Tree Position

R-P312/S116 > Z290 > L21/S145 > S552 > DF13 > Z39589 > L1335/S530 > L1065 > Z16325 > S744 > S691 > S695 > A6931 > BY164314

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19) POS-REF-ALT (hg38) Blocks Names Region McDonald BED combBED STRBigY3
27967964-T-G 25821817-T-G P1_Y2 A+
16217389-A-AT 14105509-A-AT 10×TA*
10988650-T-C A*
4104374-T-G 4236333-T-G FT165932 8×G*
10801662-C-CAGTCGGGTTG **
10799692-C-T **
10799669-T-A **
7755431-G-A 7887390-G-A **
10971892-C-A **
7665420-GA-G 7797379-GA-G 8×A**
7870546-G-GAA 8002505-G-GAA 10×A**
2740552-T-A 2872511-T-A **
11033798-A-T **
8713848-C-A 8845807-C-A **
22886350-C-A 20724464-C-A **
13219735-C-A 11064059-C-A **
7852405-C-A 7984364-C-A **
4919274-A-G 5051233-A-G FTB5159 **
24416935-C-A 22270788-C-A **
10973598-A-T **
11032256-C-T **
10941534-T-C **
18636592-C-A 16524712-C-A **
26421474-CTGTGTG-C 24275327-CTGTGTG-C P1_Y1 24×TG**
24416877-C-A 22270730-C-A **
18159868-G-T 16047988-G-T **
6273117-A-G 6405076-A-G IR3_Dst **
10967553-C-G **
4862706-C-A 4994665-C-A **
22297884-G-T 20135998-G-T DYZ19 **
13543490-C-A 11387814-C-A **
11004447-T-TTTCAG **
10973621-C-A **
19677421-G-T 17565541-G-T P5_Prx **
10989524-C-A **
13999888-C-A 11879182-C-A **
11032269-C-T **
6277719-A-C 6409678-A-C IR3_Dst **
25892409-A-T 23746262-A-T P1_Y1 **
21364482-T-G 19202596-T-G **
21123935-AC-A 18962049-AC-A **
20642295-G-T 18480409-G-T P4_Prx **
18875902-A-G 16764022-A-G **
18573650-T-C 16461770-T-C **
18165877-T-C 16053997-T-C **
17245717-G-A 15133837-G-A **
14267761-G-A 12147055-G-A **
13522939-G-T 11367263-G-T **
13457776-C-CCCTGA 11302100-C-CCCTGA **
13319613-T-C 11163937-T-C **
10946672-T-C **
10618446-A-G **
6262643-C-CTT 6394602-C-CTT IR3_Dst **
16000910-C-A 13889030-C-A **
4890655-T-C 5022614-T-C **
4163408-G-T 4295367-G-T **
3607753-A-G 3739712-A-G **
3333383-T-A 3465342-T-A **
5430808-CAAAA-C 5562767-CAAAA-C 25×A**
56835794-T-A **
24430286-C-A 22284139-C-A **
23625689-G-T 21463803-G-T **
22659287-T-C 20497401-T-C **
22585438-A-T 20423552-A-T **
19554537-C-A 17442657-C-A **
19304855-G-A 17192975-G-A **
17491127-G-A 15379247-G-A **
16465879-CAGAAGAAGG-C 14353999-CAGAAGAAGG-C **
10885149-T-TAACTC **
6830372-C-A 6962331-C-A **
11004431-A-ATATTG **
10979377-G-A **
18986996-C-A 16875116-C-A **
10872278-T-C **
10796106-C-A **
22274082-C-A 20112196-C-A DYZ19 **
10979319-A-G **
10979368-C-A **
10988447-G-T **
22164576-C-A 20002690-C-A **
10799681-G-A **
11037319-C-A **
7861402-C-A 7993361-C-A **
10987770-A-G **
13474622-G-A 11318946-G-A **
11032277-T-A **
5864039-C-A 5995998-C-A **
10799673-C-T FT191022 **
10889315-T-C **
10825274-G-A **
10989115-TGAAC-T **
10799683-G-T **
10987156-ACT-A **
19663298-CGTGT-C 17551418-CGTGT-C P5_Prx 17×GT**
11004423-T-TCGTTA **
10987151-C-A **
10987153-A-ATT **
10662994-C-A **
18619201-C-A 16507321-C-A **
19097563-T-C 16985683-T-C CTS9838 PF3788 **
5433963-ATG-A 5565922-ATG-A 10×TG**
21177056-T-TTA 19015170-T-TTA 11×TA**
19831584-A-G 17719704-A-G ZS3709 Y1896 P5_Prx **
11004462-T-G **
13898759-T-G 11778053-T-G BY49459 **
3332244-T-A 3464203-T-A **
24666414-C-A 22520267-C-A P3_b2 **
13470463-G-A 11314787-G-A ***
23555039-C-A 21393153-C-A ***
24071506-A-G 21925359-A-G P3_b1 ***
56866793-G-A ***
23876012-C-T 21714126-C-T ***
24509630-G-T 22363483-G-T ***
26386284-G-T 24240137-G-T P1_Y1 ***
6059092-CAAAA-C,CAA 6191051-CAAAA-C,CAA 25×A***
5535086-T-C 5667045-T-C ***
10785582-C-A ***
4275437-C-CAA 4407396-C-CAA 19×A***
3529572-CTT-C 3661531-CTT-C 13×T***
11649172-C-A ***
16364131-C-T 14252251-C-T ***
56835923-C-CCACTT ***
