Tree Position

R-P312/S116 > Z40481 > ZZ11 > DF27/S250 > ZZ12 > FGC78762 > ZZ19 > Z31644 > A2146 > BY1246 > BY19308

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19) POS-REF-ALT (hg38) Blocks Names Region McDonald BED combBED STRBigY2
B290711
16116202-C-T 14004322-C-T P8_Prx A*
26379888-A-G 24233741-A-G P1_Y1 A*
24334231-G-A 22188084-G-A P3_t1 A*
22224471-A-G 20062585-A-G DYZ19 A*
23179581-C-T 21017695-C-T YA*
18364631-A-G 16252751-A-G P6_Prx A*
19635817-G-A 17523937-G-A P5_Prx A*
19882470-A-G 17770590-A-G P5_Prx A*
14310033-G-C 12189327-G-C BY200403 YY+
15869153-C-T 13757273-C-T BY199385 YY+
15858792-C-T 13746912-C-T BY199384 YY+
14988156-C-T 12876222-C-T BY199353 YY+
14720905-A-G 12608973-A-G BY198294 YY+
14650876-C-T 12538941-C-T BY199347 YY+
14375998-C-T 12255294-C-T BY199330 YY+
14368172-A-C 12247468-A-C BY198002 YY+
15363-C-T +
13644648-C-G 11488972-C-G BY210542 +
16400711-A-G 14288831-A-G BY198357 YY+
9986707-C-T 10149098-C-T BY199125 Y+
9481590-A-G 9643981-A-G BY198250 +
8450915-C-T 8582874-C-T BY199249 YY+
8405944-C-T 8537903-C-T BY199245 YY+
8289672-C-G 8421631-C-G BY199010 YY+
8155539-ACCAC-A 8287498-ACCAC-A +
7374760-G-A 7506719-G-A BY199777 YY+
6784224-T-C 6916183-T-C BY200905 YY+
2892796-C-G 3024755-C-G BY198986 YY+
2827602-G-T 2959561-G-T BY200522 YY+
13211735-A-G 11056059-A-G BY209959 +
17441285-C-T 15329405-C-T BY199464 YY+
16688457-G-A 14576577-G-A BY200019 YY+
21916003-A-G 19754117-A-G BY198495 YY+
12998-C-G +
24127121-C-T 21980974-C-T BY225984 P3_b1 +
23243981-A-G 21082095-A-G BY198536 YY+
22747286-T-C 20585400-T-C BY201261 YY+
22677174-T-TA 20515288-T-TA 9×A+
22587259-C-T 20425373-C-T BY199625 YY+
22445133-G-A 20283247-G-A DYZ19 +
22438980-G-C 20277094-G-C DYZ19 +
22272757-T-A 20110871-T-A BY215455 DYZ19 +
21682493-C-A 19520607-C-A BY198933 YY+
16771984-G-A 14660104-G-A BY200023 YY+
21615450-C-G 19453564-C-G BY199102 YY+
21359079-G-A 19197193-G-A BY200202 YY+
21187067-G-A 19025181-G-A BY200191 YY+
21117088-C-T 18955202-C-T BY199571 YY+
21090131-G-C 18928245-G-C BY200464 YY+
18167031-A-T 16055151-A-T BY198687 YY+
18020994-C-T 15909114-C-T BY199492 Y+
17607208-C-T 15495328-C-T BY165188 YY+
17393723-C-T 15281843-C-T BY199459 YY+
17159171-G-T 15047291-G-T BY200645 YY+
2763047-T-C 2895006-T-C BY200882 YY+
7556001-G-A 7687960-G-A BY199783 YY+
22288335-C-A 20126449-C-A DYZ19 *
22429667-A-T 20267781-A-T DYZ19 *
7392184-G-T 7524143-G-T **
17385465-G-A 15273585-G-A **
14815343-T-C 12703414-T-C **
6090885-C-A 6222844-C-A **
15109152-T-C 12997239-T-C **
10852558-C-A **
10852545-C-A **
16004489-C-A 13892609-C-A **
16028624-T-C 13916744-T-C **
16070101-T-C 13958221-T-C **
17548578-A-G 15436698-A-G **
3641252-C-T 3773211-C-T **
16653132-A-G 14541252-A-G **
56838457-G-T **
17504073-G-A 15392193-G-A **
17043037-T-A 14931157-T-A **
21212801-C-A 19050915-C-A **
17385480-G-C 15273600-G-C **
17385492-A-AG 15273612-A-AG **
13996312-A-C 11875606-A-C **
19189620-TTG-T 17077740-TTG-T **
17561580-C-A 15449700-C-A **
17567366-C-A 15455486-C-A FGC43535 **
10949495-T-C **
17702509-G-A 15590629-G-A **
