Tree Position

R-P312/S116 > Z40481 > ZZ11 > U152/S28 > L2/S139 > DF110

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19) POS-REF-ALT (hg38) Blocks Names Region McDonald BED combBED STRBigY3
28817858-A-G 26671711-A-G A*
23715474-A-G 21553588-A-G A*
13687593-A-C 11531917-A-C A*
6275252-T-C 6407211-T-C IR3_Dst A*
18515295-T-C 16403415-T-C P6_Dst A*
18515296-G-A 16403416-G-A P6_Dst A*
19693450-C-T 17581570-C-T P5_Prx A*
22265389-T-A 20103503-T-A DYZ19 A*
23175240-T-C 21013354-T-C YA*
13451393-T-A 11295717-T-A A*
20486323-G-A 18324437-G-A P5_Dst A*
13449284-T-C 11293608-T-C A*
22231653-C-A 20069767-C-A DYZ19 A*
58982928-C-T 56836781-C-T A*
24247564-T-C 22101417-T-C P3_b1 A*
26028574-A-C 23882427-A-C P1_Y1 A*
24021961-T-C 21875814-T-C YA*
15868644-C-A 13756764-C-A YY+
18113578-T-C 16001698-T-C FT63334 YY+
17555594-C-T 15443714-C-T FT63284 YY+
17474219-C-T 15362339-C-T FT63275 YY+
17405134-T-C 15293254-T-C FT63266 YY+
13645220-C-G 11489544-C-G +
16600138-C-T 14488258-C-T FT63184 YY+
15927731-G-A 13815851-G-A FT63142 YY+
15659753-A-G 13547873-A-G FT63123 YY+
19165462-G-A 17053582-G-A ZS2228ZS2228 SK433 V3853 Y+
15472188-G-A 13360308-G-A FT63099 YY+
18401815-C-T 16289935-C-T FT63347 P6_Gap +
15248257-G-A 13136343-G-A FT63077 Y+
14388172-G-A 12267468-G-A FGC17385 YY+
13666393-A-G 11510717-A-G +
14339149-C-G 12218444-C-G FT63022 YY+
14279732-AT-A 12159026-AT-A +
15306706-T-C 13194808-T-C FT63085 YY+
23992602-C-T 21846455-C-T FGC7145 +
18418526-G-A 16306646-G-A FT63349 P6_Gap +
21777340-G-T 19615454-G-T FGC49987 BY9579 YY+
23551350-T-G 21389464-T-G FT63635 YY+
23503974-T-C 21342088-T-C FT63631 YY+
22662181-T-G 20500295-T-G FT63567 YY+
22445404-T-C 20283518-T-C FT200122 DYZ19 +
22437185-G-C 20275299-G-C FT200123 DYZ19 +
22270060-C-T 20108174-C-T FT200124 DYZ19 +
22155416-C-T 19993530-C-T FT63545 Y+
21985882-A-T 19823996-A-T FT63531 YY+
21473182-A-C 19311296-A-C FT63489 YY+
23996712-T-A 21850565-T-A FT63654 Y+
21293324-C-G 19131438-C-G FT63470 YY+
21190172-A-T 19028286-A-T FT63458 YY+
21069783-G-C 18907897-G-C FT63442 YY+
10918382-G-A FT200121 +
19543945-G-T 17432065-G-T FT63437 YY+
19301600-T-G 17189720-T-G FT63422 Y+
18569186-C-G 16457306-C-G FT63355 YY+
24381957-G-A 22235810-G-A FT63658 Y+
24398802-CC-A 22252655-CC-A +
13837890-T-A 11717184-T-A FT62960 +
4935802-A-C 5067761-A-C FT62584 +
7251704-C-G 7383663-C-G FT62777 YY+
6929210-T-A 7061169-T-A FT62748 Y+
4936817-C-A 5068776-C-A FT62585 +
7941178-C-A 8073137-C-A FT62838 YY+
4750530-G-A 4882489-G-A FT62566 +
4734403-G-A 4866362-G-A FT62564 +
8099075-A-C 8231034-A-C FT62848 YY+
