Tree Position

R-P312/S116 > Z290 > L21/S145 > DF13 > ZZ10 > Z253 > Z2534 > ZZ5 > Z2185 > BY44331

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19) POS-REF-ALT (hg38) Blocks Names Region McDonald BED combBED STRBigY2
146374
20458673-C-T 18296787-C-T P5_Dst A+
22420137-T-C 20258251-T-C BY49289 DYZ19 A+
26252842-A-G 24106695-A-G P1_Y1 A*
19673167-C-T 17561287-C-T P5_Prx A*
19620235-C-G 17508355-C-G P5_Prx YA*
22304771-C-A 20142885-C-A DYZ19 A*
28817153-G-A 26671006-G-A A*
25599967-G-A 23453820-G-A P1_gr1 A*
25849771-A-C 23703624-A-C P1_Y1 A*
25929349-T-C 23783202-T-C P1_Y1 A*
26109595-A-G 23963448-A-G P1_Y1 A*
26163256-G-A 24017109-G-A P1_Y1 A*
28529-A-G A*
13449868-A-G 11294192-A-G A*
19721102-G-A 17609222-G-A P5_Prx A*
15933802-T-C 13821922-T-C BY190858 YY+
2888252-C-T 3020211-C-T YY+
2912044-A-G 3044003-A-G BY189652 YY+
6913311-C-T 7045270-C-T BY189767 YY+
19548871-G-A 17436991-G-A BY191614 YY+
19221282-A-G 17109402-A-G BY191532 YY+
19114722-G-A 17002842-G-A BY191498 YY+
17094750-G-C 14982870-G-C BY191075 YY+
6342079-T-C 6474038-T-C BY189696 +
16742040-T-A 14630160-T-A BY191000 YY+
16420360-G-A 14308480-G-A BY190939 YY+
16326516-C-G 14214636-C-G BY190919 YY+
9744984-C-T 9907375-C-T BY190369 +
15473748-G-T 13361868-G-T BY190754 YY+
9967846-C-T 10130237-C-T BY209436 Y+
6791805-C-T 6923764-C-T BY189734 YY+
7429455-C-A 7561414-C-A BY189858 YY+
14992155-A-G 12880240-A-G BY190662 YY+
7919345-G-A 8051304-G-A BY189996 YY+
21490550-A-G 19328664-A-G BY191744 YY+
8636234-G-A 8768193-G-A BY190210 YY+
14354142-A-C 12233437-A-C BY190558 YY+
9591659-C-T 9754050-C-T BY190359 IR3_Prx +
14168651-A-C 12047945-A-C BY190504 YY+
13717392-A-T 11561716-A-T BY211339 +
13194860-C-A 11039184-C-A BY209869 +
15269008-A-C 13157097-A-C BY190718 YY+
13864291-T-C 11743585-T-C BY190454 4×AATGG+
2824769-G-C 2956728-G-C BY189632 YY+
14345712-G-A 12225007-G-A FGC944Y66528 YY+
3544836-G-A 3676795-G-A BY32372 +
22804663-G-A 20642777-G-A BY192034 YY+
22977543-C-A 20815657-C-A PF4934 YY+
23541482-G-A 21379596-G-A BY192213 YY+
23388914-C-T 21227028-C-T BY192181 YY+
22473070-C-T 20311184-C-T BY222846 DYZ19 +
22510197-A-T 20348311-A-T BY225627 DYZ19 +
13717275-AGAATG-A 11561599-AGAATG-A 8×GAATG+
21755548-T-C 19593662-T-C BY191800 YY+
22238779-C-T 20076893-C-T BY191914 DYZ19 +
22253926-C-G 20092040-C-G DYZ19 *
28806663-C-G 26660516-C-G BY151845 *
28811576-G-A 26665429-G-A *
8125062-GAGAGA-G 8257021-GAGAGA-G 12×AGAGA*
22317221-G-A 20155335-G-A ZS11631 DYZ19 *
22280028-T-A 20118142-T-A DYZ19 *
9928429-G-T 10090820-G-T **
28544818-G-A 26398671-G-A **
10629673-A-T **
10629678-A-G **
9755091-G-T 9917482-G-T **
10654539-T-C **
9755073-T-A 9917464-T-A **
10654571-T-C **
9755068-T-A 9917459-T-A **
10664597-T-C **
10664614-C-CCAATT **
10664628-T-G **
10629686-C-T **
10803990-TTGATCCACTC-T **
10685546-C-T **
10873229-T-A **
10914186-T-G **
10900720-C-G **
10900702-T-C **
10895873-T-TC **
10895870-C-CCTTT **
10895858-T-TCAAC **
10895857-A-AC **
10878751-C-A **
10862026-G-T **
10749542-C-A **
10846923-C-A **
10825054-C-A **
10815130-A-G **
10815123-C-CCATTA **
