Allen
BigY2: 225795MDKA Birth: Ireland
Tree Position
Unique Mutations
The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.
Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.
POS-REF-ALT (hg19) | POS-REF-ALT (hg38) | Blocks | Names | Region | McDonald BED | combBED | STR | BigY2 225795 |
---|---|---|---|---|---|---|---|---|
7471674-T-G | 7603633-T-G | BY65445 | IR1_L | + | ||||
9880125-C-T | 10042516-C-T | BY81726 | Y | Y | + | |||
13471087-A-G | 11315411-A-G | ** | ||||||
9714716-CT-C | 9877107-CT-C | IR3_Prx | 13×T | ** | ||||
13471093-C-T | 11315417-C-T | ** | ||||||
22193807-CA-C | 20031921-CA-C | ** | ||||||
22580067-TC-T | 20418181-TC-T | ** | ||||||
4918488-C-A | 5050447-C-A | FGC39234 | ** | |||||
28795815-G-A | 26649668-G-A | BY151516 | ** | |||||
19431378-C-A | 17319498-C-A | ** | ||||||
4926104-G-T | 5058063-G-T | ** | ||||||
28496383-G-A | 26350236-G-A | ** | ||||||
19438619-A-G | 17326739-A-G | ** | ||||||
17886485-C-A | 15774605-C-A | ** | ||||||
14562369-A-G | 12450569-A-G | ** | ||||||
14328247-T-G | 12207541-T-G | ** | ||||||
14008778-G-GA | 11888072-G-GA | 25×A | ** | |||||
7938814-C-A | 8070773-C-A | ** | ||||||
13487726-C-T | 11332050-C-T | ** | ||||||
13487747-C-CA | 11332071-C-CA | ** | ||||||
3545997-C-A | 3677956-C-A | ** | ||||||
19508177-C-T | 17396297-C-T | 19×T | ** | |||||
13491155-G-A | 11335479-G-A | ** | ||||||
10995851-C-A | ** | |||||||
11037194-A-T | ** | |||||||
6312786-T-TC | 6444745-T-TC | IR3_Dst | ** | |||||
7050160-C-A | 7182119-C-A | ** | ||||||
17032537-A-T | 14920657-A-T | ** | ||||||
6277751-C-A | 6409710-C-A | IR3_Dst | ** | |||||
10755354-C-A | ** | |||||||
10755375-T-A | ** | |||||||
10807209-T-G | ** | |||||||
10987303-T-A | ** | |||||||
18389278-C-A | 16277398-C-A | P6_Gap | ** | |||||
7039954-C-A | 7171913-C-A | ** | ||||||
14460001-A-C | 12339274-A-C | ** | ||||||
13199256-C-A | 11043580-C-A | ** | ||||||
16275470-C-A | 14163590-C-A | ** | ||||||
6916042-C-A | 7048001-C-A | ** | ||||||
9508016-T-A | 9670407-T-A | ** | ||||||
19739348-A-ACAT | 17627468-A-ACAT | P5_Prx | ** | |||||
14519474-C-A | 12407675-C-A | ** | ||||||
4560978-C-A | 4692937-C-A | ** | ||||||
13884187-C-A | 11763481-C-A | ** | ||||||
10807215-T-C | FT432087 | ** | ||||||
28613187-C-A | 26467040-C-A | ** | ||||||
18136259-C-A | 16024379-C-A | ** | ||||||
19799791-C-A | 17687911-C-A | P5_Prx | ** | |||||
23341866-G-T | 21179980-G-T | ** | ||||||
4568293-G-T | 4700252-G-T | ** | ||||||
56835936-T-TTCCTC | ** | |||||||
14227624-T-C | 12106918-T-C | ** | ||||||
14589968-G-T | 12478168-G-T | ** | ||||||
4900248-C-A | 5032207-C-A | ** | ||||||
2746076-A-G | 2878035-A-G | ** | ||||||
18650507-C-A | 16538627-C-A | ** | ||||||
7650230-C-A | 7782189-C-A | ** | ||||||
10882060-C-G | ** | |||||||
20865479-G-A | 18703593-G-A | P4_Dst | ** | |||||
