Tree Position

R-P312/S116 > Z290 > L21/S145 > DF13 > DF21/S192 > S971 > Z16267 > F24434 > Z3000/S951 > Z3006 > Z3004 > FGC41930 > FGC41929

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19) POS-REF-ALT (hg38) Blocks Names Region McDonald BED combBED STRBigY2
420795
22244341-A-C 20082455-A-C DYZ19 A+
20690724-C-A 18528838-C-A P4_Prx A*
13451251-C-G 11295575-C-G A*
19746883-T-TTG 17635003-T-TTG P5_Prx 13×TGA*
22312955-G-A 20151069-G-A DYZ19 A*
22783804-T-C 20621918-T-C BY208661 YY+
6800697-C-T 6932656-C-T BY205684 YY+
22464716-T-A 20302830-T-A BY221385 DYZ19 +
21610532-C-T 19448646-C-T BY208294 YY+
15610920-A-G 13499040-A-G BY207040 YY+
13852041-G-A 11731335-G-A BY206537 +
19276837-G-A 17164957-G-A BY208025 YY+
18872865-A-G 16760985-A-G BY207893 YY+
8167054-C-T 8299013-C-T **
8077156-G-T 8209115-G-T **
9117493-G-T **
9944512-G-T 10106903-G-T **
7501257-T-G 7633216-T-G IR1_L **
7452707-C-A 7584666-C-A IR1_L **
9952103-GA-G 10114494-GA-G **
7254311-A-C 7386270-A-C **
9985948-G-A 10148339-G-A **
7194-A-G **
10769427-T-G **
10748062-A-G **
10947177-C-A **
11019304-T-C **
11019291-T-A **
11019287-C-T **
11019245-A-T **
11016226-C-A **
10994614-C-A **
10945270-C-A **
10769430-C-CA **
10929969-T-C **
10818961-C-T **
10796844-T-C **
10769475-C-G **
10769454-C-T **
10769452-T-G **
7113888-T-G 7245847-T-G **
5836075-A-G 5968034-A-G **
6619424-T-G 6751383-T-G **
3397502-C-A 3529461-C-A **
14716921-G-A 12604989-G-A **
20867917-A-AC 18706031-A-AC P4_Dst **
24407098-G-T 22260951-G-T **
8678112-C-A 8810071-C-A **
5221181-T-C 5353140-T-C **
20230183-A-AC 18068297-A-AC P5_Dst **
10985204-C-CACTCA **
10028474-G-A 10190865-G-A **
15987486-C-A 13875606-C-A **
11019252-C-T **
28724197-G-T 26578050-G-T **
7043872-G-T 7175831-G-T **
3584838-G-T 3716797-G-T **
6435887-T-A 6567846-T-A **
3614853-C-A 3746812-C-A **
3628091-C-A 3760050-C-A **
4040930-C-A 4172889-C-A **
4658282-A-G 4790241-A-G **
4839869-C-G 4971828-C-G **
4864226-C-A 4996185-C-A **
4925226-C-A 5057185-C-A **
5022355-A-G 5154314-A-G **
5173296-C-A 5305255-C-A **
5770237-G-T 5902196-G-T **
13256628-T-A 11100952-T-A **
5926648-A-G 6058607-A-G **
5945461-C-A 6077420-C-A **
11037810-C-A **
13984240-G-T 11863534-G-T **
13421678-T-C 11266002-T-C **
23602418-G-T 21440532-G-T **
19075546-C-T 16963666-C-T **
19146385-C-A 17034505-C-A **
19297702-C-T 17185822-C-T **
19887303-C-CACAT 17775423-C-CACAT P5_Prx **
21245108-G-GA 19083222-G-GA **
22210410-C-A 20048524-C-A **
22594577-G-A 20432691-G-A **
22713080-T-G 20551194-T-G **
22833842-C-A 20671956-C-A **
22995346-AT-A 20833460-AT-A **
23087494-A-C 20925608-A-C **
23339162-C-A 21177276-C-A **
24310308-T-TCGCTATATGA 22164161-T-TCGCTATATGA P3_t1 **
