Tree Position

R-P312/S116 > Z40481 > ZZ11 > U152/S28 > L2/S139 > Z41150 > Z49 > Z142/S211 > Z51

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19) POS-REF-ALT (hg38) Blocks Names Region McDonald BED combBED STRBigY3
16116014-G-C 14004134-G-C P8_Prx A+
56831879-A-C A*
26199711-A-G 24053564-A-G P1_Y1 A*
19663331-G-A 17551451-G-A P5_Prx A*
22305208-G-T 20143322-G-T DYZ19 A*
6143249-A-C 6275208-A-C IR3_Dst A*
25523540-A-G 23377393-A-G P1_gr1 A*
25537656-C-T 23391509-C-T P1_gr1 A*
25537826-T-A 23391679-T-A P1_gr1 A*
18411877-G-GA 16299997-G-GA P6_Gap 10×AA*
25940483-G-T 23794336-G-T P1_Y1 A*
25590232-G-A 23444085-G-A P1_gr1 A*
26290026-C-T 24143879-C-T P1_Y1 A*
26497214-G-A 24351067-G-A P1_Y1 A*
19704389-G-T 17592509-G-T P5_Prx A*
5124525-C-T 5256484-C-T FT83000 +
4991889-C-T 5123848-C-T FT82956 +
4891726-G-C 5023685-G-C FT82935 +
4872201-A-G 5004160-A-G FT82932 +
15814440-G-C 13702560-G-C FT83739 YY+
15748923-G-A 13637043-G-A FT83727 Y+
15737011-G-A 13625131-G-A FT83724 YY+
15981645-C-A 13869765-C-A FT83746 YY+
6397124-A-G 6529083-A-G FT83284 +
6652555-T-C 6784514-T-C YY+
6869140-G-C 7001099-G-C FT83353 YY+
16702033-G-A 14590153-G-A FT83804 Y+
6886797-T-A 7018756-T-A FT83355 YY+
15604708-G-C 13492828-G-C FT83709 YY+
7150146-A-G 7282105-A-G FT83377 Y+
7403743-C-CT 7535702-C-CT +
7821815-A-C 7953774-A-C FT83413 YY+
4512813-T-A 4644772-T-A FT82836 +
7983156-G-C 8115115-G-C FT83420 YY+
8045506-C-T 8177465-C-T FT83422 YY+
8668580-T-A 8800539-T-A FT83443 YY+
8685254-G-T 8817213-G-T FT83450 YY+
8789813-A-T 8921772-A-T FT83456 YY+
15549765-A-C 13437885-A-C FT83704 YY+
8839284-A-C 8971243-A-C YY+
8846156-T-C 8978115-T-C FT83458 YY+
15474961-T-A 13363081-T-A FT83700 YY+
14559462-C-T 12447663-C-T FT83645 Y+
13919669-T-C 11798963-T-C FT83535 Y+
4608499-C-T 4740458-C-T FT82858 +
3851386-A-AG 3983345-A-AG +
4506135-C-T 4638094-C-T FT82834 +
21491943-A-G 19330057-A-G FT84012 YY+
4629361-C-T 4761320-C-T Z22671 +
15388615-A-C 13276735-A-C BY19729M2837 YY+
23000936-C-T 20839050-C-T BY16472BY16458 YY+
23982050-G-A 21835903-G-A FT84169 Y+
22847353-A-C 20685467-A-C FT84108 YY+
22439907-A-C 20278021-A-C FT219843 DYZ19 +
4665329-T-A 4797288-T-A FT82871 +
4505557-C-T 4637516-C-T FT82833 +
21612481-G-A 19450595-G-A YY+
13941083-A-G 11820377-A-G FT233045 Y+
13233308-C-T 11077632-C-T FT219844 +
17317408-C-T 15205528-C-T FT83837 YY+
4273753-G-A 4405712-G-A FT82768 +
19125227-T-TA 17013347-T-TA +
17250443-G-A 15138563-G-A FT83833 Y+
2875852-G-A 3007811-G-A FT82358 YY+
2888988-G-C 3020947-G-C YY+