23952408-C-A | 21806261-C-A | ** | ||||||
3405487-C-A | 3537446-C-A | ** | ||||||
16703461-G-T | 14591581-G-T | ** | ||||||
10995863-C-A | ** | |||||||
9657405-A-AG | 9819796-A-AG | IR3_Prx | ** | |||||
21095771-C-A | 18933885-C-A | ** | ||||||
7436047-C-T | 7568006-C-T | ** | ||||||
4460707-C-A | 4592666-C-A | ** | ||||||
13267762-C-A | 11112086-C-A | ** | ||||||
7535935-T-C | 7667894-T-C | ** | ||||||
25201082-G-T | 23054935-G-T | g1 | ** | |||||
23529028-C-A | 21367142-C-A | ** | ||||||
15450199-T-A | 13338319-T-A | ** | ||||||
10776474-T-C | ** | |||||||
18928570-CAAAA-C | 16816690-CAAAA-C | 28×A | ** | |||||
15769091-C-A | 13657211-C-A | ** | ||||||
4302272-C-A | 4434231-C-A | ** | ||||||
28545743-C-A | 26399596-C-A | ** | ||||||
10746595-A-C | ** | |||||||
19438615-A-G | 17326735-A-G | ** | ||||||
15730484-C-A | 13618604-C-A | ** | ||||||
13291326-C-A | 11135650-C-A | ** | ||||||
10990826-T-G | ** | |||||||
10990836-T-G | ** | |||||||
10990845-T-G | ** | |||||||
10990851-T-A | ** | |||||||
10990872-C-T | FT375031 | ** | ||||||
10990873-G-A | FT439440 | ** | ||||||
10990878-C-A | FT220664 | ** | ||||||
2806235-AG-A | 2938194-AG-A | ** | ||||||
19247024-C-A | 17135144-C-A | ** | ||||||
5126451-C-T | 5258410-C-T | ** | ||||||
16489857-C-A | 14377977-C-A | ** | ||||||
21713465-T-C | 19551579-T-C | ** | ||||||
20340169-C-A | 18178283-C-A | P5_Dst | ** | |||||
23142459-T-C | 20980573-T-C | ** | ||||||
9714747-A-T | 9877138-A-T | IR3_Prx | ** | |||||
7418403-C-A | 7550362-C-A | ** | ||||||
14425699-C-A | 12304974-C-A | ** | ||||||
28609597-C-A | 26463450-C-A | ** | ||||||
14468267-C-A | 12347536-C-A | ** | ||||||
16117483-T-TC | 14005603-T-TC | P8_Prx | ** | |||||
16700187-C-A | 14588307-C-A | ** | ||||||
3252544-C-A | 3384503-C-A | ** | ||||||
10898227-C-A | ** | |||||||
7436049-T-C | 7568008-T-C | ** | ||||||
14106876-C-A | 11986170-C-A | ** | ||||||
28536914-C-A | 26390767-C-A | ** | ||||||
28529684-C-A | 26383537-C-A | FT270926 | ** | |||||
8075288-C-A | 8207247-C-A | ** | ||||||
17211355-C-A | 15099475-C-A | ** | ||||||
10838004-G-T | ** | |||||||
19059982-T-C | 16948102-T-C | ** | ||||||
17301266-AG-A | 15189386-AG-A | ** | ||||||
15542073-C-A | 13430193-C-A | ** | ||||||
28536899-C-A | 26390752-C-A | ** | ||||||
16432908-C-A | 14321028-C-A | ** | ||||||
2740438-C-A | 2872397-C-A | ** | ||||||
10757626-C-A | ** | |||||||
3593229-C-A | 3725188-C-A | ** | ||||||
14229818-C-A | 12109112-C-A | ** | ||||||
3249523-C-A | 3381482-C-A | ** | ||||||
10752488-C-A | ** | |||||||
14324894-C-CTT | 12204188-C-CTT | 26×T | ** | |||||
10977213-C-A | ** | |||||||
17224409-C-A | 15112529-C-A | ** | ||||||
19524523-C-A | 17412643-C-A | FT202231 | ** | |||||
24931831-A-G | 22785684-A-G | g1 | ** | |||||
7019079-C-A | 7151038-C-A | ** | ||||||