17733434-C-A 15621554-C-A **
17812099-C-A 15700219-C-A **
22199364-C-A 20037478-C-A **
14527491-C-G 12415692-C-G **
10949515-T-C **
11004409-C-CGAGTG **
10852565-T-A **
18872227-TCTTC-T 16760347-TCTTC-T 4×CTTC**
10852590-T-C **
10852598-G-C **
10852606-A-T **
10875500-C-T **
10893237-C-T **
10917268-C-T **
10942505-T-G **
10949510-T-TTTCAC **
10982192-T-C **
11004450-C-A **
14456491-G-T 12335764-G-T **
11022789-G-T **
11027582-A-C **
11029440-G-T **
10932885-C-CT **
13527079-C-A 11371403-C-A **
10932881-AC-A **
13695639-T-A 11539963-T-A **
11673567-G-A **
14295315-C-A 12174609-C-A **
11004454-C-A **
9094399-C-A 9256790-C-A **
23198042-T-A 21036156-T-A **
17913582-C-G 15801702-C-G **
18173212-TA-T 16061332-TA-T **
10949508-T-C **
23789486-T-C 21627600-T-C Z24903 **
11000612-C-A **
20522399-TAC-T 18360513-TAC-T P5_Dst **
17385479-A-G 15273599-A-G **
8002019-G-A 8133978-G-A **
15671150-C-A 13559270-C-A **
58986066-G-C 56839919-G-C **
9964292-C-A 10126683-C-A **
23321818-G-A 21159932-G-A **
23377529-A-G 21215643-A-G **
23465649-C-A 21303763-C-A **
9964269-T-A 10126660-T-A **
24576415-A-G 22430268-A-G P3_t2 **
22296993-T-G 20135107-T-G DYZ19 **
26014749-T-G 23868602-T-G P1_Y1 **
26101438-C-A 23955291-C-A P1_Y1 **
5785682-AG-A 5917641-AG-A **
27700048-C-T 25553901-C-T P1_Y2 **
27937791-C-A 25791644-C-A P1_Y2 **
28570984-C-A 26424837-C-A **
28697567-G-T 26551420-G-T **
28722983-C-A 26576836-C-A **
28736132-G-A 26589985-G-A **
56839905-TCTGCA-T **
56876089-T-C **
4615611-T-A 4747570-T-A **
22297013-G-A 20135127-G-A DYZ19 **
15406857-T-G 13294977-T-G **
10852535-A-G **
19696874-T-A 17584994-T-A P5_Prx **
18352138-AAAAAA-TTTTTT 16240258-AAAAAA-TTTTTT P6_Prx **
18565366-C-T 16453486-C-T **
18622431-C-A 16510551-C-A **
18622439-G-A 16510559-G-A **
18747144-A-G 16635264-A-G **
18747149-T-A 16635269-T-A **
18749617-A-C 16637737-A-C **
19326508-C-A 17214628-C-A **
19358114-C-G 17246234-C-G **
19411829-G-C 17299949-G-C **
19448395-C-T 17336515-C-T **
19535594-G-T 17423714-G-T **
19696901-T-A 17585021-T-A P5_Prx **
21969204-A-G 19807318-A-G **
11025157-C-T **
20648574-A-AAGGAAAGGAG 18486688-A-AAGGAAAGGAG P4_Prx **
20800599-A-T 18638713-A-T P4_Prx **
18630965-C-A 16519085-C-A **
21245349-C-A 19083463-C-A **
10808964-A-C **
21417060-C-A 19255174-C-A **
21582485-T-C 19420599-T-C **
21608032-TAAAAAAAAAAAAAAAAAAAAAAAAAAAAA-T 19446146-TAAAAAAAAAAAAAAAAAAAAAAAAAAAAA-T 46×A**
56839989-C-T **
56839986-A-G **
15997507-C-A 13885627-C-A **
10852550-T-A **
10852586-T-C **
10852534-C-T **
11034899-C-T **
7285094-C-A 7417053-C-A Y83803 **
10852593-A-C **
21353349-C-A 19191463-C-A **
13473454-C-A 11317778-C-A **
15963954-C-A 13852074-C-A **
10989688-G-T **
17567440-C-A 15455560-C-A **
10673823-C-A **
2948799-C-A 3080758-C-A **
11006638-T-C **
18747134-C-A 16635254-C-A **
56841900-C-A **
20865357-C-CAT 18703471-C-CAT P4_Dst **
22629888-C-A 20468002-C-A **
23896834-T-A 21734948-T-A **
15775992-C-A 13664112-C-A **
4863454-G-T 4995413-G-T **
10846943-A-T **
11037187-C-A **
17794214-TTC-T 15682334-TTC-T **
6512118-C-A 6644077-C-A **
