Tree Position

R-P312/S116 > Z290 > L21/S145 > DF13 > FGC11134 > ZZ44 > A9871 > BY20951

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19) POS-REF-ALT (hg38) Blocks Names Region McDonald BED combBED STRBigY3
IN37125
BigY2
IN37125
13712023-G-C 11556347-G-C BY30149 A+A+
18011029-G-T 15899149-G-T P7_Dst YA*
3195537-A-G 3327496-A-G A*
5315502-G-GT 5447461-G-GT 11×TA*
13478766-C-T 11323090-C-T A*
13478765-G-A 11323089-G-A A*
16097574-T-G 13985694-T-G P8_Prx A*
3250166-C-T 3382125-C-T FGC54909 A*
56831260-A-T A*
20557621-C-CTG 18395735-C-CTG P5_Dst 19×TGA*
5082124-A-G 5214083-A-G A*
18325701-A-AT 16213821-A-AT P6_Prx 27×TA*
28784397-A-T 26638250-A-T A*
13463048-T-G 11307372-T-G A*
20224589-G-A 18062703-G-A P5_Dst A*
19891064-G-GT 17779184-G-GT P5_Prx 10×TA*
25978768-C-T 23832621-C-T P1_Y1 A*A*
28620201-C-CA 26474054-C-CA 11×AA*
28801347-A-G 26655200-A-G A*
19906569-T-C 17794689-T-C P5_Prx A*A*
10682632-G-A A*
4014266-C-T 4146225-C-T FGC81631 A*
56831556-G-T A*
13449884-T-C 11294208-T-C A*
25864141-G-A 23717994-G-A P1_Y1 A*A*
13463392-G-A 11307716-G-A A*
24298181-C-T 22152034-C-T P3_t1 A*A*
4828274-A-T 4960233-A-T A*
10668155-C-T +
9482227-T-G 9644618-T-G +**
3378591-G-A 3510550-G-A +
18670617-A-G 16558737-A-G BY183401 YY++
4111683-CTG-C 4243642-CTG-C +
18552175-A-C 16440295-A-C BY183391 Y++
19252214-T-G 17140334-T-G Y+
14904528-G-A 12792595-G-A BY183044 YY++
8133374-C-T 8265333-C-T BY182727 YY++
15518356-T-C 13406476-T-C BY183100 YY++
15542112-A-AGTT 13430232-A-AGTT +**
15652313-A-G 13540433-A-G BY183110 YY++
7580792-A-G 7712751-A-G BY182657 YY++
7580784-C-G 7712743-C-G BY182656 YY++
22046170-C-T 19884284-C-T BY183621 YY++
7331572-C-G 7463531-C-G BY182635 YY++
20823206-G-A 18661320-G-A P4_Gap ++
18238172-A-T 16126292-A-T BY183378 Y++
5692743-C-T 5824702-C-T +
3918204-T-C 4050163-T-C +
17777465-C-T 15665585-C-T Y+
13692323-A-C 11536647-A-C BY211029 **+
4134485-A-C 4266444-A-C FT289 +
14474780-C-G 12354049-C-G YY+
56859286-A-T +
14474781-T-G 12354050-T-G YY+
13583185-C-A 11427509-C-A +
17250409-G-C 15138529-G-C Y+
10837936-T-A +
22782816-C-T 20620930-C-T YY+
7045638-G-T 7177597-G-T YY+
18862060-G-T 16750180-G-T Y+
10997710-G-GTTCCA *
4014087-C-T 4146046-C-T FGC81619 *
13463551-A-G 11307875-A-G *
13463578-C-A 11307902-C-A *
13463547-C-A 11307871-C-A *
28677248-G-GT 26531101-G-GT 12×T*
4032759-A-T 4164718-A-T FGC54420 *
22422163-C-G 20260277-C-G DYZ19 ****
7474416-GA-G 7606375-GA-G IR1_L *
3919894-A-G 4051853-A-G *
11003720-T-TTCCAC *
13463523-G-A 11307847-G-A *
13463582-C-G 11307906-C-G *
5411068-A-G 5543027-A-G FGC41245 *
4618745-A-G 4750704-A-G *
13888692-T-G 11767986-T-G YY9×TG*
13463574-G-A 11307898-G-A *
3927001-A-C 4058960-A-C *
3248829-C-T 3380788-C-T *