10815115-A-C **
10806287-T-C **
10803971-C-G **
10794387-T-A **
9755046-T-A 9917437-T-A **
7304466-T-C 7436425-T-C **
28747703-T-A 26601556-T-A **
4779584-CTTT-C 4911543-CTTT-C 12×T**
6147542-G-A 6279501-G-A IR3_Dst **
6074507-C-T 6206466-C-T **
5785838-A-C 5917797-A-C **
56705900-G-C **
5716726-G-A 5848685-G-A **
5678631-G-T 5810590-G-T **
4700835-A-G 4832794-A-G **
6247986-A-AGCCCGCG 6379945-A-AGCCCGCG IR3_Dst **
4579704-G-T 4711663-G-T **
3950805-C-A 4082764-C-A **
3818155-C-A 3950114-C-A **
3649083-C-A 3781042-C-A **
3085781-C-A 3217740-C-A **
2901456-C-A 3033415-C-A **
56871495-C-A **
6247947-C-A 6379906-C-A IR3_Dst **
6310700-T-G 6442659-T-G IR3_Dst **
9499384-G-T 9661775-G-T **
7218239-A-G 7350198-A-G FT174012 **
9373096-A-G 9535487-A-G **
8073233-A-G 8205192-A-G **
10925006-TCCACTC-T **
7258686-C-T 7390645-C-T **
7241824-C-T 7373783-C-T **
7239593-C-A 7371552-C-A **
7156942-G-T 7288901-G-T **
56705885-A-T **
7154595-A-G 7286554-A-G **
7044490-G-T 7176449-G-T **
7044450-G-T 7176409-G-T **
7013486-A-G 7145445-A-G **
6917149-C-A 7049108-C-A **
6892040-G-A 7023999-G-A **
6694766-C-T 6826725-C-T **
10914187-A-G **
21556632-T-C 19394746-T-C **
10925063-C-G **
15971469-C-T 13859589-C-T **
16515873-T-C 14403993-T-C **
16515871-T-C 14403991-T-C **
22881058-C-CTCTT 20719172-C-CTCTT 5×TCTT**
16295048-G-A 14183168-G-A **
15971491-G-A 13859611-G-A **
15971475-T-G 13859595-T-G **
15971471-A-G 13859591-A-G **
15971454-C-T 13859574-C-T **
16701645-G-A 14589765-G-A **
15816414-C-T 13704534-C-T **
15686611-C-A 13574731-C-A **
15532386-G-A 13420506-G-A **
24353126-G-T 22206979-G-T P3_t1 **
15369161-C-T 13257281-C-T **
15288762-T-A 13176861-T-A FT175504 **
24573424-T-TC 22427277-T-TC P3_t2 **
16623126-C-G 14511246-C-G **
22874452-C-A 20712566-C-A **
15128102-G-A 13016189-G-A **
22325648-A-C 20163762-A-C DYZ19 **
21212828-G-T 19050942-G-T **
20280214-C-T 18118328-C-T P5_Dst **
20280202-TC-T 18118316-TC-T P5_Dst **
20280194-C-T 18118308-C-T P5_Dst **
20053190-G-T 17941310-G-T P5_Prx **
19793885-T-A 17682005-T-A P5_Prx **
19758823-C-A 17646943-C-A P5_Prx **
19414950-C-T 17303070-C-T FT176952 **
17085677-G-T 14973797-G-T **
18902086-A-G 16790206-A-G **
18395810-A-G 16283930-A-G P6_Gap **
18370891-C-T 16259011-C-T P6_Prx **
18345943-AAT-A 16234063-AAT-A P6_Prx 9×ATAC**
17928391-C-A 15816511-C-A **
17466740-C-T 15354860-C-T **
17374820-G-T 15262940-G-T **
22782565-T-C 20620679-T-C **
15189748-C-A 13077834-C-A **
15127964-A-C 13016051-A-C **
10927477-T-A **
11027059-A-G **
13539988-G-T 11384312-G-T **
13491064-T-G 11335388-T-G **
13278619-A-G 11122943-A-G **
13198802-C-T 11043126-C-T **
28529321-C-A 26383174-C-A **
11031245-A-G **
11027074-C-CAATCT **
11025815-G-T **
13620678-T-G 11465002-T-G **
11025789-G-T **
11018657-C-A **
11007345-C-A **
10996126-C-G **
10988747-T-C **
21624814-G-A 19462928-G-A **
10955289-T-A **
10941505-A-T **
13566725-G-T 11411049-G-T **
13707093-G-C 11551417-G-C **
14609748-G-C 12497950-G-C **
14431446-C-G 12310719-C-G **
14609720-G-T 12497922-G-T **
14608072-C-A 12496274-C-A **
14605696-C-A 12493898-C-A **