3162544-A-G 3294503-A-G FT82433 +
5298139-AT-A 5430098-AT-A *
18944373-AAAAAC-A 16832493-AAAAAC-A 7×AAAAC*
22299207-G-T 20137321-G-T DYZ19 *
28792170-G-T 26646023-G-T *
22237899-C-A 20076013-C-A DYZ19 *
22346124-G-T 20184238-G-T DYZ19 *
23448691-C-T 21286805-C-T **
20700795-C-A 18538909-C-A P4_Prx **
10629975-A-G **
22459364-A-C 20297478-A-C FT457504 DYZ19 **
15631282-CT-C 13519402-CT-C **
21967334-C-T 19805448-C-T **
19438291-AG-A 17326411-AG-A **
14128408-T-C 12007702-T-C **
15636127-C-CTAGT 13524247-C-CTAGT **
13278150-C-G 11122474-C-G **
18619128-A-T 16507248-A-T **
13140430-T-C 10629916-T-C **
10629972-C-G **
3461593-G-A 3593552-G-A **
4621047-G-A 4753006-G-A **
13475459-G-A 11319783-G-A **
13475458-A-T 11319782-A-T **
3371826-T-C 3503785-T-C FT214181 **
13475441-A-G 11319765-A-G **
13475439-G-C 11319763-G-C **
16729172-GTTTTT-G 14617292-GTTTTT-G 22×T**
13140488-C-T 10629974-C-T **
27998538-G-T 25852391-G-T P1_Y2 **
8791667-A-C 8923626-A-C FT215910 **
9172905-C-A 9335296-C-A **
9731602-C-T 9893993-C-T IR3_Prx **
10063984-T-C 10226375-T-C **
10629922-T-A **
13475472-C-T 11319796-C-T **
10629929-C-T **
10629933-T-A **
3920969-A-C 4052928-A-C **
22477712-T-C 20315826-T-C BY223870 DYZ19 ***
13475465-T-G 11319789-T-G ***
22443156-G-C 20281270-G-C DYZ19 ***
13475482-G-T 11319806-G-T ***
10914666-G-A ***
4056690-T-TA 4188649-T-TA 10×A***
10782883-CTCCATTCCAT-C ***
4511163-C-CA 4643122-C-CA 26×A***
28564233-T-C 26418086-T-C ***
28671737-T-A 26525590-T-A ***
21208259-A-G 19046373-A-G ***
10923616-C-CTATAG ***
13488432-T-A 11332756-T-A ***
17597174-TG-T 15485294-TG-T ***
5493864-GT-G,GTT 5625823-GT-G,GTT 22×T***
10927888-CCATTG-C,CCATTC ***
13223636-A-C 11067960-A-C ***
13470338-A-C 11314662-A-C ***
15557033-CAA-C,CAAAAA 13445153-CAA-C,CAAAAA 18×A***
14062809-CAT-C 11942103-CAT-C ***
7867895-A-G 7999854-A-G ***
6607858-T-C 6739817-T-C FT215287 ***
5999382-AACT-A 6131341-AACT-A ***
15750520-TCG-T 13638640-TCG-T ***
21966549-G-GTT 19804663-G-GTT 16×T***
5255568-G-A 5387527-G-A ***
4621072-G-A 4753031-G-A ***
4621065-G-A 4753024-G-A ***
27396966-A-T 25250819-A-T P1_g3 ***
10691377-CAT-C ***
14171527-T-A 12050821-T-A ***
14682260-C-T 12570326-C-T FT311902 ***
13461921-C-G 11306245-C-G ***
7867899-A-G 7999858-A-G ***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.

Age Analysis Information (work in progress)

Kit: 6915611496258693791138310739
Used in age calculations1496258693791138310739
Counts of SNPs3226
Variant counts last updated 2022-11-24 03:14:01.

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