18518253-T-C 16406373-T-C P6_Dst **
24446904-G-A 22300757-G-A **
25963900-TTG-T 23817753-TTG-T P1_Y1 **
26393943-AACAAC-A 24247796-AACAAC-A P1_Y1 **
26908672-A-G 24762525-A-G P1_r3 **
28021913-A-C 25875766-A-C P1_Y2 **
28491345-A-C 26345198-A-C **
28522205-T-C 26376058-T-C **
28529597-C-A 26383450-C-A **
28545010-C-A 26398863-C-A **
28594631-C-A 26448484-C-A **
28779811-T-G 26633664-T-G **
28793786-G-A 26647639-G-A **
56845263-G-A **
18859218-T-G 16747338-T-G **
17722957-G-T 15611077-G-T **
13570641-C-A 11414965-C-A **
14959822-T-G 12847897-T-G **
13597110-A-C 11441434-A-C **
11648860-C-T **
13908409-T-G 11787703-T-G **
18487830-G-A 16375950-G-A P6_Dst 8×A**
14074483-A-G 11953777-A-G **
14213811-G-A 12093105-G-A **
14261632-A-G 12140926-A-G **
14357942-T-G 12237237-T-G **
14474603-A-C 12353872-A-C **
12378665-G-A **
12379081-G-T **
14797937-C-A 12686008-C-A **
15060549-G-A 12948641-G-A **
17648393-C-A 15536513-C-A **
15284367-G-T 13172466-G-T **
15342538-T-C 13230657-T-C **
15541994-T-G 13430114-T-G **
15686847-G-A 13574967-G-A **
15906013-C-A 13794133-C-A **
16017555-C-A 13905675-C-A **
16021597-C-A 13909717-C-A **
16050393-C-A 13938513-C-A **
16245292-C-A 14133412-C-A **
16704796-G-A 14592916-G-A **
16813961-C-A 14702081-C-A **
17424971-C-A 15313091-C-A **
17601190-T-A 15489310-T-A **
10984326-C-T **
10829088-C-A **
8078686-A-G 8210645-A-G **
10671134-G-T **
16710195-C-A 14598315-C-A **
13855116-C-A 11734410-C-A **
13304802-C-A 11149126-C-A **
14720395-C-A 12608463-C-A **
14300764-C-A 12180058-C-A **
10747034-A-G **
15342552-T-C 13230671-T-C **
15342553-G-A 13230672-G-A BY169999FT50341 **
15342533-G-A 13230652-G-A **
15342540-A-G 13230659-A-G **
22949870-G-T 20787984-G-T **
10937377-T-G **
28076186-T-TC 25930039-T-TC P1_Y2 **
6130202-G-T 6262161-G-T **
10769444-G-T **
10842293-G-C **
13928752-C-A 11808046-C-A **
7774983-C-A 7906942-C-A **
18006646-A-T 15894766-A-T P7_Gap **
15559250-C-CA 13447370-C-CA 9×A**
10023431-C-A 10185822-C-A **
14693628-C-A 12581694-C-A **
2928350-C-A 3060309-C-A **
22081007-A-C 19919121-A-C **
9559497-TG-T 9721888-TG-T IR3_Prx **
10821764-C-A **
7258589-C-A 7390548-C-A **
10842300-C-A **
13462280-C-A 11306604-C-A **
13213951-C-G 11058275-C-G **
9438099-CTTTT-C 9600490-CTTTT-C 30×T**
11006788-C-A **
19609461-G-T 17497581-G-T P5_Prx **
13246159-A-G 11090483-A-G **
13246164-G-C 11090488-G-C **
13535727-GTA-G 11380051-GTA-G **
10803988-C-T **
10804008-C-T **
10804016-C-A **
22132610-C-A 19970724-C-A **
3032628-CT-C 3164587-CT-C 9×T**
21961720-G-GAA 19799834-G-GAA 12×A**
2729633-C-A 2861592-C-A **
13217097-C-A 11061421-C-A **
4272687-C-A 4404646-C-A **
20998361-G-T 18836475-G-T P4_Dst **
