Tree Position

R-U106/S21 > Z2265 > Z381/S263 > Z301/S499 > L48 > ZZ63 > Y10968 > ZZ64 > Exact position not yet finalized.

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19) POS-REF-ALT (hg38) Blocks Names Region McDonald BED combBED STRBigY2
N106397
22243814-A-T 20081928-A-T DYZ19 A+
6255048-C-G 6387007-C-G IR3_Dst A*
26045663-C-T 23899516-C-T P1_Y1 A*
26046988-G-A 23900841-G-A P1_Y1 A*
6290161-G-T 6422120-G-T IR3_Dst A*
22231653-C-A 20069767-C-A DYZ19 A*
21261134-C-A 19099248-C-A BY177245 YY+
18206867-G-T 16094987-G-T BY177084 YY+
18548274-G-T 16436394-G-T BY177103 Y+
21229867-T-C 19067981-T-C BY177239 YY+
8368472-T-G 8500431-T-G BY176564 YY+
21305470-A-C 19143584-A-C BY177254 YY+
24883303-C-A 22737156-C-A BY226267 g1 +
23245792-C-T 21083906-C-T BY177421 YY+
21315445-A-G 19153559-A-G BY177258 YY+
23035576-A-G 20873690-A-G BY177407 YY+
22931343-G-C 20769457-G-C BY177396 YY+
17913509-C-G 15801629-C-G BY177061 YY+
8894933-G-C 9026892-G-C BY176644 Y+
17650291-C-A 15538411-C-A BY177026 YY+
16212293-G-T 14100413-G-T BY176892 YY+
14388171-C-T 12267467-C-T BY176753 YY+
13844583-T-C 11723877-T-C BY176705 +
13827704-C-A 11706998-C-A BY176701 +
8641324-A-G 8773283-A-G BZ2428 YY+
6374049-G-A 6506008-G-A BY176401 +
6791977-A-G 6923936-A-G BY176414 YY+
14492474-G-A 12380671-G-A Z42714 YY+
7305975-A-G 7437934-A-G BY176451 YY+
22443077-G-A 20281191-G-A FGC82874 DYZ19 +
22509124-G-A 20347238-G-A BY225526 DYZ19 *
22294654-G-C 20132768-G-C DYZ19 *
28786671-GTGGAA-G 26640524-GTGGAA-G 5×TGGAA*
22294655-G-T 20132769-G-T DYZ19 *
3719391-AAGT-A 3851350-AAGT-A *
22537123-C-T 20375237-C-T **
11023141-C-T **
10894506-T-A **
10894519-T-A **
10977052-C-G **
10977094-A-C **
10980471-C-A **
10993795-C-T **
10998164-A-C **
11003745-C-CAT **
11011040-C-A FT45578 **
11023056-C-A FT165020 **
11023080-GCCATT-G **
11023116-C-A **
11033034-T-A **
10869530-T-A **
13240746-C-A 11085070-C-A **
13249504-C-A 11093828-C-A **
13488204-G-C 11332528-G-C **
13567060-G-A 11411384-G-A **
13627316-C-A 11471640-C-A **
13719630-A-G 11563954-A-G **
11672511-TAAAAA-T **
11672518-G-GAATCC **
11672522-G-A **
13811070-A-AAACG 11690364-A-AAACG **
13811094-G-GAATCTACTTTT 11690388-G-GAATCTACTTTT **
28761315-G-A 26615168-G-A **
28589431-T-A 26443284-T-A **
10884571-C-A **
10858327-C-A **
13860062-C-G 11739356-C-G **
10677385-G-A **
56850931-C-T **
9804987-C-T 9967378-C-T **
9887226-C-A 10049617-C-A **
10625668-A-T **
56842272-T-A **
10648081-C-CTG **
10648087-C-A **
10648116-C-T **
10655933-C-A **
10663339-C-A **
10669263-T-A **
56828302-T-C **
10669292-T-C **
28791385-A-G 26645238-A-G **
10846098-C-T **
28761332-G-A 26615185-G-A **
28761327-G-T 26615180-G-T **
10744306-C-G **
10774994-C-A **
10785583-G-T **
10792232-A-C **
10792239-T-C **
10792243-A-T **
10792274-C-G **
10792294-CCCCAT-C **
10803923-C-T **
10844872-C-T **
10844875-C-G **
13855848-T-A 11735142-T-A **
13874726-C-A 11754020-C-A **
22528366-C-A 20366480-C-A **
23332249-A-T 21170363-A-T **
18577200-C-A 16465320-C-A **
18650646-G-A 16538766-G-A **
18856987-A-T 16745107-A-T **
18857014-C-A 16745134-C-A **
18901103-A-G 16789223-A-G **
19125528-T-C 17013648-T-C **
19125535-A-G 17013655-A-G **
19673359-G-C 17561479-G-C P5_Prx **
20533502-A-AC 18371616-A-AC P5_Dst **