15442428-A-G | 13330548-A-G | ** | ||||||
5126457-C-T | 5258416-C-T | 11×T | ** | |||||
3625597-C-A | 3757556-C-A | ** | ||||||
7535936-G-A | 7667895-G-A | ** | ||||||
14561408-C-A | 12449609-C-A | ** | ||||||
18022420-A-G | 15910540-A-G | ** | ||||||
11019494-C-A | ** | |||||||
18158597-T-C | 16046717-T-C | ** | ||||||
15532365-C-A | 13420485-C-A | ** | ||||||
13471091-C-T | 11315415-C-T | FT444031 | ** | |||||
20107984-AAT-A | 17996104-AAT-A | P5_Dst | ** | |||||
18244602-CTATA-C | 16132722-CTATA-C | ** | ||||||
14933544-C-G | 12821609-C-G | ** | ||||||
14283604-G-T | 12162898-G-T | ** | ||||||
16429620-C-T | 14317740-C-T | ** | ||||||
2909234-CAAAAAA-C | 3041193-CAAAAAA-C | 16×A | ** | |||||
56833141-G-T | ** | |||||||
14296416-C-A | 12175710-C-A | ** | ||||||
19524610-C-A | 17412730-C-A | ** | ||||||
9048126-C-A | 9210517-C-A | ** | ||||||
10987523-C-A | ** | |||||||
7535911-C-T | 7667870-C-T | ** | ||||||
28795756-T-G | 26649609-T-G | ** | ||||||
28795782-A-G | 26649635-A-G | ** | ||||||
28795795-A-T | 26649648-A-T | FT461998 | ** | |||||
28795796-G-A | 26649649-G-A | FT461999 | ** | |||||
28795806-A-G | 26649659-A-G | ** | ||||||
13512828-C-A | 11357152-C-A | ** | ||||||
21604071-T-C | 19442185-T-C | ** | ||||||
13325449-C-A | 11169773-C-A | ** | ||||||
22008363-C-A | 19846477-C-A | ** | ||||||
9089008-C-A | 9251399-C-A | ** | ||||||
10837995-A-C | ** | |||||||
19399853-C-A | 17287973-C-A | ** | ||||||
21891017-C-A | 19729131-C-A | ** | ||||||
3603228-C-T | 3735187-C-T | ** | ||||||
17504093-C-A | 15392213-C-A | ** | ||||||
2981308-T-C | 3113267-T-C | ** | ||||||
7436050-G-A | 7568009-G-A | ** | ||||||
7471008-C-A | 7602967-C-A | IR1_L | ** | |||||
28499473-C-A | 26353326-C-A | ** | ||||||
10033273-C-A | 10195664-C-A | ** | ||||||
21963749-T-C | 19801863-T-C | ** | ||||||
17347537-C-A | 15235657-C-A | ** | ||||||
23465736-G-T | 21303850-G-T | ** | ||||||
10663339-C-A | ** | |||||||
24422548-C-A | 22276401-C-A | ** | ||||||
13919873-T-C | 11799167-T-C | ** | ||||||
14550622-C-A | 12438823-C-A | ** | ||||||
2746064-C-T | 2878023-C-T | ** | ||||||
2825307-T-C | 2957266-T-C | ** | ||||||
2860209-G-C | 2992168-G-C | ** | ||||||
2960272-C-G | 3092231-C-G | ** | ||||||
2960396-A-C | 3092355-A-C | ** | ||||||
2979176-T-G | 3111135-T-G | ** | ||||||
3122569-T-C | 3254528-T-C | ** | ||||||
3131689-GT-G | 3263648-GT-G | ** | ||||||
3215067-AT-A | 3347026-AT-A | ** | ||||||
3345625-T-C | 3477584-T-C | ** | ||||||
3375236-A-T | 3507195-A-T | ** | ||||||
3603366-T-A | 3735325-T-A | ** | ||||||
3622438-C-A | 3754397-C-A | ** | ||||||
3625769-C-A | 3757728-C-A | ** | ||||||
3641307-G-T | 3773266-G-T | ** | ||||||
3653364-T-A | 3785323-T-A | ** | ||||||
3680450-A-G | 3812409-A-G | ** | ||||||
3696345-A-T | 3828304-A-T | ** | ||||||
3728626-T-A | 3860585-T-A | ** | ||||||