14574701-C-A 12462901-C-A **
14558456-C-A 12446657-C-A **
14431460-A-G 12310733-A-G **
14431459-G-C 12310732-G-C **
14366488-C-T 12245783-C-T FT138405 **
28526309-G-T 26380162-G-T **
26251331-A-G 24105184-A-G P1_Y1 **
26328762-C-A 24182615-C-A P1_Y1 **
13952995-C-A 11832289-C-A **
13908376-G-A 11787670-G-A **
10678608-A-T **
13809630-A-C 11688924-A-C **
11668283-C-T **
11664755-G-T **
10967526-T-TCCACA **
17994873-AC-A 15882993-AC-A P7_Prx **
14609741-C-T 12497943-C-T **
10948356-T-C **
10803943-T-C **
10969068-C-T **
13556867-C-A 11401191-C-A **
14344978-C-A 12224273-C-A **
56750056-G-T **
20019186-T-TA 17907306-T-TA P5_Prx **
14052928-C-A 11932222-C-A **
23609394-A-AT 21447508-A-AT 9×T**
3640700-C-A 3772659-C-A **
13893525-C-A 11772819-C-A **
10937392-T-C **
14609722-A-G 12497924-A-G **
14562818-C-A 12451018-C-A **
10683718-T-C **
10827106-T-C **
10759824-C-A **
15971487-T-C 13859607-T-C **
10996092-T-A **
10960538-C-A **
13226644-C-A 11070968-C-A **
16422402-C-A 14310522-C-A **
10877787-A-G **
14609747-T-C 12497949-T-C **
11013897-C-T **
10899092-G-C **
10996071-G-C **
14784701-C-CTT 12672771-C-CTT 22×T**
9075188-C-CTT 9237579-C-CTT 20×T**
56750050-G-T **
16060534-C-A 13948654-C-A **
23393083-C-A 21231197-C-A **
9607710-TG-T 9770101-TG-T IR3_Prx **
5358625-C-A 5490584-C-A **
13961747-C-A 11841041-C-A **
14609710-G-T 12497912-G-T **
10815096-C-T **
14609708-G-A 12497910-G-A **
14609707-G-C 12497909-G-C **
10937394-C-CCTTTCCGTTG **
19558252-C-A 17446372-C-A **
10921525-C-A **
19246065-C-A 17134185-C-A **
10925064-C-A **
10983360-T-C **
13206505-C-A 11050829-C-A **
13961702-T-G 11840996-T-G **
11027782-G-C **
10813604-T-G **
10813601-C-G **
11013905-C-T **
10978773-C-A **
11013895-C-T **
10858475-T-C **
10840209-T-C FGC77923 **
10877801-T-A **
28818160-G-T 26672013-G-T **
10899085-C-A **
10899082-C-T **
10984522-G-T **
10984511-G-C **
11031267-G-A **
10776156-A-T **
10984498-C-T **
10984491-A-T **
10984475-T-A **
10984473-A-C **
15468279-C-A 13356399-C-A **
14097945-ATTT-A 11977239-ATTT-A 23×T**
10772718-A-C **
9416731-G-GTT 9579122-G-GTT 23×T**
11013936-T-C **
11013913-CCCTCT-C **
7154797-CAAAA-C 7286756-CAAAA-C 18×A**
10654591-T-C **
13475543-G-A 11319867-G-A **
10900095-A-C **
10885169-T-A **
10692097-C-T **
6241003-A-G 6372962-A-G IR3_Dst **
10789329-C-G **
10946668-C-A **
18756270-C-A 16644390-C-A **
10858458-C-CGTTCT **
15321358-T-A 13209476-T-A **
10885196-C-G **
10885183-A-G **
10800967-C-T **
10858465-T-C **
14316265-C-A 12195559-C-A FT175151 **
10996078-T-C **
13463757-T-A 11308081-T-A **
6593370-C-A 6725329-C-A **
10885172-CACTGA-C **
7832214-TTCTTTTTC-T 7964173-TTCTTTTTC-T **
5186497-G-T 5318456-G-T **
5275625-G-T 5407584-G-T **
10895816-CAT-C **
10895815-C-CTT **
21513962-C-A 19352076-C-A **
10941512-C-A **
9928883-AAC-A 10091274-AAC-A **
19668816-T-AA 17556936-T-AA P5_Prx **
3559887-C-A 3691846-C-A **
15971464-A-G 13859584-A-G **
13463755-C-T 11308079-C-T **
10983355-G-T **
58993698-T-G 56847551-T-G **
23210066-C-A 21048180-C-A **
25892409-A-AG 23746262-A-AG P1_Y1 **
10985056-TTCCAC-T **
