***
15558207-TA-T 13446327-TA-T 8×A***
15585940-G-C 13474060-G-C ***
15604321-T-C 13492441-T-C ***
15656659-C-A 13544779-C-A ***
15758248-G-A 13646368-G-A ***
16045955-A-T 13934075-A-T ***
16228274-A-T 14116394-A-T ***
16447202-C-G 14335322-C-G ***
16451882-T-C 14340002-T-C ***
16487105-G-T 14375225-G-T ***
16649752-C-A 14537872-C-A ***
16784227-A-G 14672347-A-G ***
16784229-C-A 14672349-C-A ***
16796916-C-A 14685036-C-A ***
16912777-C-A 14800897-C-A ***
16981948-G-C 14870068-G-C ***
17056957-A-T 14945077-A-T ***
17168520-G-A 15056640-G-A ***
17197731-C-A 15085851-C-A ***
17197736-A-G 15085856-A-G ***
17207315-T-C 15095435-T-C ***
17223888-C-A 15112008-C-A ***
17272618-C-G 15160738-C-G ***
17364289-C-A 15252409-C-A ***
17550680-C-A 15438800-C-A ***
17860129-G-A 15748249-G-A ***
18038770-C-A 15926890-C-A ***
18052247-C-A 15940367-C-A ***
18060829-C-A 15948949-C-A ***
18064504-C-A 15952624-C-A ***
18096226-T-C 15984346-T-C ***
18100652-C-A 15988772-C-A BY165245 ***
18176815-T-C 16064935-T-C ***
18615932-CTT-C,CT 16504052-CTT-C,CT 27×T***
18634325-A-G 16522445-A-G ***
18739476-C-A 16627596-C-A ***
18750464-A-T 16638584-A-T ***
18961367-GC-G 16849487-GC-G ***
19059524-C-A 16947644-C-A ***
19206044-C-A 17094164-C-A ***
19217291-T-C 17105411-T-C ***
19449428-GAAAAAAAAA-G,GAAAAAAAA 17337548-GAAAAAAAAA-G,GAAAAAAAA 23×A***
19495516-C-A 17383636-C-A ***
19514989-C-A 17403109-C-A ***
19529129-TTC-A 17417249-TTC-A ***
19625260-C-A 17513380-C-A P5_Prx ***
20833936-T-A 18672050-T-A P4_Gap ***
21298306-G-A 19136420-G-A ***
21455941-A-G 19294055-A-G ***
21650698-T-C 19488812-T-C ***
21650998-C-A 19489112-C-A ***
21919241-C-A 19757355-C-A ***
21972441-G-A 19810555-G-A ***
22118821-A-G 19956935-A-G ***
22127973-TTC-T,TTT 19966087-TTC-T,TTT ***
22171482-G-T 20009596-G-T ***
22601296-C-A 20439410-C-A ***
22658836-G-C 20496950-G-C ***
22665756-G-C 20503870-G-C ***
22793197-C-A 20631311-C-A ***
22803074-C-A 20641188-C-A ***
22808719-C-A 20646833-C-A ***
22897963-C-A 20736077-C-A ***
22904877-A-G 20742991-A-G ***
22911790-C-A 20749904-C-A ***
22948308-C-A 20786422-C-A ***
23061381-C-T 20899495-C-T ***
23137695-C-A 20975809-C-A ***
23198934-C-A 21037048-C-A ***
23282254-T-C 21120368-T-C ***
23343537-C-T 21181651-C-T ***
23345405-C-A 21183519-C-A ***
23374877-C-A 21212991-C-A ***
23377040-G-A 21215154-G-A ***
23572872-C-A 21410986-C-A ***
23957856-A-T 21811709-A-T ***
24071509-C-A 21925362-C-A P3_b1 ***
24878681-T-C 22732534-T-C g1 ***
28741386-C-A 26595239-C-A ***
28811845-GGATAA-G 26665698-GGATAA-G ***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.