Tree Position

R-P312/S116 > Z40481 > ZZ11 > DF27/S250 > ZZ12 > FGC78762 > ZZ19 > Z34609 > Z2571 > FGC11380 > FGC11388

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19) POS-REF-ALT (hg38) Blocks Names Region McDonald BED combBED STRBigY3
195076
BigY2
195076
20641968-G-T 18480082-G-T P4_Prx A*A*
20696936-G-T 18535050-G-T P4_Prx A*A*
56836303-C-A A*
28817825-G-A 26671678-G-A A*
59021170-G-A 56875023-G-A A*
25882123-T-C 23735976-T-C P1_Y1 A*A*
13450013-C-A 11294337-C-A A*
22289489-A-G 20127603-A-G DYZ19 A*A*
22265950-T-C 20104064-T-C DYZ19 A*
13687781-G-T 11532105-G-T A*A*
13450012-C-G 11294336-C-G A*
10008771-G-C 10171162-G-C Y++
22019741-T-C 19857855-T-C BY208412 YY++
10813344-C-T +
3767953-CT-C 3899912-CT-C +
19313228-G-A 17201348-G-A BY208036 YY++
19032338-TTTTG-T 16920458-TTTTG-T 4×TTTG++
18145329-G-A 16033449-G-A BY207733 YY++
18099117-A-G 15987237-A-G BY207719 YY++
18039166-A-C 15927286-A-C BY207694 YY++
14515315-AGAT-A 12403516-AGAT-A +
15010107-G-A 12898192-G-A BY206881 YY++
4862485-G-A 4994444-G-A +**
21783415-C-T 19621529-C-T BY208347 YY++
6797754-G-A 6929713-G-A YY++
8469553-G-A 8601512-G-A BY206168 YY++
13858389-G-C 11737683-G-C +
8874637-T-A 9006596-T-A BY206294 Y++
8499075-C-T 8631034-C-T BY206181 YY++
7842943-G-A 7974902-G-A BY205944 YY++
8361407-TA-T 8493366-TA-T ++
16960914-G-A 14849034-G-A Y13783 ZS5867 FGC30405 YY++
4591942-G-A 4723901-G-A +
4791654-G-C 4923613-G-C +
4474227-A-C 4606186-A-C +
11032059-A-G +
18096559-C-G 15984679-C-G YY**
5333887-T-C 5465846-T-C *
18096467-ATA-A,ATG 15984587-ATA-A,ATG *
13489212-G-C 11333536-G-C **
13489219-T-A 11333543-T-A **
13940592-G-A 11819886-G-A **
8036167-C-A 8168126-C-A **
13811059-G-T 11690353-G-T **
13857102-T-C 11736396-T-C **
13489209-A-C 11333533-A-C **
14281833-C-A 12161127-C-A **
14142337-A-T 12021631-A-T 13×T**
14226423-G-T 12105717-G-T **
14261737-T-TAAA 12141031-T-TAAA 11×A**
14371208-C-A 12250504-C-A **
14518500-T-TA 12406701-T-TA **
14592127-A-G 12480327-A-G **
14592130-C-T 12480330-C-T **
14925999-T-C 12814064-T-C **
15041100-C-A 12929190-C-A **
15174780-T-C 13062866-T-C **
15424494-C-T 13312614-C-T **
15427278-C-A 13315398-C-A **
15477192-T-C 13365312-T-C **
8498337-GCAAA-G 8630296-GCAAA-G **
10990252-G-T **
8827354-C-A 8959313-C-A **
10850254-A-T **
9830416-A-G 9992807-A-G **
10667522-C-A **
10767808-C-A **
10770025-C-A **
10783921-C-A **
10796672-C-CATTGTATTCGGGTTA **
10798147-C-A **
10798153-T-G **
10840442-C-T **
10843916-G-A **
9592371-A-T 9754762-A-T IR3_Prx **
9034567-A-C 9196958-A-C **
10856546-C-A **
13329530-C-T 11173854-C-T **
16039821-C-A 13927941-C-A **
10871137-C-A **
10886486-C-A **
10932019-C-T **