19189583-G-T 17077703-G-T **
9956364-T-TAAA 10118755-T-TAAA 16×A**
2812852-A-G 2944811-A-G **
10852525-A-G **
21846451-TC-T 19684565-TC-T **
10852583-G-C **
17385492-A-G 15273612-A-G **
2868928-G-A 3000887-G-A **
10949580-T-TTAC **
10949548-C-G **
10949569-A-T **
4081880-C-A 4213839-C-A **
3272912-C-A 3404871-C-A **
18747136-C-A 16635256-C-A **
20774923-A-AG 18613037-A-AG P4_Prx **
10744228-ATTC-A **
10744233-ATT-A **
10744248-AT-A **
3641270-C-A 3773229-C-A **
15612201-C-T 13500321-C-T Y125167 **
7392527-C-A 7524486-C-A **
10949582-C-CT **
23368687-C-A 21206801-C-A **
10951471-C-A **
19189573-G-C 17077693-G-C **
10882089-C-A **
10882090-C-T **
7223469-A-AT 7355428-A-AT **
10686012-C-A **
11034934-A-C **
13248827-C-A 11093151-C-A **
19732410-CT-C 17620530-CT-C P5_Prx **
4416760-T-C 4548719-T-C **
13598528-C-A 11442852-C-A **
18747118-C-T 16635238-C-T **
2833324-T-A 2965283-T-A **
3356097-CA-C 3488056-CA-C **
14605703-C-A 12493905-C-A **
7564305-C-T 7696264-C-T **
6516796-A-G 6648755-A-G **
6770070-G-T 6902029-G-T **
8110705-C-A 8242664-C-A **
3303653-C-A 3435612-C-A **
7033296-T-C 7165255-T-C **
7078478-C-A 7210437-C-A **
7092429-A-G 7224388-A-G **
7231129-T-C 7363088-T-C **
6133201-T-A 6265160-T-A **
4615626-G-A 4747585-G-A FT57031 **
10774168-T-C **
10658625-T-A **
28542967-C-A 26396820-C-A **
56750011-C-G **
14479584-C-A 12358853-C-A **
19189570-C-T 17077690-C-T **
8525288-C-A 8657247-C-A **
8668202-T-C 8800161-T-C **
8816633-G-T 8948592-G-T **
9076054-C-A 9238445-C-A **
10932919-C-G **
9974267-G-T 10136658-G-T **
10932896-A-T **
6314986-TG-T 6446945-TG-T IR3_Dst **
6088883-T-C 6220842-T-C **
10793939-T-C **
6088288-C-A 6220247-C-A **
3351142-AT-A 3483101-AT-A **
3545680-A-T 3677639-A-T **
3640510-TCTTTCTTTCTTTCTTTCTTTCTTTCCTTCCTTCCTTCCTTC-T 3772469-TCTTTCTTTCTTTCTTTCTTTCTTTCCTTCCTTCCTTCCTTC-T **
3650019-G-T 3781978-G-T **
3650034-T-G 3781993-T-G **
3868474-A-T 4000433-A-T **
3868477-A-T 4000436-A-T **
4388096-G-A 4520055-G-A **
4457968-G-T 4589927-G-T **
4882763-G-T 5014722-G-T **
5070591-G-A 5202550-G-A **
5281373-C-A 5413332-C-A **
5397232-C-T 5529191-C-T **
10852516-A-T **
5403504-C-T 5535463-C-T **
5435398-G-T 5567357-G-T **
5578880-G-T 5710839-G-T **
5759519-C-A 5891478-C-A **
5819413-C-A 5951372-C-A **
5884836-G-T 6016795-G-T **
10846896-T-C **
10830962-C-A **
5950644-C-A 6082603-C-A **
6020828-C-A 6152787-C-A **
10686715-C-T **
10748465-C-T ***
15677505-C-CAA 13565625-C-CAA 16×A***
22022803-TATAC-T 19860917-TATAC-T ***
27029490-G-T 24883343-G-T P1_r4 ***
10654216-C-A ***
25305268-A-G 23159121-A-G P2_r1 ***
10983910-C-A ***
7896842-C-A 8028801-C-A ***
10911759-G-C ***
10808978-C-CGTACT ***
10809002-C-CTGTTT ***
13485599-C-G 11329923-C-G ***
8389569-CTTTTT-C,CT 8521528-CTTTTT-C,CT 25×T***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.

Age Analysis Information (work in progress)

AllMcDonaldYFull
Kit: B290711977951279470157831819
Used in age calculations977951279470157831819
Counts of SNPs3835
Variant counts last updated 2019-08-07 01:01:21.



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