Block Information

Upstream Blocks:

Children:

Displays:

Mutations in Block:

Names	Region	POS-ANC-DER (hg19)	POS-ANC-DER (hg38)	Notes
ZZ61				See notes below.
ZZ62				See notes below.
A19290	IR3_Prx	9577022-A-C	9739413-A-C	See notes below.

*Mutations whose exact position can't be determined precisely from NGS tests, such as those in palindromes, are shown with a pink background.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin, The Russian Journal of Genetic Genealogy (Русская версия), Vol 6, No 2 (2014)/Vol 7, No 1 (2015).

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.

Notes:

ZZ61

Mutation in the "teal" colored palindromic region. The mutation is one of the two possibilities ZZ61_1 or ZZ61_2.

Region	Names	POS-REF-ALT (hg19)	POS-REF-ALT (hg38)
P3_t1	ZZ61_1	24351501-G-T	22205354-G-T
P3_t2	ZZ61_2	24527211-C-A	22381064-C-A

ZZ62

This mutation is in the DYZ19 region. It is at one of two possible positions, ZZ62_1 or ZZ62_2. ZZ62_2 is not found in the hg19 or hg38 reference sequences and resides in some currently unsequenced region. In BigY VCF files, this mutation shows up as a mixtures of A and G reads at position hg19:22310969.

Region	Names	POS-REF-ALT (hg19)	POS-REF-ALT (hg38)
DYZ19	-	22310969-A-G	20149083-A-G
DYZ19	ZZ62_1 FGC72390	22432076-A-G	20270190-A-G

hg19:9577022-A-CA19290

This is technically a SNP, but it's an ugly one. It is at the junction between an STR and a homopolymer. I trust ZZ61 more than this SNP. This SNP also does not show up well in BigY results.

Haplotype Data

The data below reveals the progression of changes in the haplotype. These are the inferred ancestral haplotypes for various upstream blocks. These inferred haplotypes are a work in progress, and any suggested modifications are appreciated. Mutations made from each upstream block are shown in sequence. The cell color is determined by the block in which the mutation took place.