10933932-C-A **
10946439-C-A **
10955375-A-G **
10958768-T-G **
10969775-A-G **
10975757-ATT-A **
9592446-A-T 9754837-A-T IR3_Prx **
11012153-C-T **
15733550-A-G 13621670-A-G **
16292595-G-T 14180715-G-T **
16181377-T-C 14069497-T-C **
28780333-C-T 26634186-C-T **
21166758-C-A 19004872-C-A **
21387299-T-A 19225413-T-A **
21791781-G-T 19629895-G-T **
22039891-T-C 19878005-T-C **
22537395-T-C 20375509-T-C **
22690941-G-A 20529055-G-A ****
22935285-C-A 20773399-C-A **
23192046-G-A 21030160-G-A **
23343618-G-T 21181732-G-T **
23544857-TTTTTG-T 21382971-TTTTTG-T **
23789465-A-G 21627579-A-G **
24502343-T-G 22356196-T-G **
24511211-C-T 22365064-C-T **
56846269-T-A **
20213051-T-C 18051165-T-C P5_Dst **
2775208-C-G 2907167-C-G **
3312018-G-C 3443977-G-C **
4437592-C-A 4569551-C-A **
6024700-G-A 6156659-G-A **
6748706-T-C 6880665-T-C **
9314363-GA-G 9476754-GA-G **
16888154-A-T 14776274-A-T **
18096462-CAT-C 15984582-CAT-C **
18165485-A-G 16053605-A-G **
18344532-T-TGAGA 16232652-T-TGAGA P6_Prx **
18464539-A-ACT 16352659-A-ACT P6_Dst **
19542112-A-G 17430232-A-G **
21599078-T-C 19437192-T-C **
20536101-G-T 18374215-G-T P5_Dst **
19609359-G-A 17497479-G-A P5_Prx **
16275948-CAA-C 14164068-CAA-C **
17004568-C-A 14892688-C-A **
16292602-A-C 14180722-A-C **
16292618-C-T 14180738-C-T **
16498062-C-T 14386182-C-T **
16629315-A-G 14517435-A-G **
16989125-T-G 14877245-T-G **
16989136-ACT-A 14877256-ACT-A **
16989143-A-G 14877263-A-G **
16989144-C-T 14877264-C-T **
16989154-A-G 14877274-A-G **
16989163-A-C 14877283-A-C **
16989168-T-C 14877288-T-C **
16989171-A-T 14877291-A-T **
7409496-G-C 7541455-G-C **
17300559-A-ATG 15188679-A-ATG **
19609358-T-C 17497478-T-C P5_Prx **
17300561-T-C 15188681-T-C **
17306816-A-G 15194936-A-G **
17903500-A-G 15791620-A-G **
17952617-CT-C 15840737-CT-C **
18108580-T-G 15996700-T-G **
18544887-A-G 16433007-A-G **
18932843-A-G 16820963-A-G **
19346542-C-A 17234662-C-A **
19373767-C-A 17261887-C-A **
19449129-T-C 17337249-T-C **
19449130-G-A 17337250-G-A **
19600408-G-T 17488528-G-T P5_Prx **
19609340-A-G 17497460-A-G P5_Prx **
7475306-C-A 7607265-C-A IR1_L **
9733736-A-G 9896127-A-G IR3_Prx **
7409495-T-C 7541454-T-C **
11009014-C-A **
9034555-C-T 9196946-C-T **
11036167-C-G **
10763369-C-G **
16292585-T-G 14180705-T-G **
6791777-C-A 6923736-C-A **
21133420-C-A 18971534-C-A **
14592118-G-A 12480318-G-A **
16095140-G-T 13983260-G-T **
20330486-G-T 18168600-G-T P5_Dst **
10689854-G-T **
10977263-C-A **
9965613-G-T 10128004-G-T **
9702961-C-A 9865352-C-A IR3_Prx **
10837716-C-A **
11009021-C-CTCCAT **
7335656-A-G 7467615-A-G **
7409421-A-G 7541380-A-G **
11009036-C-CTGCAT **