13479112-C-T 11323436-C-T ***
13479101-C-T 11323425-C-T ***
10691375-T-A ***
19043480-G-GA 16931600-G-GA 10×A***
3993467-CA-C,CAA 4125426-CA-C,CAA 16×A***
14305255-C-T 12184549-C-T ***
24447104-A-G 22300957-A-G ***
23120635-A-T 20958749-A-T ***
23087390-C-G 20925504-C-G ***
18874817-A-G 16762937-A-G ***
4813344-ACT-A 4945303-ACT-A 9×CT***
17580765-ATTT-A,ATTTT 15468885-ATTT-A,ATTTT 16×T***
17283477-T-C 15171597-T-C ***
16316940-C-CA 14205060-C-CA 9×A***
17081321-A-T 14969441-A-T ***
16593551-T-C 14481671-T-C ***
16593543-A-T 14481663-A-T ***
15717977-A-C 13606097-A-C ***
15559190-A-G 13447310-A-G ***
15421470-CA-C 13309590-CA-C 10×A***
13611787-G-A 11456111-G-A ***
5683800-A-T 5815759-A-T ***
3128625-CAAA-C 3260584-CAAA-C 20×A***
26463096-TC-T 24316949-TC-T P1_Y1 ***
14604590-C-CTT 12492792-C-CTT 21×T***
21142834-CAAAAA-C 18980948-CAAAAA-C 16×A***
23430388-C-CA 21268502-C-CA 10×A***
7591204-A-G 7723163-A-G 11×T***
26386183-C-T 24240036-C-T BY226784 P1_Y1 ***
21948300-C-A 19786414-C-A ***
5219372-TG-T 5351331-TG-T ***
10691358-A-C ***
4511683-G-GA 4643642-G-GA 10×A***
13474735-A-G 11319059-A-G ***
9414420-G-C 9576811-G-C ***
13457741-C-CGGAAG 11302065-C-CGGAAG ***
22074142-C-A 19912256-C-A ***
15957380-C-A 13845500-C-A ***
21934513-C-A 19772627-C-A ***
23389531-CTT-C,CT 21227645-CTT-C,CT 18×T***
58981921-T-A 56835774-T-A ***
56832003-C-CTCTTG ***
19172799-GT-G,GTT 17060919-GT-G,GTT 17×T***
16519508-C-A 14407628-C-A ***
9019145-G-T 9181536-G-T ***
15914647-TAA-T 13802767-TAA-T 11×A***
22698894-C-A 20537008-C-A ***
13217621-CT-C 11061945-CT-C ***
15059512-C-A 12947604-C-A ***
17503958-C-A 15392078-C-A ***
2894533-C-A 3026492-C-A ***
8675054-C-A 8807013-C-A ***
17597154-CTT-C,CTTT 15485274-CTT-C,CTTT 20×T***
8758868-AAT-A 8890827-AAT-A ***
13588125-G-T 11432449-G-T ***
23438900-TC-T 21277014-TC-T ***
22645631-C-CTATA 20483745-C-CTATA ***
16950-C-T ***
16964-A-G ***
21510199-CT-C,CTT 19348313-CT-C,CTT 13×T***
16951-T-A ***
13467220-CA-C 11311544-CA-C ***
13467206-G-A 11311530-G-A ***
13532842-T-TA 11377166-T-TA 9×A***
16908451-TAAAAAA-T 14796571-TAAAAAA-T 21×A***
8597500-CTTT-C 8729459-CTTT-C 12×T***
13489769-CG-C 11334093-CG-C ***
22173954-GA-G,GAA 20012068-GA-G,GAA 16×A***
16956-GT-G ***
13476390-T-CC 11320714-T-CC ***
24423236-G-GAT 22277089-G-GAT ***
21616678-C-A 19454792-C-A ***
14800361-C-A 12688432-C-A ***
21566835-C-A 19404949-C-A ***
21547348-C-A 19385462-C-A ***
19482337-G-A 17370457-G-A ***
18913598-C-A 16801718-C-A ***
18068291-CTT-C 15956411-CTT-C 12×T***
17491666-C-A 15379786-C-A ***
10989090-T-A ***
17196825-GAA-G 15084945-GAA-G ***
21346061-ATT-A 19184175-ATT-A 12×T***
15903901-C-T 13792021-C-T ***
15868112-A-G 13756232-A-G ***
15480273-G-A 13368393-G-A ***
15288603-T-C 13176702-T-C ***
23127414-CAAAA-C 20965528-CAAAA-C 24×A***
17203766-CA-C 15091886-CA-C 9×A***
56835940-A-T ***
8107510-C-CT 8239469-C-CT BY2931 10×T***
10035532-C-A 10197923-C-A ***
8994038-C-A 9156429-C-A ***
7543967-C-A 7675926-C-A ***
13856669-A-C 11735963-A-C ***
14766406-CT-C,CTT 12654475-CT-C,CTT 13×T***
18553956-C-A 16442076-C-A ***
13470461-G-A 11314785-G-A ***
10989066-C-T ***
11656431-C-A ***
10764577-T-G ***
7646923-TAA-T 7778882-TAA-T ***
9640889-TTGTGTG-T 9803280-TTGTGTG-T IR3_Prx 22×TG***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.

Age Analysis Information (work in progress)

Kit: IN33286904571474156987349166
Kit: IN332861469716592231568225749
Used in age calculations1469716592231568225749
Counts of SNPs00
Variant counts last updated 2022-11-23 03:38:20.

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