Tree Position

R-P312/S116 > Z40481 > ZZ11 > DF27/S250 > ZZ12 > FGC78762 > ZZ19 > Z31644 > Z42772 > BY2285 > BY25634 > BY66187

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19) POS-REF-ALT (hg38) Blocks Names Region McDonald BED combBED STRBigY2
871763
25970228-A-G 23824081-A-G P1_Y1 A*
19904866-A-G 17792986-A-G P5_Prx A*
25936792-C-T 23790645-C-T P1_Y1 A*
6238466-G-A 6370425-G-A IR3_Dst A*
15810964-T-G 13699084-T-G FGC35903L159 S169 YY+
14362775-A-C 12242070-A-C BY198001 YY+
21412918-GT-G 19251032-GT-G 9×T+
21343435-CTG-C 19181549-CTG-C +
21218327-G-A 19056441-G-A YY+
18522886-G-T 16411006-G-T BY200678 P6_Dst +
17177938-C-T 15066058-C-T BY199456 YY+
16455408-CA-C 14343528-CA-C +
15660706-C-T 13548826-C-T BY199376 YY+
15210308-GA-G 13098394-GA-G +
18731100-C-T 16619220-C-T BY199521 YY+
14399010-T-C 12278306-T-C BY95434 YY+
13802953-A-T 11682247-A-T BY211415 +
14091526-C-T 11970820-C-T BY199313 YY+
22188303-C-A 20026417-C-A BY198946 YY+
5853121-C-T 5985080-C-T BY199155 +
6828114-T-C 6960073-T-C BY200907 Y+
7212678-G-A 7344637-G-A BY199768 YY+
7654237-G-A 7786196-G-A BY199788 YY+
7837179-C-T 7969138-C-T BY11021 YY+
8275186-G-A 8407145-G-A BY199819 YY+
8291304-C-T 8423263-C-T BY199239 YY+
8791268-T-C 8923227-T-C BY200983 YY+
9013475-G-C 9175866-G-C BY200386 Y+
9403800-CAAG-C 9566191-CAAG-C +
22063536-C-T 19901650-C-T BY199610 YY+
15660644-C-T 13548764-C-T BY103170 YY+
23593503-C-A 21431617-C-A BY198964 YY+
22468839-A-T 20306953-A-T BY222124 DYZ19 +
22698990-C-T 20537104-C-T BY199631 YY+
23798868-A-C 21636982-A-C BY198098 Y+
22473128-C-T 20311242-C-T BY222854 DYZ19 +
22657263-C-T 20495377-C-T BY199629 YY+
22438876-G-T 20276990-G-T BY218600 DYZ19 +
22302322-A-G 20140436-A-G DYZ19 *
10899970-C-T **
10879336-T-C **
10857596-C-T **
10880192-C-A **
10857585-A-T **
24407339-C-A 22261192-C-A **
10857577-A-T **
24404956-A-T 22258809-A-T **
10899063-T-A **
22253191-G-C 20091305-G-C DYZ19 **
24404955-C-G 22258808-C-G **
10933512-T-G **
10944994-G-T **
10944995-G-C **
10944996-T-C **
10969744-T-A **
10969756-T-A **
10994713-C-A **
10998413-T-G **
11009475-C-T **
24408946-C-A 22262799-C-A **
10826875-A-ACCCCG **
10857576-A-T **
28694024-G-T 26547877-G-T **
10690821-G-A **
10755912-C-A **
10759961-A-G **
10767110-C-A **
10767283-G-T **
56847792-T-G **
10769398-T-C **
56828020-A-T **
10769400-C-A **
10773201-CCATTA-C **
10834437-A-G **
10811292-CTCACT-C **
28569946-C-A 26423799-C-A **
28558026-C-A 26411879-C-A **
10813035-A-C **
10815980-C-G **
26593173-A-T 24447026-A-T P1_g2 **
10825264-CCGTTTCATTG-C **
25601504-A-C 23455357-A-C P1_gr1 **
13279844-C-A 11124168-C-A **
11011606-T-G **
24404954-A-T 22258807-A-T **
13292573-C-A 11136897-C-A **
19022454-G-A 16910574-G-A FT24612 **
17500545-C-A 15388665-C-A **
17794188-TTC-T 15682308-TTC-T **
18511543-A-G 16399663-A-G P6_Dst **
18703158-G-A 16591278-G-A **
18779192-C-A 16667312-C-A **
18793708-C-T 16681828-C-T **
18855700-C-A 16743820-C-A **
18876241-A-T 16764361-A-T **
19245379-T-G 17133499-T-G **
17315297-C-A 15203417-C-A **
19436817-G-A 17324937-G-A **
19476627-T-A 17364747-T-A **
20022440-AAG-A 17910560-AAG-A P5_Prx **
20438756-T-G 18276870-T-G P5_Dst **
21515712-AA-T 19353826-AA-T **
21515742-A-T 19353856-A-T **
21515758-G-A 19353872-G-A **
21515763-T-C 19353877-T-C **
22253229-A-T 20091343-A-T DYZ19 **
17453378-G-A 15341498-G-A **
17213328-C-A 15101448-C-A **
13405142-GTTT-G 11249466-GTTT-G 12×T**
14527653-C-A 12415854-C-A **
11660008-A-G **
11666554-A-T **
22176064-G-C 20014178-G-C **
13930097-G-A 11809391-G-A **
13930109-G-T 11809403-G-T **
14069063-C-T 11948357-C-T **
23832857-GA-G 21670971-GA-G **
23465686-G-T 21303800-G-T **
14717660-C-G 12605728-C-G **
16598984-CAAAAAAAAAAA-C 14487104-CAAAAAAAAAAA-C 25×A**
14926313-A-AT 12814378-A-AT **
14926323-C-G 12814388-C-G **
14926356-G-T 12814421-G-T **