3724245-A-G 3856204-A-G *
3741749-G-A 3873708-G-A *
3924037-T-A 4055996-T-A *
4024937-AT-A 4156896-AT-A *
4024960-T-A 4156919-T-A *
3920101-T-C 4052060-T-C *
3940967-A-G 4072926-A-G *
13463575-G-GA 11307899-G-GA *
59030118-C-T 56883971-C-T *
3917844-G-A 4049803-G-A *
10652462-C-A **
10851096-T-A **
7107470-C-T 7239429-C-T ****
6196370-A-T 6328329-A-T IR3_Dst **
6916197-G-C 7048156-G-C **
10851098-T-A **
6340385-T-A 6472344-T-A IR3_Dst **
10864703-C-T **
6196400-C-A 6328359-C-A IR3_Dst **
6196412-G-T 6328371-G-T IR3_Dst **
9926729-T-C 10089120-T-C **
6648619-T-TC 6780578-T-TC **
10851092-T-C **
6340423-T-A 6472382-T-A IR3_Dst **
6340397-G-T 6472356-G-T IR3_Dst **
9120308-C-A **
10851084-C-A **
7343352-G-T 7475311-G-T **
8908095-T-A 9040054-T-A **
9117648-G-T **
10677513-T-TTACAG **
9215102-G-A 9377493-G-A **
9342733-G-C 9505124-G-C **
10677526-C-A **
8911596-CA-C 9043555-CA-C **
8776538-G-C 8908497-G-C **
9575673-T-A 9738064-T-A IR3_Prx **
9342734-AC-A 9505125-AC-A **
10754934-CTCCATTCCATTCCATTCCAT-C **
10796689-T-C **
10851082-T-A **
7775027-C-A 7906986-C-A **
9438134-T-G 9600525-T-G **
7433590-G-A 7565549-G-A **
26060210-C-A 23914063-C-A P1_Y1 **
19351458-C-A 17239578-C-A **
5870164-C-A 6002123-C-A **
11648370-G-A **
11014349-T-A **
20048169-T-C 17936289-T-C P5_Prx **
9944088-G-T 10106479-G-T **
17224409-C-A 15112529-C-A **
5190254-C-A 5322213-C-A **
13474026-G-C 11318350-G-C **
13474018-A-G 11318342-A-G **
13711999-G-C 11556323-G-C BY192404 **
23099878-C-A 20937992-C-A **
16104356-A-T 13992476-A-T P8_Prx **
10962760-C-A **
11648368-T-A **
21934624-G-A 19772738-G-A **
9109481-G-T **
23425409-C-A 21263523-C-A **
13242946-C-A 11087270-C-A **
13943166-C-A 11822460-C-A **
19130772-G-TTTT 17018892-G-TTTT **
28707539-C-T 26561392-C-T **
11648408-C-T **
11648404-T-G **
11648383-C-T **
11648379-T-A **
11648375-G-C **
22132904-C-A 19971018-C-A **
15424465-C-A 13312585-C-A **
5480748-C-A 5612707-C-A **
15179058-A-G 13067144-A-G **
5459998-T-A 5591957-T-A **
5310301-G-T 5442260-G-T **
4503015-T-A 4634974-T-A **
4485599-C-A 4617558-C-A **
3512394-G-T 3644353-G-T **
3148804-T-A 3280763-T-A **
2885584-C-A 3017543-C-A **
2683383-G-A 2815342-G-A **
2680955-A-C 2812914-A-C **
19609451-A-G 17497571-A-G P5_Prx **
13828225-A-T 11707519-A-T FGC44467 **
10983973-T-C **
20311627-A-G 18149741-A-G P5_Dst **
10776520-TC-T **
20424844-G-T 18262958-G-T P5_Dst **
6997955-C-A 7129914-C-A **
13653238-C-A 11497562-C-A **
21009207-TA-T 18847321-TA-T P4_Dst **
10927646-C-A **
10668867-C-A **
10980723-C-A **
13588744-C-A 11433068-C-A **
17547599-C-A 15435719-C-A **
16738641-G-T 14626761-G-T **
10884876-C-A **
15558114-G-A 13446234-G-A **
10983925-C-T **
27647695-G-T 25501548-G-T P1_Y2 **