3732071-G-C | 3864030-G-C | ** | ||||||
3732133-A-G | 3864092-A-G | ** | ||||||
3732150-A-G | 3864109-A-G | ** | ||||||
3837026-A-G | 3968985-A-G | ** | ||||||
3839666-T-A | 3971625-T-A | ** | ||||||
3899624-A-G | 4031583-A-G | ** | ||||||
3951420-A-G | 4083379-A-G | ** | ||||||
4017357-C-A | 4149316-C-A | ** | ||||||
4223425-T-C | 4355384-T-C | ** | ||||||
4223547-A-C | 4355506-A-C | ** | ||||||
4326627-C-A | 4458586-C-A | ** | ||||||
4444447-A-G | 4576406-A-G | ** | ||||||
4538435-A-G | 4670394-A-G | ** | ||||||
4631015-T-C | 4762974-T-C | ** | ||||||
4776719-C-A | 4908678-C-A | ** | ||||||
4805328-T-C | 4937287-T-C | ** | ||||||
4956952-A-T | 5088911-A-T | ** | ||||||
5107910-T-C | 5239869-T-C | ** | ||||||
5187706-A-G | 5319665-A-G | ** | ||||||
5195783-TTTGG-T | 5327742-TTTGG-T | ** | ||||||
5367668-T-C | 5499627-T-C | ** | ||||||
5446513-A-T | 5578472-A-T | ** | ||||||
5459239-C-A | 5591198-C-A | ** | ||||||
5528002-G-T | 5659961-G-T | ** | ||||||
5542890-A-T | 5674849-A-T | ** | ||||||
5612466-A-G | 5744425-A-G | ** | ||||||
5626025-C-A | 5757984-C-A | FTA25735 | ** | |||||
5799761-C-A | 5931720-C-A | ** | ||||||
5926994-A-G | 6058953-A-G | ** | ||||||
5991401-C-A | 6123360-C-A | ** | ||||||
6277629-G-T | 6409588-G-T | IR3_Dst | ** | |||||
6321387-CA-C | 6453346-CA-C | IR3_Dst | ** | |||||
6367776-C-CCACCCCA | 6499735-C-CCACCCCA | ** | ||||||
6367785-A-C | 6499744-A-C | ** | ||||||
6509387-T-A | 6641346-T-A | ** | ||||||
6510259-C-T | 6642218-C-T | ** | ||||||
6521098-T-G | 6653057-T-G | ** | ||||||
6633082-T-C | 6765041-T-C | ** | ||||||
6671199-G-T | 6803158-G-T | ** | ||||||
6725591-T-C | 6857550-T-C | ** | ||||||
6725594-C-G | 6857553-C-G | ** | ||||||
6765658-T-TC | 6897617-T-TC | ** | ||||||
6765665-G-C | 6897624-G-C | ** | ||||||
6790120-C-T | 6922079-C-T | ** | ||||||
6808203-C-A | 6940162-C-A | ** | ||||||
6809421-G-A | 6941380-G-A | ** | ||||||
6847880-A-T | 6979839-A-T | ** | ||||||
6910441-T-TTG | 7042400-T-TTG | ** | ||||||
6934574-A-ATT | 7066533-A-ATT | ** | ||||||
6954984-A-T | 7086943-A-T | ** | ||||||
7011591-T-A | 7143550-T-A | ** | ||||||
7021772-A-G | 7153731-A-G | ** | ||||||
7039291-C-A | 7171250-C-A | ** | ||||||
7093615-C-A | 7225574-C-A | ** | ||||||
7137372-C-A | 7269331-C-A | ** | ||||||
7148208-C-A | 7280167-C-A | ** | ||||||
7167082-A-G | 7299041-A-G | ** | ||||||
7228870-C-T | 7360829-C-T | ** | ||||||
7239524-A-G | 7371483-A-G | ** | ||||||
7304288-C-A | 7436247-C-A | ** | ||||||
7411455-T-A | 7543414-T-A | ** | ||||||
7487057-G-A | 7619016-G-A | IR1_L | ** | |||||
7535913-G-C | 7667872-G-C | ** | ||||||
7535939-A-G | 7667898-A-G | ** | ||||||
7824800-A-T | 7956759-A-T | ** | ||||||
7829098-A-T | 7961057-A-T | ** | ||||||
8036008-T-C | 8167967-T-C | ** | ||||||
8052394-C-T | 8184353-C-T | ** | ||||||
