Upstream Blocks:

R-U106/S21 > Z2265 > Z18 > ZZ61

Children:

DF95, ZP24

Displays:

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All R-ZZ61 men
Generate a csv format spreadsheet of all downstream mutations.


Just for this block
This block and all downstream blocks
hg19 hg38

Mutations in Block:

NamesRegionUncMcDonald BEDcombBEDPOS-ANC-DER (hg19)POS-ANC-DER (hg38)Notes
ZZ61 See notes below.
ZZ62 See notes below.
A19290 IR3_Prx 9577022-A-C9739413-A-CSee notes below.

*Mutations whose exact position can't be determined precisely from NGS tests, such as those in palindromes, are shown with a pink background.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin, The Russian Journal of Genetic Genealogy (Русская версия), Vol 6, No 2 (2014)/Vol 7, No 1 (2015).

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.


Notes:

ZZ61
Mutation in the "teal" colored palindromic region. The mutation is one of the two possibilities ZZ61_1 or ZZ61_2.
RegionNamesPOS-REF-ALT (hg19)POS-REF-ALT (hg38)
P3_t1 ZZ61_1 24351501-G-T 22205354-G-T
P3_t2 ZZ61_2 24527211-C-A 22381064-C-A
ZZ62
This mutation is in the DYZ19 region. It is at one of two possible positions, ZZ62_1 or ZZ62_2. ZZ62_2 is not found in the hg19 or hg38 reference sequences and resides in some currently unsequenced region. In BigY VCF files, this mutation shows up as a mixtures of A and G reads at position hg19:22310969.
RegionNamesPOS-REF-ALT (hg19)POS-REF-ALT (hg38)
DYZ19 - 22310969-A-G 20149083-A-G
DYZ19 ZZ62_1 FGC72390 22432076-A-G 20270190-A-G
hg19:9577022-A-CA19290
This is technically a SNP, but it's an ugly one. It is at the junction between an STR and a homopolymer. I trust ZZ61 more than this SNP. This SNP also does not show up well in BigY results.

Haplotype Data

The data below reveals the progression of changes in the haplotype. These are the inferred ancestral haplotypes for various upstream blocks. These inferred haplotypes are a work in progress, and any suggested modifications are appreciated. Mutations made from each upstream block are shown in sequence. The cell color is determined by the block in which the mutation took place.

DYS393
DYS390
DYS19
DYS391
DYS385
DYS426
DYS388
DYS439
DYS389i
DYS392
DYS389ii
DYS458
DYS459
DYS455
DYS454
DYS447
DYS437
DYS448
DYS449
DYS464
DYS460
Y-GATA-H4
YCAII
DYS456
DYS607
DYS576
DYS570
CDY
DYS442
DYS438
DYS531
DYS578
DYF395S1
DYS590
DYS537
DYS641
DYS472
DYF406S1
DYS511
DYS425
DYS413
DYS557
DYS594
DYS436
DYS490
DYS534
DYS450
DYS444
DYS481
DYS520
DYS446
DYS617
DYS568
DYS487
DYS572
DYS640
DYS492
DYS565
DYS710
DYS485
DYS632
DYS495
DYS540
DYS714
DYS716
DYS717
DYS505
DYS556
DYS549
DYS589
DYS522
DYS494
DYS533
DYS636
DYS575
DYS638
DYS462
DYS452
DYS445
Y-GATA-A10
DYS463
DYS441
Y-GGAAT-1B07
DYS525
DYS712
DYS593
DYS650
DYS532
DYS715
DYS504
DYS513
DYS561
DYS552
DYS726
DYS635
DYS587
DYS643
DYS497
DYS510
DYS434
DYS461
DYS435

Age Analysis - Not yet completed for this block

MeasureAge (YBP)
Mean0.0
Median0.0
Mode0.0
Age analysis lasted updated . Only those men and blocks availble at that time were included in the analysis.
Aging parameters: allBED= allBED2=0 iainBED= iainBED2=0 combBED=0 combBED2=0 adjNumVars=0