26170582-G-GAAT 24024435-G-GAAT P1_Y1 **
10881873-G-T **
13253594-C-A 11097918-C-A **
15924019-C-A 13812139-C-A **
10656078-C-A **
14281092-C-A 12160386-C-A **
5621287-CGTGT-C 5753246-CGTGT-C **
9557595-G-A 9719986-G-A IR3_Prx **
10969061-C-T **
13940098-C-A 11819392-C-A **
10770380-T-A **
6247980-A-T 6379939-A-T IR3_Dst **
6247977-C-G 6379936-C-G IR3_Dst **
11027036-C-T **
58884982-T-A 56705889-A-T **
15798189-G-C 13686309-G-C **
10629642-CA-GGTTTT **
10925045-T-A **
8403308-G-A 8535267-G-A FT174448 **
10812526-C-A **
14061458-T-C 11940752-T-C **
19963830-GCAT-G 17851950-GCAT-G P5_Prx **
13909361-C-A 11788655-C-A **
7107011-CTATATATA-C 7238970-CTATATATA-C 20×TA**
56847605-C-A **
6039775-C-A 6171734-C-A **
10925050-T-C **
10772668-TTCCAC-T **
10984437-C-G **
5021957-C-A 5153916-C-A **
5204538-C-A 5336497-C-A **
22027746-C-A 19865860-C-A **
16044264-C-A 13932384-C-A **
15767030-C-A 13655150-C-A **
23262732-C-A 21100846-C-A **
18579152-C-A 16467272-C-A **
10937411-A-ATGCCT **
15735673-C-T 13623793-C-T **
18748842-C-A 16636962-C-A **
10629687-C-A **
8705985-C-A 8837944-C-A **
10664627-A-C **
5215731-C-A 5347690-C-A **
15767080-C-A 13655200-C-A **
14032511-C-A 11911805-C-A **
10899109-C-T **
10914194-G-C **
7231184-C-A 7363143-C-A **
3327945-C-A 3459904-C-A **
18518268-GTTT-G 16406388-GTTT-G P6_Dst 24×T**
11031226-T-C **
10895832-A-T **
10685522-C-A **
10759849-C-G **
11033721-AACTAC-A **
6699020-ATTT-A 6830979-ATTT-A 24×T**
10677264-G-T **
10895965-C-A **
2693431-C-A 2825390-C-A **
10996073-C-T **
7821016-C-A 7952975-C-A **
4094635-C-A 4226594-C-A **
10988752-T-G **
10776170-C-G **
21211516-C-A 19049630-C-A **
10973650-T-A **
14531070-C-A 12419271-C-A **
13865812-A-C 11745106-A-C **
19429800-C-A 17317920-C-A **
13140162-A-G 10629648-A-G **
10997911-C-A **
15742418-C-A 13630538-C-A **
7108907-C-A 7240866-C-A M1287 CTS959 ***
21656836-GAAATAAAATA-G 19494950-GAAATAAAATA-G 10×AAATA***
16520992-C-CAA 14409112-C-CAA 16×A***
13442657-C-T 11286981-C-T BY41737 ***
2803691-C-A 2935650-C-A ***
22209044-A-G 20047158-A-G ***
10772707-A-T ***
4557342-A-G 4689301-A-G ***
10964164-C-A ***
9730927-C-A 9893318-C-A IR3_Prx ***
7240704-T-C 7372663-T-C ***
8016938-CT-C,CTT 8148897-CT-C,CTT 25×T***
10789347-T-A ***
21425339-CTTTTT-C,CTTTT 19263453-CTTTTT-C,CTTTT 24×T***
10036038-C-A 10198429-C-A ***
10661993-C-A ***
17668340-C-A 15556460-C-A ***
15183055-C-A 13071141-C-A ***
21796585-C-A 19634699-C-A ***
13202664-G-T 11046988-G-T ***
13488346-G-C 11332670-G-C ***
15982168-G-GA,GAA 13870288-G-GA,GAA 15×A***
58982789-C-A 56836642-C-A ***
13720651-C-A 11564975-C-A ***
22951322-C-A 20789436-C-A ***
10789344-C-G ***
10673910-T-A,C ***
18636628-TTG-G,T 16524748-TTG-G,T ***
10801656-C-G ***
14464461-G-A 12343734-G-A ***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.

Age Analysis Information (work in progress)

AllMcDonaldYFull
Kit: 146374981566680063247887256
Used in age calculations981566680063247887256
Counts of SNPs3028
Variant counts last updated 2019-10-28 04:27:16.



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