10889902-T-C **
10840449-C-A **
18780291-C-A 16668411-C-A **
14967279-C-A 12855354-C-A **
4779979-C-A 4911938-C-A **
21673270-C-A 19511384-C-A **
10977868-C-A **
24432718-G-C 22286571-G-C **
10811367-C-T **
21138739-C-A 18976853-C-A **
16989130-T-C 14877250-T-C **
19609372-ATG-A 17497492-ATG-A P5_Prx **
16184057-C-A 14072177-C-A **
10811371-T-A **
16267356-C-A 14155476-C-A **
18891249-T-C 16779369-T-C **
28482797-G-A 26336650-G-A **
16292623-C-T 14180743-C-T **
10836807-C-A **
10004424-C-A 10166815-C-A **
10932025-G-A **
16933269-C-A 14821389-C-A **
24511206-T-C 22365059-T-C **
11036141-ATTCAC-T **
11036177-A-T **
14696023-CAG-C 12584089-CAG-C **
15369710-C-A 13257830-C-A **
9034570-T-G 9196961-T-G **
10979601-G-A **
10866441-C-A **
28802763-G-T 26656616-G-T **
11030731-C-T **
10955362-C-A **
10922120-T-A **
18108582-C-G 15996702-C-G **
7180124-C-T 7312083-C-T **
22996011-TC-T 20834125-TC-T **
10796653-A-G **
9034580-G-A 9196971-G-A **
15587726-A-G 13475846-A-G **
10796708-A-G **
5022035-C-A 5153994-C-A **
7784487-C-A 7916446-C-A **
5190979-C-A 5322938-C-A **
22797550-C-A 20635664-C-A **
24511212-A-G 22365065-A-G **
9034579-T-C 9196970-T-C **
19609376-A-AC 17497496-A-AC P5_Prx **
11009033-C-G **
15635836-C-A 13523956-C-A **
3218638-C-A 3350597-C-A **
10840899-C-A **
10892512-C-T **
10999698-C-A **
10693433-T-A **
13940591-T-C 11819885-T-C **
6825666-G-T 6957625-G-T **
19609350-A-T 17497470-A-T P5_Prx **
16905866-ATCTC-A 14793986-ATCTC-A **
16292607-C-T 14180727-C-T **
11007462-C-A **
11020932-C-A **
23293712-C-A 21131826-C-A **
10808847-C-A **
3876518-C-A 4008477-C-A **
15400502-C-A 13288622-C-A **
4449106-G-A 4581065-G-A **
4742245-T-C 4874204-T-C **
4952020-T-C 5083979-T-C **
6672153-AT-A 6804112-AT-A **
7012767-C-A 7144726-C-A **
7180116-C-G 7312075-C-G **
7261264-C-A 7393223-C-A **
7315282-C-A 7447241-C-A **
7335622-A-G 7467581-A-G **
7335624-A-G 7467583-A-G **
7335634-G-A 7467593-G-A **
7335646-A-G 7467605-A-G **
7335647-G-A 7467606-G-A **
7335662-A-T 7467621-A-T **
28819111-C-A 26672964-C-A **
24689891-C-A 22543744-C-A P3_b2 **
10891988-C-A **
18921555-C-A 16809675-C-A **
3950870-C-A 4082829-C-A **
16292616-G-A 14180736-G-A **
10866736-C-A **
3650789-G-T 3782748-G-T **
7017998-C-T 7149957-C-T **
7335623-C-A 7467582-C-A **
14505884-A-G 12394089-A-G **
9456141-T-C 9618532-T-C **
9310621-C-A 9473012-C-A **
10816384-C-A **
8658627-T-C 8790586-T-C ***
15669964-CAAAAAA-C 13558084-CAAAAAA-C 18×A***
8730710-C-A 8862669-C-A ***
14880241-A-ATT 12768311-A-ATT 17×T***
18007607-G-A 15895727-G-A P7_Gap ***
3865904-C-A 3997863-C-A ***
14730732-C-A 12618800-C-A ***
8980675-C-A 9143066-C-A ***
