Tree Position

R-P312/S116 > Z40481 > ZZ11 > DF27/S250 > ZZ12 > Y30814 > Exact position not yet finalized.

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19) POS-REF-ALT (hg38) Blocks Names Region McDonald BED combBED STRBigY2
730199
13450465-A-G 11294789-A-G A*
20947347-T-G 18785461-T-G P4_Dst A*
20696832-A-C 18534946-A-C P4_Prx A*
20565888-T-C 18404002-T-C P5_Dst A*
20420550-A-G 18258664-A-G P5_Dst A*
19613882-A-G 17502002-A-G P5_Prx YA*
13450460-A-G 11294784-A-G A*
13695004-G-T 11539328-G-T A*
22289877-G-T 20127991-G-T DYZ19 A*
13718880-G-A 11563204-G-A A*
13470550-C-A 11314874-C-A A*
13692950-G-A 11537274-G-A A*
13692943-T-A 11537267-T-A A*
22310675-G-A 20148789-G-A DYZ19 A*
28793503-A-C 26647356-A-C A*
13712766-A-G 11557090-A-G A*
25992529-G-A 23846382-G-A P1_Y1 A*
22313596-G-T 20151710-G-T DYZ19 A*
13447656-C-A 11291980-C-A A*
13688864-A-T 11533188-A-T A*
28815548-A-T 26669401-A-T A*
13718865-G-A 11563189-G-A A*
10688056-A-G A*
20891641-G-T 18729755-G-T P4_Dst A*
13835589-G-A 11714883-G-A BY190440 +
18200559-T-C 16088679-T-C BY191348 YY+
14085708-T-C 11965002-T-C BY185130 YY+
19231920-A-G 17120040-A-G BY191535 YY+
14907712-A-G 12795779-A-G BY190642 YY+
14972095-A-T 12860170-A-T BY190657 YY+
17755134-T-A 15643254-T-A BY191223 YY+
16385692-G-A 14273812-G-A BY107401 YY+
21074237-C-A 18912351-C-A BY191631 YY+
13679755-A-C 11524079-A-C BY210895 +
21226580-G-A 19064694-G-A YY+
23128307-C-A 20966421-C-A BY192115 Y+
18899372-G-A 16787492-G-A BY124640 YY+
9375209-A-G 9537600-A-G BY190326 Y+
8513229-C-T 8645188-C-T BY190166 YY+
8250580-G-T 8382539-G-T BY190074 YY+
23973884-G-A 21827737-G-A BY192284 Y+
23969837-C-G 21823690-C-G BY192281 Y+
23798009-T-C 21636123-T-C BY192257 Y+
23141215-C-T 20979329-C-T BY192119 YY+
22819419-A-C 20657533-A-C BY192043 YY+
21363360-T-A 19201474-T-A BY191695 YY+
7908410-C-T 8040369-C-T BY189988 YY+
7793596-T-C 7925555-T-C BY189948 YY+
7542088-T-A 7674047-T-A BY189875 YY+
7356498-G-A 7488457-G-A BY189844 YY+
22437666-T-A 20275780-T-A BY218409 DYZ19 +
7207009-C-T 7338968-C-T BY189820 YY+
13653196-CAATGGAAAGGACTCG-C 11497520-CAATGGAAAGGACTCG-C +
21928169-A-G 19766283-A-G BY191846 YY+
21603527-C-T 19441641-C-T BY191760 YY+
17365679-G-A 15253799-G-A YY+
16242600-G-GTCTA 14130720-G-GTCTA 4×TCTA*
23843638-G-C 21681752-G-C S25893 Y*
22486916-G-C 20325030-G-C DYZ19 *
22231135-C-A 20069249-C-A DYZ19 *
25346912-G-A 23200765-G-A P2_r1 **
10988940-G-T **
10937825-C-A **
10932299-T-C **
22508221-C-T 20346335-C-T BY225449 DYZ19 **
22538376-C-T 20376490-C-T **
10922359-C-A **
10917975-G-T **
16622105-C-A 14510225-C-A **
22448864-C-T 20286978-C-T DYZ19 **
28763457-A-G 26617310-A-G **
10909541-C-T **
10876102-A-G **
10858162-C-A **
10858128-C-A **
10841737-C-A **
10835826-C-A **
10813997-CCACTCCACTG-C **
56840962-G-C **
27719030-TG-T 25572883-TG-T P1_Y2 **
11010681-C-A **
22353422-G-A 20191536-G-A DYZ19 **
14481638-G-A 12360907-G-A FT65119 **
16462658-C-A 14350778-C-A **
17376701-C-A 15264821-C-A **
17377218-G-T 15265338-G-T **
22441323-T-A 20279437-T-A BY22975 DYZ19 **
17838542-G-T 15726662-G-T **
15296715-T-C 13184814-T-C **
17886262-A-C 15774382-A-C FT65266 **
17925344-G-A 15813464-G-A **
20904275-G-T 18742389-G-T P4_Dst **
16621563-G-T 14509683-G-T **
13955818-G-T 11835112-G-T **