13468684-T-A 11313008-T-A **
13468672-A-G 11312996-A-G **
25557519-C-CTT 23411372-C-CTT P1_gr1 10×T**
13481660-C-A 11325984-C-A **
28812551-T-C 26666404-T-C **
28812532-G-T 26666385-G-T **
28745068-A-G 26598921-A-G **
28512777-C-A 26366630-C-A **
28113236-C-A 25967089-C-A P1_Y2 **
28113152-C-A 25967005-C-A P1_Y2 **
27902058-A-G 25755911-A-G P1_Y2 **
27216666-C-T 25070519-C-T P1_g3 **
5936156-A-C 6068115-A-C **
25850841-T-C 23704694-T-C P1_Y1 **
24315722-C-A 22169575-C-A P3_t1 **
23339200-C-A 21177314-C-A **
23338857-C-T 21176971-C-T **
22486938-A-G 20325052-A-G BY172333 DYZ19 **
22277536-G-T 20115650-G-T DYZ19 **
21940393-C-CAAA 19778507-C-CAAA 17×A**
21679035-C-A 19517149-C-A **
21551393-C-T 19389507-C-T **
21450492-A-C 19288606-A-C **
20869021-GTTTTTTT-G 18707135-GTTTTTTT-G P4_Dst 21×T**
13481636-C-T 11325960-C-T **
3370437-A-G 3502396-A-G **
20333835-C-CAAA 18171949-C-CAAA P5_Dst 24×A**
17967555-A-G 15855675-A-G **
26138797-T-C 23992650-T-C P1_Y1 **
22984143-C-A 20822257-C-A **
22984141-T-A 20822255-T-A **
22984129-T-C 20822243-T-C **
22984122-T-C 20822236-T-C **
22984120-C-T 20822234-C-T **
22489031-G-T 20327145-G-T DYZ19 **
22204392-C-T 20042506-C-T **
21624929-A-T 19463043-A-T **
20343706-A-T 18181820-A-T P5_Dst **
18335170-C-A 16223290-C-A P6_Prx **
17684357-G-A 15572477-G-A **
4321404-C-T 4453363-C-T **
17245306-A-G 15133426-A-G **
16099739-G-T 13987859-G-T P8_Prx **
15937009-A-G 13825129-A-G **
13971601-G-A 11850895-G-A **
13808719-G-GACC 11688013-G-GACC **
13808718-T-TCA 11688012-T-TCA **
13493812-C-T 11338136-C-T **
5784604-T-TA 5916563-T-TA **
5448010-G-C 5579969-G-C **
5009561-T-C 5141520-T-C **
4547334-A-G 4679293-A-G **
20815432-TA-T 18653546-TA-T P4_Gap **
20201346-A-T 18039460-A-T P5_Dst **
10983954-C-CT **
11654268-G-T **
14823777-C-A 12711844-C-A **
12379355-C-A **
14377695-G-A 12256991-G-A **
14315603-A-G 12194897-A-G **
14315582-C-T 12194876-C-T **
14315572-A-G 12194866-A-G **
13999093-C-T 11878387-C-T **
13902936-C-A 11782230-C-A **
13902805-T-C 11782099-T-C **
13847218-G-T 11726512-G-T **
13835202-GT-G 11714496-GT-G **
13708391-A-T 11552715-A-T **
15111458-C-T 12999545-C-T **
13708344-C-T 11552668-C-T **
13477489-C-T 11321813-C-T **
13471952-C-A 11316276-C-A **
13469679-A-G 11314003-A-G **
13416768-C-A 11261092-C-A **
13315829-C-A 11160153-C-A **
13312652-C-G 11156976-C-G *****
13307525-C-A 11151849-C-A **
13254656-C-A 11098980-C-A **
11011860-C-A **
10983955-CA-C **
14909511-A-G 12797578-A-G **
15179100-T-A 13067186-T-A **
20201342-A-T 18039456-A-T P5_Dst **
18412332-A-G 16300452-A-G P6_Gap **
19894218-A-ATTCT 17782338-A-ATTCT P5_Prx **
19894216-G-AAT 17782336-G-AAT P5_Prx **
19674783-C-A 17562903-C-A P5_Prx **