4422017-G-A 4553976-G-A ***
7157695-G-GA 7289654-G-GA ***
8846629-CTAAT-C 8978588-CTAAT-C 4×TAAT***
56685556-G-T ***
2679142-C-G 2811101-C-G ***
13450109-CTCCACCCCATCCCATCCCATTCTAT-C,CTCCATTCCATTCCATGCCATTCCAT 11294433-CTCCACCCCATCCCATCCCATTCTAT-C,CTCCATTCCATTCCATGCCATTCCAT ***
16409023-T-C 14297143-T-C ***
10047599-G-C 10209990-G-C ***
14505455-A-G 12393660-A-G ***
10071253-T-C 10233644-T-C ***
15158394-C-A 13046480-C-A ***
23019155-T-G 20857269-T-G ***
22425292-G-A 20263406-G-A DYZ19 ***
15439116-A-G 13327236-A-G ***
16710818-A-ATG 14598938-A-ATG ***
8000242-A-G 8132201-A-G ***
18253102-T-C 16141222-T-C ***
22951092-AT-A 20789206-AT-A 9×T***
17538401-G-A 15426521-G-A ***
19555496-CTT-C 17443616-CTT-C 11×T***
15904131-C-G 13792251-C-G ***
16710804-A-G 14598924-A-G ***
15236086-CT-C,CTTTT 13124172-CT-C,CTTTT 12×T***
14515315-AGAT-A,AAGAT 12403516-AGAT-A,AAGAT ***
14505465-C-A 12393670-C-A ***
14505461-C-T 12393666-C-T ***
28698236-C-A 26552089-C-A ***
15993902-C-A 13882022-C-A ***
24433323-G-T 22287176-G-T ***
16530731-TC-T 14418851-TC-T ***
19449076-T-C 17337196-T-C ***
18195154-ATTTTTT-A 16083274-ATTTTTT-A 29×T***
10889313-C-T ***
5059186-C-G 5191145-C-G ***
15904122-T-G 13792242-T-G ***
21262490-C-A 19100604-C-A ***
11036135-C-T ***
23397277-C-A 21235391-C-A ***
21281490-C-A 19119604-C-A ***
10889295-T-C ***
11021029-C-A ***
10977057-C-T ***
16401981-G-A 14290101-G-A 9×TA***
17462785-A-G 15350905-A-G ***
18392975-CCTTTCTTT-C,CCTTTCTTTCTTT 16281095-CCTTTCTTT-C,CCTTTCTTTCTTT P6_Gap 15×CTTT***
13350776-C-A 11195100-C-A ***
2841104-CTT-C,CT 2973063-CTT-C,CT 17×T***
18096561-GTA-G 15984681-GTA-G ******
21559110-T-C 19397224-T-C ***
2970375-C-A 3102334-C-A ***
24511085-C-A 22364938-C-A ***
14847004-CAAAAAA-C,CAAAAAAA 12735070-CAAAAAA-C,CAAAAAAA 20×A***
16532784-T-C 14420904-T-C ***
18266069-C-A 16154189-C-A ***
23847995-G-T 21686109-G-T ***
22023201-CTTTTT-C,CTT 19861315-CTTTTT-C,CTT 20×T***
10686727-A-C ***
23511648-G-T 21349762-G-T ***
23498169-C-A 21336283-C-A ***
4223010-A-AG 4354969-A-AG ***
2912689-AT-A 3044648-AT-A ***
16913253-A-G 14801373-A-G ***
22730300-C-A 20568414-C-A ***
10771543-C-T ***
11031275-C-A ***
22527649-C-A 20365763-C-A ***
10771530-A-G ***
10771536-C-T ***
3074679-C-A 3206638-C-A ***
22010462-CAAA-C,CAA 19848576-CAAA-C,CAA 16×A***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.

Age Analysis Information (work in progress)

AllMcDonaldYFull
Kit: 195076918290975058027433660
Kit: 1950761499640593830868321450
Used in age calculations1499640593830868321450
Counts of SNPs1414
Variant counts last updated 2019-08-26 21:23:32.



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