20975739-G-GGA 18813853-G-GGA P4_Dst **
13828267-G-A 11707561-G-A FT65054 **
11662230-G-T **
11659114-C-A **
21208956-G-T 19047070-G-T **
21394750-C-A 19232864-C-A **
22353413-C-G 20191527-C-G DYZ19 **
11036086-A-C **
10805160-CATCTT-C **
10794172-A-G **
10747910-C-A **
10988672-C-A **
6244486-C-CAA 6376445-C-CAA IR3_Dst **
10900644-C-A **
3833455-G-T 3965414-G-T **
22517295-C-A 20355409-C-A **
16008180-C-A 13896300-C-A **
6690424-AT-A 6822383-AT-A 8×T**
27546854-C-A 25400707-C-A P1_Y2 **
16931832-G-T 14819952-G-T **
10969488-C-T **
11010223-ACATTC-A **
10862691-C-A **
11036071-T-C **
4892842-A-AT 5024801-A-AT 9×T**
14216394-C-A 12095688-C-A **
14285945-C-A 12165239-C-A **
7253948-C-A 7385907-C-A **
10782651-C-T **
9900020-C-A 10062411-C-A **
13466263-C-G 11310587-C-G **
10783180-C-A **
10955227-T-G **
10757430-C-A **
9108964-G-T **
10909513-A-C **
10988815-C-T **
11005744-C-A **
10955233-T-C **
10955241-T-C **
10955258-TTCAAC-T **
3149025-G-T 3280984-G-T **
13466262-GC-G 11310586-GC-G **
7577946-G-T 7709905-G-T **
10747134-C-A **
10678809-C-CT **
13242372-G-C 11086696-G-C **
22505083-T-C 20343197-T-C DYZ19 **
13466261-T-C 11310585-T-C **
9540131-G-GCA 9702522-G-GCA IR3_Prx **
5282907-T-C 5414866-T-C **
9431956-G-T 9594347-G-T **
10988825-C-T **
3612698-T-C 3744657-T-C **
10955242-C-A **
7197329-C-A 7329288-C-A **
5194115-G-A 5326074-G-A **
3670521-G-T 3802480-G-T **
4321464-A-T 4453423-A-T **
4520297-T-C 4652256-T-C **
5045735-G-T 5177694-G-T **
4966389-G-A 5098348-G-A **
6214764-C-A 6346723-C-A IR3_Dst **
13488972-C-A,T 11333296-C-A,T ***
56845910-C-A ***
5455054-G-A 5587013-G-A BY11409BY58706 ***
18872248-CTCTTTCTT-C,CTCTT 16760368-CTCTTTCTT-C,CTCTT 12×TCTT***
16823952-TAAA-T,TA 14712072-TAAA-T,TA 17×A***
22103776-C-CAA 19941890-C-CAA 10×A***
10983160-C-A ***
10914369-G-T ***
22008578-G-A 19846692-G-A ***
22041017-G-A 19879131-G-A ***
23037237-ATTTT-A,AT 20875351-ATTTT-A,AT 20×T***
10988554-T-G ***
10940760-C-A ***
23505502-A-AAAG 21343616-A-AAAG ***
10771518-C-A ***
21092820-G-A 18930934-G-A ***
10884682-C-A ***
7562242-C-A 7694201-C-A ***
10973839-C-T ***
7709015-C-A 7840974-C-A ***
10924742-C-T ***
8151301-G-T 8283260-G-T ***
8172931-C-A 8304890-C-A ***
10877565-C-A ***
11031685-A-G ***
9831619-CT-C 9994010-CT-C ***
10652636-T-TCC ***
10652638-T-TTCCACTCC ***
10654236-CTGTCA-C,CTATCA ***
10824396-C-T ***
10818172-C-A ***
6402334-GTATT-G,GTATA 6534293-GTATT-G,GTATA ***
11650627-A-G ***
10796734-C-T ***
28621459-G-T 26475312-G-T ***
10967628-G-T ***
21457461-G-T 19295575-G-T ***
10924392-TATTCC-T,TTTTTC ***
10663621-C-A ***
10802212-A-T ***
11037820-C-A ***
8289209-C-A 8421168-C-A ***
11665717-G-T ***
15403514-G-T 13291634-G-T ***
5242528-G-A 5374487-G-A ***
15180278-A-G 13068364-A-G ***
14803200-A-G 12691271-A-G ***
14747534-AAATAATAATAATAATAATAATAATAATAAT-A 12635603-AAATAATAATAATAATAATAATAATAATAAT-A 12×AAT***
2783642-GAA-G,GAAA 2915601-GAA-G,GAAA 15×A***
11677638-A-G ***
56858722-G-T ***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.

Age Analysis Information (work in progress)

AllMcDonaldYFull
Kit: 730199950170576742727565777
Used in age calculations950170576742727565777
Counts of SNPs2627
Variant counts last updated 2019-08-07 01:01:36.



Big Tree Main Page