19415122-A-G 17303242-A-G **
19377135-G-A 17265255-G-A **
19168592-A-T 17056712-A-T **
18928567-AT-A 16816687-AT-A **
18754882-G-T 16643002-G-T **
18412352-CA-C 16300472-CA-C P6_Gap **
18412342-A-T 16300462-A-T P6_Gap **
18412338-A-C 16300458-A-C P6_Gap **
18398176-C-G 16286296-C-G P6_Gap **
15450123-C-A 13338243-C-A **
18329600-G-T 16217720-G-T P6_Prx **
18261982-T-A 16150102-T-A **
17969013-C-T 15857133-C-T **
17346290-C-A 15234410-C-A **
16423868-A-C 14311988-A-C **
16405500-T-C 14293620-T-C **
16344985-T-G 14233105-T-G **
16318126-G-T 14206246-G-T **
16045569-C-A 13933689-C-A **
15927847-T-C 13815967-T-C **
15647906-T-A 13536026-T-A **
13709259-C-A 11553583-C-A **
11648405-A-C **
56862447-G-A **
28774508-C-A 26628361-C-A **
13456265-A-C 11300589-A-C **
16069871-T-TA 13957991-T-TA 11×A**
15084429-C-CA 12972519-C-CA 13×A**
15411345-C-A 13299465-C-A **
10873157-C-T **
10873143-C-CTCTCG **
10873140-T-A **
16886952-C-A 14775072-C-A **
9914417-G-A 10076808-G-A **
23438871-G-T 21276985-G-T **
21540915-C-T 19379029-C-T FGC35132 **
10851136-A-T **
10652944-C-TGATTA **
26204654-G-T 24058507-G-T P1_Y1 **
27937836-GAAAA-G 25791689-GAAAA-G P1_Y2 17×A**
10873117-G-T **
10873099-A-G **
10873089-A-T **
9429667-C-CAA 9592058-C-CAA 25×A**
19860882-T-A 17749002-T-A P5_Prx **
26991394-C-A 24845247-C-A P1_r4 **
15111467-C-T 12999554-C-T **
9437253-C-A 9599644-C-A **
6541314-C-A 6673273-C-A **
23106019-CT-C 20944133-CT-C 11×T**
23654842-A-G 21492956-A-G **
15011705-C-A 12899793-C-A **
13708345-G-T 11552669-G-T **
18184939-C-A 16073059-C-A **
22422920-A-T 20261034-A-T DYZ19 **
10851145-C-A **
13695497-G-C 11539821-G-C **
14384564-G-T 12263860-G-T **
10677528-G-T **
22241640-A-T 20079754-A-T DYZ19 **
16505136-C-A 14393256-C-A **
10857203-G-T **
14315609-T-C 12194903-T-C **
3759088-C-A 3891047-C-A **
13695542-A-T 11539866-A-T **
28253534-T-A 26107387-T-A P1_b4 **
10873055-C-T **
13808719-G-A 11688013-G-A **
8720264-C-A 8852223-C-A **
23425395-C-CA 21263509-C-CA **
10956664-G-C **
10956661-C-A **
10956656-T-C **
10956654-G-A **
10956653-T-A **
10956651-T-C **
26204667-T-A 24058520-T-A P1_Y1 **
58975043-TTCGAA-T 56828896-TTCGAA-T **
10989189-C-T **
26229945-T-TC 24083798-T-TC P1_Y1 **
10755413-A-T **
10755394-C-CTGT **
10755392-A-AT **
19537901-CAA-C 17426021-CAA-C 17×A**
13695519-G-T 11539843-G-T **
10983924-G-C **
14888076-CTT-C 12776142-CTT-C 17×T**
21367438-CT-C 19205552-CT-C 12×T**
13462142-C-G 11306466-C-G **
10956690-A-G **
10776525-T-G **
7218178-G-T 7350137-G-T **
28253542-T-A 26107395-T-A P1_b4 **
23425395-C-A 21263509-C-A **
20025410-TC-T 17913530-TC-T P5_Prx **
10747997-T-A **
10747987-G-A **
28008593-A-AC 25862446-A-AC P1_Y2 **
14149416-C-A 12028710-C-A **
8878804-A-T 9010763-A-T **