8090708-G-A | 8222667-G-A | ** | ||||||
8111607-G-A | 8243566-G-A | ** | ||||||
8713714-T-A | 8845673-T-A | ** | ||||||
9110723-T-A | ** | |||||||
9110783-T-G | ** | |||||||
9330792-G-A | 9493183-G-A | ** | ||||||
9498709-C-A | 9661100-C-A | ** | ||||||
9657355-A-G | 9819746-A-G | IR3_Prx | ** | |||||
9990008-C-A | 10152399-C-A | ** | ||||||
10016102-C-A | 10178493-C-A | ** | ||||||
10659192-TTCCA-T | ** | |||||||
10659675-A-G | ** | |||||||
10685526-C-T | ** | |||||||
10753989-C-G | ** | |||||||
10754035-A-G | ** | |||||||
10754077-C-T | ** | |||||||
10757632-C-T | ** | |||||||
10767944-T-C | ** | |||||||
10795830-C-A | ** | |||||||
10808506-G-C | ** | |||||||
10825993-C-T | ** | |||||||
10838009-A-T | ** | |||||||
10879212-G-T | ** | |||||||
10939593-A-G | ** | |||||||
10960365-T-A | ** | |||||||
10991457-C-A | ** | |||||||
10996947-G-T | ** | |||||||
11007493-C-G | ** | |||||||
11008016-T-G | ** | |||||||
11017611-C-T | ** | |||||||
11031058-C-A | ** | |||||||
13201965-C-A | 11046289-C-A | ** | ||||||
13208012-G-A | 11052336-G-A | ** | ||||||
13249578-C-A | 11093902-C-A | ** | ||||||
13253325-GC-G | 11097649-GC-G | ** | ||||||
13254002-G-GTTT | 11098326-G-GTTT | 17×T | ** | |||||
13411131-A-G | 11255455-A-G | ** | ||||||
13464200-C-A | 11308524-C-A | ** | ||||||
13471104-G-T | 11315428-G-T | ** | ||||||
13498455-T-C | 11342779-T-C | ** | ||||||
13612126-T-G | 11456450-T-G | ** | ||||||
11668069-G-A | ** | |||||||
11671170-T-A | ** | |||||||
11677441-G-A | ** | |||||||
13803390-A-T | 11682684-A-T | ** | ||||||
13804495-A-G | 11683789-A-G | ** | ||||||
13893735-C-A | 11773029-C-A | ** | ||||||
13899131-A-G | 11778425-A-G | ** | ||||||
13909223-T-A | 11788517-T-A | ** | ||||||
14032566-T-G | 11911860-T-G | ** | ||||||
14074038-C-T | 11953332-C-T | ** | ||||||
14090707-C-A | 11970001-C-A | ** | ||||||
14193149-TG-T | 12072443-TG-T | ** | ||||||
14198232-A-G | 12077526-A-G | FT251597 | ** | |||||
14213210-T-A | 12092504-T-A | ** | ||||||
14295573-C-T | 12174867-C-T | ** | ||||||
14315707-T-G | 12195001-T-G | ** | ||||||
14392888-C-T | 12272184-C-T | ** | ||||||
14409024-C-CT | 12288321-C-CT | ** | ||||||
14499584-G-A | 12387789-G-A | ** | ||||||
14505391-G-C | 12393596-G-C | ** | ||||||
14507817-C-A | 12396022-C-A | ** | ||||||
14579452-T-G | 12467652-T-G | ** | ||||||
14608173-T-A | 12496375-T-A | ** | ||||||
14689041-C-T | 12577107-C-T | ** | ||||||
14765076-C-A | 12653145-C-A | ** | ||||||
14765106-A-AC | 12653175-A-AC | 8×T | ** | |||||
14803088-A-G | 12691159-A-G | ** | ||||||
14947564-C-T | 12835638-C-T | ** | ||||||
14985205-T-C | 12873273-T-C | ** | ||||||
15113841-A-G | 13001928-A-G | ** | ||||||
15150904-G-C | 13038991-G-C | ** | ||||||
15209233-T-C | 13097319-T-C | ** | ||||||
15242577-C-A | 13130663-C-A | ** | ||||||
15334870-T-C | 13222988-T-C | ** | ||||||