15127012-T-C 13015099-T-C **
23126512-A-G 20964626-A-G **
10664996-T-G **
23062575-C-A 20900689-C-A **
16039035-C-T 13927155-C-T **
22788674-T-C 20626788-T-C **
10671754-C-A **
9832493-G-T 9994884-G-T **
10661095-A-T **
10949342-C-A **
16240991-C-A 14129111-C-A **
10939453-G-T **
10773176-C-T **
10773188-G-A **
24456024-C-A 22309877-C-A **
13603120-AT-A 11447444-AT-A 9×T**
5904647-C-A 6036606-C-A **
23825753-C-CAA 21663867-C-CAA 21×A**
10973950-CTCCATT-C **
14379160-C-A 12258456-C-A **
10686487-C-A **
10819016-C-A **
18707813-C-A 16595933-C-A **
11030314-C-A **
17568240-C-A 15456360-C-A **
10899054-C-T **
6132557-G-A 6264516-G-A **
5613658-C-A 5745617-C-A **
10899986-C-G **
10899084-C-T **
56860417-C-A **
14295522-T-G 12174816-T-G **
22662175-C-CT 20500289-C-CT 8×T**
9890178-AT-A 10052569-AT-A **
10857587-T-C **
7088089-C-A 7220048-C-A **
10773172-C-A **
10922155-C-CTCTA **
13961443-C-A 11840737-C-A **
4133913-C-A 4265872-C-A **
10896333-C-CCTTCA **
10933754-A-C **
10860281-C-A **
15730497-C-A 13618617-C-A **
10950496-C-A **
10759987-T-G **
13567846-C-A 11412170-C-A **
14531152-C-A 12419353-C-A FGC58578 **
9015523-G-A 9177914-G-A **
10792629-AT-A **
17143891-ATTTTTT-A 15032011-ATTTTTT-A 35×T**
10773138-A-T **
3229193-T-A 3361152-T-A **
13588182-G-GCA 11432506-G-GCA 14×CA**
22130150-C-A 19968264-C-A **
10773226-C-A **
13297175-C-A 11141499-C-A **
6040264-C-A 6172223-C-A **
13726404-G-A 11570728-G-A **
10759963-T-A **
18454964-TC-T 16343084-TC-T P6_Dst **
10857552-T-G **
3535972-C-A 3667931-C-A **
10773132-C-A **
10798005-C-A **
10903325-C-A **
10922157-T-TG **
7264046-A-C 7396005-A-C **
6757133-C-A 6889092-C-A **
4959438-A-T 5091397-A-T **
5335398-A-G 5467357-A-G **
5557357-T-C 5689316-T-C **
5708884-G-A 5840843-G-A FT17919 **
5905604-C-A 6037563-C-A **
6069538-C-A 6201497-C-A **
6267717-A-T 6399676-A-T IR3_Dst **
6403338-C-A 6535297-C-A **
6534585-C-A 6666544-C-A **
6642867-C-A 6774826-C-A **
7043295-G-T 7175254-G-T **
7313419-T-C 7445378-T-C **
4769547-C-T 4901506-C-T **
7664512-C-A 7796471-C-A **
8153957-C-A 8285916-C-A **
8237069-T-C 8369028-T-C **
8671764-C-A 8803723-C-A **
8741651-T-A 8873610-T-A **
9380395-C-A 9542786-C-A **
9542060-G-GTC 9704451-G-GTC IR3_Prx **
9832441-T-C 9994832-T-C **
9832464-C-G 9994855-C-G **
9832486-C-T 9994877-C-T **
9832472-C-T 9994863-C-T Z7698 **
9832515-A-T 9994906-A-T **
4799593-C-A 4931552-C-A **
4841408-A-G 4973367-A-G **
4388455-G-A 4520414-G-A **
3130994-T-C 3262953-T-C **
13218643-T-G 11062967-T-G **
19330358-G-T 17218478-G-T **
18130659-C-G 16018779-C-G **
18130660-T-C 16018780-T-C **
10941291-G-T **
10857556-T-C **
8988225-G-T 9150616-G-T **
14926325-T-C 12814390-T-C **
13324896-C-A 11169220-C-A **
10944983-T-C **
4235705-A-T 4367664-A-T **
22542484-A-C 20380598-A-C **
11018197-C-A **
3251909-C-T 3383868-C-T **
4074078-G-T 4206037-G-T **
3804480-C-A 3936439-C-A **
3800120-C-A 3932079-C-A **
3656688-G-T 3788647-G-T **
3603396-C-A 3735355-C-A **
35638-G-T **
3117287-G-T 3249246-G-T **
10985259-TATTCC-T **
7543934-C-A 7675893-C-A ***
15947951-CTT-C,CT 13836071-CTT-C,CT 19×T***
56835381-C-A ***
23009508-G-A 20847622-G-A ***
14549309-CAAAAAA-C,CAAAA 12437510-CAAAAAA-C,CAAAA 16×A***
10943566-C-A ***
8822530-C-G 8954489-C-G ***
22300810-G-A 20138924-G-A DYZ19 ***
23005382-C-A 20843496-C-A ***
14073623-C-A 11952917-C-A ***
7436186-G-T 7568145-G-T ***
18926872-CAA-C,CAAA 16814992-CAA-C,CAAA 17×A***
18612759-GTATATATATATATATA-G 16500879-GTATATATATATATATA-G 15×TA***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.

Age Analysis Information (work in progress)

AllMcDonaldYFull
Kit: 8717631009830282129628077624
Used in age calculations1009830282129628077624
Counts of SNPs2122
Variant counts last updated 2019-07-03 01:09:46.



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