26103022-A-T 23956875-A-T P1_Y1 9×T**
13462115-C-G 11306439-C-G **
13808733-T-A 11688027-T-A **
13462098-T-A 11306422-T-A **
11003599-C-A **
16583392-G-GA 14471512-G-GA 10×A**
13469948-C-A 11314272-C-A **
19706126-CAT-C 17594246-CAT-C P5_Prx **
10987793-C-T **
10866316-C-G **
10866304-T-C **
10755441-C-CAATTT **
5936159-G-T 6068118-G-T 19×AT**
17903354-C-A 15791474-C-A **
15012296-CTTTT-C 12900384-CTTTT-C 17×T**
16842620-C-A 14730740-C-A **
10835567-C-A **
14315583-A-G 12194877-A-G **
7224104-C-A 7356063-C-A **
18767186-CT-C 16655306-CT-C 16×T**
25030925-C-A 22884778-C-A g1 **
5784604-T-A 5916563-T-A **
28113196-A-AG 25967049-A-AG P1_Y2 **
6505367-C-A 6637326-C-A **
10956612-T-G **
20778587-G-T 18616701-G-T P4_Prx **
10956646-T-A **
10956638-C-G **
10956592-TC-T **
22520810-AAG-A 20358924-AAG-A **
13481650-T-G 11325974-T-G **
13481642-G-A 11325966-G-A BY86080 **
10956595-A-AT **
10956629-C-A **
4124171-C-A 4256130-C-A **
2986331-C-A 3118290-C-A **
58973009-A-C 56826862-A-C **
13481626-T-C 11325950-T-C **
19304280-C-A 17192400-C-A **
10866307-C-A **
10866302-A-T **
18454787-C-T 16342907-C-T P6_Dst **
13653223-C-A 11497547-C-A **
10980682-C-A **
2986365-C-A 3118324-C-A **
6688915-C-CA 6820874-C-CA 8×A*****
4078586-G-T 4210545-G-T **
13487976-G-A 11332300-G-A **
28788028-G-T 26641881-G-T **
7182022-C-A 7313981-C-A **
13468707-G-A 11313031-G-A **
56833856-A-C **
9942307-C-A 10104698-C-A **
3728720-G-T 3860679-G-T **
28480128-C-A 26333981-C-A **
13468650-ACC-A 11312974-ACC-A **
10980742-TC-T **
10866319-G-T **
15679881-C-A 13568001-C-A **
15844835-C-A 13732955-C-A **
13453189-C-T 11297513-C-T **
10851112-C-G **
10851118-C-G **
10851124-CT-C **
7704959-C-A 7836918-C-A FGC51616 **
5621237-C-A 5753196-C-A **
7237331-C-A 7369290-C-A A15541 **
5346098-A-G 5478057-A-G **
10916195-G-T **
58978993-G-T 56832846-G-T **
19532514-C-A 17420634-C-A **
19507170-C-A 17395290-C-A **
13468648-C-CAGG 11312972-C-CAGG **
13531753-C-CA 11376077-C-CA 23×A***
13954127-AAATAAT-A 11833421-AAATAAT-A 12×AAT***
13808739-G-A 11688033-G-A ***
13508196-G-A 11352520-G-A ***
13472549-C-T 11316873-C-T ***
7630475-G-A 7762434-G-A ***
6473334-G-GAA 6605293-G-GAA 13×A***
7383851-CAA-C,CAAA 7515810-CAA-C,CAAA 24×A***
10626093-A-G ***
10626041-T-C ***
13223534-T-G 11067858-T-G ***
13488049-G-A 11332373-G-A ***
7996111-A-G 8128070-A-G ***
18454789-T-C 16342909-T-C P6_Dst ***
23197841-CT-C 21035955-CT-C ***
13696647-A-T 11540971-A-T ***
3240355-ATT-A 3372314-ATT-A 19×T***
28601567-A-G 26455420-A-G ***
22871996-C-CA 20710110-C-CA 15×A***
4672485-A-T 4804444-A-T ***
23569218-G-T 21407332-G-T ***
23076236-T-A 20914350-T-A ***
5303350-A-AT 5435309-A-AT 22×T***
6149963-G-A 6281922-G-A BY47484 IR3_Dst ***