15381271-C-A | 13269391-C-A | ** | ||||||
15450211-CG-C | 13338331-CG-C | ** | ||||||
15450219-T-TC | 13338339-T-TC | ** | ||||||
15450370-TG-T | 13338490-TG-T | ** | ||||||
15498792-C-A | 13386912-C-A | ** | ||||||
15536429-T-C | 13424549-T-C | ** | ||||||
15556762-G-T | 13444882-G-T | ** | ||||||
15566761-G-A | 13454881-G-A | ** | ||||||
15626529-T-C | 13514649-T-C | ** | ||||||
15648941-A-G | 13537061-A-G | ** | ||||||
15745627-A-G | 13633747-A-G | ** | ||||||
15746402-A-T | 13634522-A-T | ** | ||||||
15790520-G-GA | 13678640-G-GA | ** | ||||||
15999657-C-T | 13887777-C-T | ** | ||||||
16062203-T-A | 13950323-T-A | ** | ||||||
16079350-C-A | 13967470-C-A | ** | ||||||
16214475-G-T | 14102595-G-T | ** | ||||||
16246044-A-T | 14134164-A-T | ** | ||||||
16266084-C-T | 14154204-C-T | ** | ||||||
16344622-C-A | 14232742-C-A | ** | ||||||
16421197-C-G | 14309317-C-G | ** | ||||||
16427948-A-G | 14316068-A-G | ** | ||||||
16428003-A-T | 14316123-A-T | ** | ||||||
16648147-G-C | 14536267-G-C | ** | ||||||
16705668-T-A | 14593788-T-A | ** | ||||||
16842528-C-A | 14730648-C-A | ** | ||||||
16886723-C-A | 14774843-C-A | ** | ||||||
17006240-A-C | 14894360-A-C | ** | ||||||
17310879-T-C | 15198999-T-C | ** | ||||||
17323680-AGGGAG-A | 15211800-AGGGAG-A | ** | ||||||
17343812-T-G | 15231932-T-G | ** | ||||||
17490198-C-T | 15378318-C-T | ** | ||||||
17572025-G-C | 15460145-G-C | ** | ||||||
17580845-G-T | 15468965-G-T | ** | ||||||
17601074-T-C | 15489194-T-C | ** | ||||||
17718335-C-A | 15606455-C-A | ** | ||||||
17865382-C-A | 15753502-C-A | ** | ||||||
17973325-G-A | 15861445-G-A | ** | ||||||
18130567-G-A | 16018687-G-A | ** | ||||||
18143823-A-G | 16031943-A-G | ** | ||||||
18185166-A-T | 16073286-A-T | ** | ||||||
18188926-C-A | 16077046-C-A | ** | ||||||
18253490-A-G | 16141610-A-G | ** | ||||||
18408910-A-G | 16297030-A-G | P6_Gap | ** | |||||
18569706-G-A | 16457826-G-A | ** | ||||||
18626054-C-A | 16514174-C-A | ** | ||||||
18659771-G-A | 16547891-G-A | ** | ||||||
18672499-G-T | 16560619-G-T | ** | ||||||
18672596-T-C | 16560716-T-C | ** | ||||||
18682849-GT-G | 16570969-GT-G | ** | ||||||
18739567-A-T | 16627687-A-T | ** | ||||||
18742159-T-C | 16630279-T-C | ** | ||||||
18742172-T-C | 16630292-T-C | ** | ||||||
18742175-C-G | 16630295-C-G | ** | ||||||
18742177-T-C | 16630297-T-C | ** | ||||||
18742182-A-G | 16630302-A-G | ** | ||||||
18742187-A-C | 16630307-A-C | ** | ||||||
18820679-G-A | 16708799-G-A | ** | ||||||
18926770-G-A | 16814890-G-A | ** | ||||||
18926777-G-T | 16814897-G-T | ** | ||||||
18937482-A-G | 16825602-A-G | ** | ||||||
18950702-T-C | 16838822-T-C | ** | ||||||
18963861-A-G | 16851981-A-G | ** | ||||||
19081205-G-A | 16969325-G-A | ** | ||||||
19081211-T-G | 16969331-T-G | ** | ||||||