8620958-G-C 8752917-G-C FT62889 YY+
8730321-C-T 8862280-C-T FT62903 YY+
4213057-A-C 4345016-A-C FT62509 +
3883099-G-T 4015058-G-T FT62471 +
8828181-A-G 8960140-A-G YY+
3774025-C-T 3905984-C-T FT62458 +
9919758-C-T 10082149-C-T FT333251 Y+
3662864-C-T 3794823-C-T FT62447 +
3587214-T-C 3719173-T-C FT62432 +
3245126-T-TA 3377085-T-TA +
17465528-G-C 15353648-G-C BY200444 YY+
4256916-G-C 4388875-G-C FT62518 +
10749011-C-A +
7149204-A-G 7281163-A-G FT62767 Y+
2815505-A-T 2947464-A-T YY*
10686997-C-G *
14102782-A-ATCTG 11982076-A-ATCTG *
10672095-A-T *
7288048-A-G 7420007-A-G **
4777999-TA-T 4909958-TA-T 9×A**
9508531-CTTTTTTT-C 9670922-CTTTTTTT-C 25×T**
13545311-AAG-A 11389635-AAG-A **
21631679-T-C 19469793-T-C **
21744105-A-G 19582219-A-G **
13457711-GTGTTGAT-G 11302035-GTGTTGAT-G **
22269743-C-A 20107857-C-A DYZ19 **
13521791-C-A 11366115-C-A **
8825306-A-G 8957265-A-G **
13457709-T-TCC 11302033-T-TCC **
23517836-C-A 21355950-C-A **
4275437-CAAAA-C 4407396-CAAAA-C 19×A**
27447466-G-GTT 25301319-G-GTT P1_Y2 **
13457738-T-C 11302062-T-C **
10604240-T-C **
3809473-T-C 3941432-T-C FGC45950 **
20937050-AT-A 18775164-AT-A P4_Dst 14×T**
17086651-C-A 14974771-C-A **
6226280-T-TC 6358239-T-TC IR3_Dst **
16427331-A-G 14315451-A-G **
15174510-C-CA 13062596-C-CA **
18056727-T-G 15944847-T-G **
5213769-A-G 5345728-A-G **
6602380-C-A 6734339-C-A **
10050801-T-A 10213192-T-A ***
11018239-A-ACTCCC ***
13306474-C-A 11150798-C-A ***
16618389-C-G 14506509-C-G ***
18662300-T-C 16550420-T-C ***
13239413-A-G 11083737-A-G ***
13257265-G-C 11101589-G-C ***
16757068-TTTG-T 14645188-TTTG-T ***
16471434-T-C 14359554-T-C ***
26140183-A-G 23994036-A-G P1_Y1 ***
28748583-A-G 26602436-A-G ***
7164414-C-T 7296373-C-T ***
13862113-A-T 11741407-A-T ***
7338823-A-G 7470782-A-G ***
13476505-T-A 11320829-T-A ***
19254460-T-C 17142580-T-C ***
14463325-T-C 12342598-T-C ***
13922260-A-G 11801554-A-G ***
15002085-C-T 12890170-C-T ***
20377031-A-G 18215145-A-G P5_Dst ***
7338827-C-T 7470786-C-T ***
16021951-T-C 13910071-T-C ***
7338825-T-A 7470784-T-A ***
21681350-G-T 19519464-G-T ***
13476450-GCTGA-G 11320774-GCTGA-G ***
2746080-G-C 2878039-G-C ***
7225803-T-C 7357762-T-C ***
6786932-A-G 6918891-A-G ***
18662301-GC-G 16550421-GC-G ***
22287892-T-C 20126006-T-C DYZ19 ***
3253842-A-AT,T 3385801-A-AT,T ***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.

Age Analysis Information (work in progress)

Kit: IN265961495544593707988282792
Used in age calculations1495544593707988282792
Counts of SNPs4132
Variant counts last updated 2020-07-03 02:52:52.

Big Tree Main Page