20793521-T-TAA 18631635-T-TAA P4_Prx 8×AC**
20850719-T-A 18688833-T-A P4_Dst **
21084485-C-T 18922599-C-T **
23332250-T-C 21170364-T-C **
23332233-G-C 21170347-G-C **
18564317-T-A 16452437-T-A **
23059680-C-A 20897794-C-A **
21367456-T-C 19205570-T-C **
21464255-G-A 19302369-G-A FT97094 **
21836276-A-T 19674390-A-T **
21846705-CT-C 19684819-CT-C **
21919403-T-A 19757517-T-A **
22134077-A-G 19972191-A-G **
23047374-C-A 20885488-C-A **
22965912-C-T 20804026-C-T FT97218 **
22836698-G-A 20674812-G-A **
22766635-C-A 20604749-C-A **
22487798-T-A 20325912-T-A DYZ19 **
22602311-A-G 20440425-A-G **
18565345-G-A 16453465-G-A **
23332297-T-A 21170411-T-A **
13941693-A-ATTT 11820987-A-ATTT 15×T**
15792825-C-A 13680945-C-A **
14284276-AACTGGCAGATTCAGCTGTT-A 12163570-AACTGGCAGATTCAGCTGTT-A **
14385448-C-A 12264744-C-A **
28570332-C-A 26424185-C-A **
14566518-A-G 12454718-A-G FT96495 **
14993902-A-G 12881987-A-G **
15218721-A-G 13106807-A-G **
15449863-C-A 13337983-C-A **
15541689-G-A 13429809-G-A **
15542249-A-G 13430369-A-G **
15696960-G-T 13585080-G-T **
15712235-A-G 13600355-A-G **
15735322-C-A 13623442-C-A **
15746234-C-A 13634354-C-A **
16045260-A-G 13933380-A-G **
18452857-A-AG 16340977-A-AG P6_Dst **
27916876-A-AGTCT 25770729-A-AGTCT P1_Y2 **
26010282-A-AT 23864135-A-AT P1_Y1 **
16484109-C-A 14372229-C-A **
16636503-C-A 14524623-C-A **
16729201-T-A 14617321-T-A **
17296910-A-G 15185030-A-G **
25970693-C-A 23824546-C-A P1_Y1 **
17702388-C-A 15590508-C-A **
24302811-G-T 22156664-G-T P3_t1 **
18121805-C-A 16009925-C-A **
18154470-C-A 16042590-C-A **
18159902-C-A 16048022-C-A **
23332304-G-A 21170418-G-A **
16266144-G-A 14154264-G-A **
9512370-C-A 9674761-C-A **
19355-G-C **
15252853-G-T 13140939-G-T **
30974-C-A **
9601587-T-TC 9763978-T-TC IR3_Prx **
11016910-C-G **
10778683-C-A **
5214427-T-C 5346386-T-C **
14149355-C-A 12028649-C-A **
6310857-A-ACG 6442816-A-ACG IR3_Dst **
23332261-A-C 21170375-A-C **
4129850-C-A 4261809-C-A **
3332462-C-A 3464421-C-A **
10889777-T-G **
10801439-C-A **
6784647-C-A 6916606-C-A **
16033824-C-A 13921944-C-A **
10838408-C-A **
23332278-T-C 21170392-T-C **
13910012-C-A 11789306-C-A FT29570 **
17440674-C-A 15328794-C-A FT50766 **
2812858-G-A 2944817-G-A **
10023727-C-A 10186118-C-A **
8153761-C-T 8285720-C-T **
6916136-C-A 7048095-C-A **
17478949-C-A 15367069-C-A **
7100720-C-A 7232679-C-A **
11016903-T-G **
23332282-T-C 21170396-T-C **
27861938-C-A 25715791-C-A P1_Y2 **
19600477-G-T 17488597-G-T P5_Prx **
28635167-C-A 26489020-C-A **
10851829-A-G **
10792282-T-C **
11023059-C-T **
13811094-G-T 11690388-G-T **
6911252-T-G 7043211-T-G **
3131136-C-A 3263095-C-A **
10889275-T-TCCGCTCTAC **
28497094-C-A 26350947-C-A **
20622559-G-T 18460673-G-T P4_Prx **
14432273-C-A 12311546-C-A **
10744267-C-A **
10744257-C-G **
14658290-G-A 12546355-G-A **
8854379-C-A 8986338-C-A **
10648077-CAT-C **
28716291-C-A 26570144-C-A **
6179553-G-T 6311512-G-T IR3_Dst **
14425611-C-A 12304886-C-A **
20622570-C-A 18460684-C-A P4_Prx **
23364100-A-G 21202214-A-G Z8021 **
19318211-A-T 17206331-A-T **
14357659-C-A 12236954-C-A **
9839478-A-G 10001869-A-G FT295766 **
14516888-C-A 12405089-C-A **
11001436-A-G **
5214424-C-A 5346383-C-A **
10987740-A-G **
10921538-T-G **
16218014-A-G 14106134-A-G **
20252991-AT-A 18091105-AT-A P5_Dst **