19081225-G-T | 16969345-G-T | ** | ||||||
19125344-C-A | 17013464-C-A | ** | ||||||
19297317-CA-C | 17185437-CA-C | ** | ||||||
19412774-G-C | 17300894-G-C | ** | ||||||
19425211-A-G | 17313331-A-G | ** | ||||||
19433275-A-G | 17321395-A-G | ** | ||||||
19508173-G-A | 17396293-G-A | ** | ||||||
19531296-T-C | 17419416-T-C | ** | ||||||
19744939-T-C | 17633059-T-C | P5_Prx | ** | |||||
20199908-A-G | 18038022-A-G | P5_Dst | ** | |||||
20557730-G-T | 18395844-G-T | P5_Dst | ** | |||||
20707575-TG-T | 18545689-TG-T | P4_Prx | ** | |||||
20840737-TG-T | 18678851-TG-T | P4_Gap | ** | |||||
21104515-T-C | 18942629-T-C | ** | ||||||
21149371-C-A | 18987485-C-A | ** | ||||||
21153246-G-A | 18991360-G-A | ** | ||||||
21220928-A-T | 19059042-A-T | ** | ||||||
21382084-T-C | 19220198-T-C | ** | ||||||
21408398-C-A | 19246512-C-A | ** | ||||||
21410107-A-G | 19248221-A-G | ** | ||||||
21422159-AC-A | 19260273-AC-A | ** | ||||||
21457841-A-T | 19295955-A-T | ** | ||||||
21505690-A-T | 19343804-A-T | ** | ||||||
21543195-C-A | 19381309-C-A | FTA5425 | ** | |||||
21950041-C-T | 19788155-C-T | ** | ||||||
21954453-C-T | 19792567-C-T | ** | ||||||
21959277-C-A | 19797391-C-A | ** | ||||||
21969361-A-G | 19807475-A-G | ** | ||||||
22079564-C-A | 19917678-C-A | BY137480 | ** | |||||
22092692-G-A | 19930806-G-A | ** | ||||||
22113513-G-T | 19951627-G-T | ** | ||||||
22146732-A-G | 19984846-A-G | ** | ||||||
22564633-C-T | 20402747-C-T | ** | ||||||
22659529-C-A | 20497643-C-A | ** | ||||||
22841620-G-T | 20679734-G-T | ** | ||||||
22868765-CT-C | 20706879-CT-C | ** | ||||||
23019555-A-G | 20857669-A-G | ** | ||||||
23038075-T-C | 20876189-T-C | ** | ||||||
23076288-C-T | 20914402-C-T | ** | ||||||
23127754-T-A | 20965868-T-A | ** | ||||||
23144041-T-C | 20982155-T-C | ** | ||||||
23184465-A-C | 21022579-A-C | ** | ||||||
23186147-T-A | 21024261-T-A | ** | ||||||
23291211-G-A | 21129325-G-A | ** | ||||||
23332240-T-A | 21170354-T-A | ** | ||||||
23332241-G-C | 21170355-G-C | ** | ||||||
23339684-A-G | 21177798-A-G | ** | ||||||
23434150-T-G | 21272264-T-G | ** | ||||||
23440304-T-C | 21278418-T-C | ** | ||||||
23768577-T-C | 21606691-T-C | ** | ||||||
23897900-T-A | 21736014-T-A | ** | ||||||
24378571-AT-A | 22232424-AT-A | ** | ||||||
26928090-A-G | 24781943-A-G | P1_r3 | ** | |||||
28544509-G-T | 26398362-G-T | ** | ||||||
28601044-T-C | 26454897-T-C | ** | ||||||
28622105-C-A | 26475958-C-A | ** | ||||||
28724862-G-C | 26578715-G-C | ** | ||||||
28740075-G-T | 26593928-G-T | ** | ||||||
28742013-C-A | 26595866-C-A | ** | ||||||
28755810-T-G | 26609663-T-G | ** | ||||||
28760147-T-G | 26614000-T-G | ** | ||||||
28795769-T-C | 26649622-T-C | BY41335 | ** | |||||
28795809-T-C | 26649662-T-C | ** | ||||||
28795834-A-T | 26649687-A-T | ** | ||||||
28795837-A-T | 26649690-A-T | ** | ||||||