10769436-T-A **
13856328-G-GCATGC 11735622-G-GCATGC **
28798960-C-T 26652813-C-T **
13856336-T-TCAAAC 11735630-T-TCAAAC **
10763029-T-C **
10763040-C-A **
10988851-A-C **
13454501-C-A 11298825-C-A **
10753549-C-T **
10753556-T-C **
10884947-T-C **
9540126-C-CGG 9702517-C-CGG IR3_Prx 14×GT**
10984301-G-C **
10984324-C-A **
10825274-G-GCATTC **
13313605-C-A 11157929-C-A **
8061848-C-A 8193807-C-A **
15342537-A-G 13230656-A-G **
10747027-C-CTATAA **
18758950-C-CTT 16647070-C-CTT 13×T**
10770461-G-A **
10884929-G-T **
20027920-C-G 17916040-C-G P5_Prx **
10887404-ACT-A **
5480908-CTT-C 5612867-CTT-C 16×T**
13892919-G-T 11772213-G-T **
4951492-C-A 5083451-C-A **
22800767-C-A 20638881-C-A **
10884924-T-C **
10884927-C-T **
10884941-C-T **
10884946-C-G **
10884964-T-C **
8790169-A-T 8922128-A-T **
6454018-C-A 6585977-C-A **
10825667-C-A **
18255888-TAAAAAAA-T 16144008-TAAAAAAA-T 22×A**
17246877-C-A 15134997-C-A **
10747013-CA-C **
10747019-A-ACTCCT **
5313392-C-A 5445351-C-A **
21922100-AAAAG-A 19760214-AAAAG-A **
24545366-A-AC 22399219-A-AC P3_t2 **
10837205-C-A **
10842301-G-T **
10769464-G-T **
20689815-A-T 18527929-A-T P4_Prx 23×T**
19463440-C-A 17351560-C-A **
13586100-G-A 11430424-G-A **
4460239-C-A 4592198-C-A **
13522878-C-A 11367202-C-A **
10769414-C-G **
28546830-C-A 26400683-C-A **
19794915-C-A 17683035-C-A P5_Prx **
10770438-T-A **
10770458-G-C **
10770486-A-G **
10841189-C-T **
10770501-T-G **
9810871-C-A 9973262-C-A **
16886866-C-A 14774986-C-A **
13988993-A-C 11868287-A-C **
8052406-C-T 8184365-C-T **
10770439-C-A **
5859180-C-A 5991139-C-A **
10984319-G-A **
10984331-C-T **
28617625-C-A 26471478-C-A **
10900425-C-A **
14550138-C-A 12438339-C-A **
14279316-G-A 12158610-G-A **
5609384-C-A 5741343-C-A **
10884930-C-T **
10887409-ATTC-A **
10969908-C-A ***
10772410-G-C ***
10803959-T-A ***
13485439-G-A 11329763-G-A ***
13725036-G-T 11569360-G-T ***
27232111-T-TTC 25085964-T-TTC P1_g3 18×TTTC***
7162176-C-A 7294135-C-A ***
21912172-T-G 19750286-T-G ***
10868423-C-A ***
10965647-T-C ***
56833311-CATT-C ***
13862370-G-A 11741664-G-A ***
13821206-A-G 11700500-A-G ***
21912169-C-A 19750283-C-A ***
10943146-C-A ***
14301866-G-T 12181160-G-T ***
14520684-T-C 12408885-T-C ***
10746910-C-A,T ***
10772416-T-C ***
27232109-T-TTC 25085962-T-TTC P1_g3 ***
10977089-A-T ***
3279734-T-TAAATAAAC 3411693-T-TAAATAAAC ***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.

Age Analysis Information (work in progress)

AllMcDonaldYFull
Kit: 4207951005826381619418025059
Used in age calculations1005826381619418025059
Counts of SNPs66
Variant counts last updated 2019-06-17 00:07:46.



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