15011705-C-A 12899793-C-A **
56841516-G-T **
20021498-AT-A 17909618-AT-A P5_Prx **
10648096-C-G **
10977041-C-A **
10772468-T-A **
7127355-C-A 7259314-C-A **
18511536-G-T 16399656-G-T P6_Dst **
11023124-T-C **
10889274-A-ACAC **
16429642-G-T 14317762-G-T **
5073901-C-A 5205860-C-A **
7160815-C-A 7292774-C-A **
56858996-G-T **
10685027-C-A **
3501157-T-G 3633116-T-G **
4494647-C-G 4626606-C-G **
4494646-G-T 4626605-G-T **
4494639-C-T 4626598-C-T **
4044802-G-A 4176761-G-A **
3860401-A-T 3992360-A-T **
3831522-A-G 3963481-A-G **
3467029-T-C 3598988-T-C **
4494665-C-T 4626624-C-T **
2881471-C-T 3013430-C-T **
2784377-T-C 2916336-T-C **
2708453-A-G 2840412-A-G **
10801206-C-A **
10692832-C-A **
28794189-A-C 26648042-A-C **
14377528-C-A 12256824-C-A **
4494653-C-T 4626612-C-T **
4586156-G-A 4718115-G-A **
28591269-G-GTTT 26445122-G-GTTT 11×T**
7058500-A-G 7190459-A-G **
7645493-C-A 7777452-C-A **
7621970-C-T 7753929-C-T **
7469575-A-G 7601534-A-G IR1_L **
7294589-C-A 7426548-C-A **
7140720-C-T 7272679-C-T **
7095099-G-C 7227058-G-C **
7095097-C-A 7227056-C-A **
6464952-T-C 6596911-T-C **
4800718-G-T 4932677-G-T **
5920175-T-A 6052134-T-A **
5847837-G-A 5979796-G-A **
5746092-C-T 5878051-C-T **
5619617-C-A 5751576-C-A **
5446422-A-T 5578381-A-T **
5243703-G-A 5375662-G-A **
5188696-T-C 5320655-T-C **
10844880-C-T **
11016917-T-A **
24278330-G-GGAA 22132183-G-GGAA P3_b1 9×GGAA**
16842784-C-A 14730904-C-A **
16654736-C-A 14542856-C-A **
11023114-C-T **
5214431-T-C 5346390-T-C **
22662144-C-A 20500258-C-A **
10792304-A-C **
17313457-C-A 15201577-C-A **
28461976-G-A 26315829-G-A **
5214420-A-G 5346379-A-G **
13463573-C-A 11307897-C-A **
16929608-C-A 14817728-C-A **
14474669-C-A 12353938-C-A **
2745871-AAAAAG-A 2877830-AAAAAG-A **
28761337-C-T 26615190-C-T FT315261 **
7182019-C-A 7313978-C-A **
28581595-C-A 26435448-C-A **
10770365-C-A **
6747887-C-A 6879846-C-A **
4494659-T-A 4626618-T-A **
11674917-G-T **
10754948-A-AC **
15365942-A-G 13254062-A-G ***
17175264-C-T 15063384-C-T ***
21039096-C-CA 18877210-C-CA 10×A***
6778838-C-A 6910797-C-A ***
7018027-ATTTT-A,AT 7149986-ATTTT-A,AT 24×T***
14007942-CA-C,CAA 11887236-CA-C,CAA 15×A***
28589658-C-A 26443511-C-A ***
16354478-GA-G 14242598-GA-G ***
15931493-T-C 13819613-T-C ***
10807259-T-C,G ***
23572484-C-CGT 21410598-C-CGT 13×GT***
22747717-CTT-C,CT 20585831-CTT-C,CT 14×T***
22300739-A-T 20138853-A-T DYZ19 ***
21558921-C-T 19397035-C-T FT32742 ***
21555238-CTTTT-C,CTT 19393352-CTTTT-C,CTT 15×T***
22263274-A-T 20101388-A-T DYZ19 ***
22263275-G-A 20101389-G-A DYZ19 ***
13798973-G-T 11678267-G-T ***
2795520-C-A 2927479-C-A ***
21299134-C-A 19137248-C-A ***
23845914-G-T 21684028-G-T ***
10652222-C-A ***
4325834-C-A 4457793-C-A ***
14172643-G-A 12051937-G-A ***
7418073-CAAAAAAA-C 7550032-CAAAAAAA-C 22×A***
18931201-G-GA 16819321-G-GA 8×A***
14951631-C-A 12839705-C-A ***
5535044-C-T 5667003-C-T ***
8822668-C-A 8954627-C-A ***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.

Age Analysis Information (work in progress)

AllMcDonaldYFull
Kit: N106397973012279835137903906
Used in age calculations973012279835137903906
Counts of SNPs1818
Variant counts last updated 2020-06-09 02:58:37.



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