8422302-CTG-C | 8554261-CTG-C | *** | ||||||
14933849-T-C | 12821914-T-C | *** | ||||||
9029736-CTTTT-C | 9192127-CTTTT-C | 16×T | *** | |||||
10624986-A-T | FGC36475 | *** | ||||||
21087399-CAAA-C | 18925513-CAAA-C | 14×A | *** | |||||
13478239-G-T | 11322563-G-T | *** | ||||||
56861769-G-T | *** | |||||||
7028924-C-A | 7160883-C-A | *** | ||||||
21466330-C-A | 19304444-C-A | *** | ||||||
19054342-CTTTTT-C,CT | 16942462-CTTTTT-C,CT | 16×T | *** | |||||
24869956-C-A | 22723809-C-A | IR1_R | *** | |||||
13478266-G-C | 11322590-G-C | *** | ||||||
11656647-C-A | *** | |||||||
16057413-C-A | 13945533-C-A | *** | ||||||
10828726-C-A | *** | |||||||
14103214-C-A | 11982508-C-A | *** | ||||||
14933854-A-G | 12821919-A-G | *** | ||||||
13308165-C-A | 11152489-C-A | *** | ||||||
17895175-ATTTT-A,ATT | 15783295-ATTTT-A,ATT | 21×T | *** | |||||
3790845-T-A | 3922804-T-A | *** | ||||||
6205609-T-C | 6337568-T-C | IR3_Dst | *** | |||||
6633164-C-A | 6765123-C-A | *** | ||||||
6915796-ATTTT-A,ATTTTTT | 7047755-ATTTT-A,ATTTTTT | 22×T | *** | |||||
7214400-C-A | 7346359-C-A | *** | ||||||
7999284-AT-A | 8131243-AT-A | *** | ||||||
9025619-C-A | 9188010-C-A | *** | ||||||
10671141-C-A | *** | |||||||
13309458-C-A | 11153782-C-A | *** | ||||||
13471067-C-G | 11315391-C-G | *** | ||||||
13471082-C-T | 11315406-C-T | *** | ||||||
13585885-C-A | 11430209-C-A | BY156182 | *** | |||||
11656584-G-A | *** | |||||||
14300299-C-T | 12179593-C-T | *** | ||||||
14370928-G-A | 12250224-G-A | *** | ||||||
14430708-A-G | 12309981-A-G | *** | ||||||
14485153-C-A | 12364422-C-A | *** | ||||||
14933853-G-A | 12821918-G-A | FT126766 | *** | |||||
15325123-CTT-C,CTTTT | 13213241-CTT-C,CTTTT | 11×T | *** | |||||
15402249-A-T | 13290369-A-T | *** | ||||||
15862943-C-A | 13751063-C-A | *** | ||||||
16275574-C-T | 14163694-C-T | *** | ||||||
16590913-A-G | 14479033-A-G | *** | ||||||
16859294-C-A | 14747414-C-A | *** | ||||||
17503490-C-T | 15391610-C-T | *** | ||||||
18176601-T-C | 16064721-T-C | *** | ||||||
19410246-T-C | 17298366-T-C | *** | ||||||
21677670-A-G | 19515784-A-G | *** | ||||||
22167185-C-A | 20005299-C-A | *** | ||||||
22300811-A-T | 20138925-A-T | DYZ19 | *** | |||||
22881086-T-TG | 20719200-T-TG | *** | ||||||
23061981-C-A | 20900095-C-A | *** | ||||||
23697344-T-A | 21535458-T-A | *** | ||||||
23808850-C-A | 21646964-C-A | *** | ||||||
28581660-TATATATATAC-T,TATAC | 26435513-TATATATATAC-T,TATAC | *** | ||||||
28627165-A-G | 26481018-A-G | *** | ||||||
28768563-T-C | 26622416-T-C | *** | ||||||
56827646-T-C | *** | |||||||
24479-G-T | *** |
In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.
For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.
The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.
The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.