13487875-T-A,C 11332199-T-A,C ***
3990031-G-A 4121990-G-A ***
6149964-T-C 6281923-T-C IR3_Dst ***
10626079-C-T ***
3927608-T-C 4059567-T-C ***
5598178-GT-G 5730137-GT-G 10×T***
13459268-T-C 11303592-T-C ***
13469953-G-T 11314277-G-T ***
14171527-T-A 12050821-T-A ***
3557388-TG-T 3689347-TG-T ***
8218132-T-C 8350091-T-C ***
2694435-GCA-G 2826394-GCA-G 10×CA***
3246748-T-C 3378707-T-C ***
4000837-T-C 4132796-T-C ***
2752397-G-A 2884356-G-A ***
22995375-TG-T 20833489-TG-T ***
16256948-T-G 14145068-T-G ***
16421986-C-T 14310106-C-T ***
16475324-CGG-C 14363444-CGG-C 11×G***
59006817-G-GA 56860670-G-GA 9×A***
13463608-T-G 11307932-T-G ***
13808695-G-GAATTT 11687989-G-GAATTT ***
6091720-ATTTT-A 6223679-ATTTT-A 28×T***
14680960-C-CA 12569026-C-CA 11×A***
3878644-CA-C,CAA 4010603-CA-C,CAA 15×A***
19413182-TG-T 17301302-TG-T ***
3927594-T-G 4059553-T-G ***
3271292-G-A 3403251-G-A ***
3015575-T-TAC 3147534-T-TAC 17×AC***
6040928-CA-C 6172887-CA-C 12×A***
21464771-G-GTTCTTCTTC 19302885-G-GTTCTTCTTC 16×TTC***
4651422-G-GA 4783381-G-GA 11×A***
13808745-G-GAAACC 11688039-G-GAAACC ***
28576571-T-A 26430424-T-A ***
7282159-CTTTT-C,CTT 7414118-CTTTT-C,CTT 22×T***
13463515-T-C 11307839-T-C ***
17141942-CTG-C 15030062-CTG-C 8×TG***
28576568-T-A 26430421-T-A ***
3700107-T-TA 3832066-T-TA 15×A***
4832773-C-CT 4964732-C-CT 14×T***
13808705-G-C 11687999-G-C ***
18760242-TTCTCTCTC-T 16648362-TTCTCTCTC-T 27×TC***
13242241-CTT-C 11086565-CTT-C 21×T***
6665057-T-TA 6797016-T-TA 12×A***
3571721-T-C 3703680-T-C ***
10776541-C-G ***
21362046-C-A 19200160-C-A ***
13808736-A-T 11688030-A-T ***
13470018-C-A 11314342-C-A ***
11014461-C-A ***
2928432-T-C 3060391-T-C ***
10682521-C-CCGTTA ***
16340147-GAAA-G 14228267-GAAA-G 22×A***
5480732-CT-C 5612691-CT-C 12×T***
14819674-CTTTTT-C 12707741-CTTTTT-C 15×T***
6957234-C-A 7089193-C-A ***
10987829-C-A ***
7237532-C-A 7369491-C-A ***
4118723-CA-C 4250682-CA-C 13×A***
7471241-C-A 7603200-C-A IR1_L ***
10682558-A-C ***
4373606-CTT-C 4505565-CTT-C 14×T***
8095461-G-A 8227420-G-A ***
3571753-T-G 3703712-T-G ***
4890660-CAAA-C 5022619-CAAA-C 18×A***
6465537-C-CT 6597496-C-CT 11×T***
13808750-G-T 11688044-G-T ***
11014467-C-T ***
7150401-AT-A 7282360-AT-A 13×T***
4539217-G-GA 4671176-G-GA 15×A***
13466404-T-C 11310728-T-C ***
13466385-A-G 11310709-A-G ***
8504198-TTGTG-T 8636157-TTGTG-T 19×TG***
4688514-T-C 4820473-T-C ***
13485896-G-A 11330220-G-A ***
13470669-G-A 11314993-G-A BY85844 ***
4477725-A-AT 4609684-A-AT 14×T***
13463585-C-T 11307909-C-T ***
13478734-G-A 11323058-G-A ***
5520571-GA-G 5652530-GA-G 11×A***
2672735-A-AT 2804694-A-AT 14×T***
15265253-ATT-A 13153342-ATT-A 14×T***
13476921-C-A 11321245-C-A ***
13476931-C-A 11321255-C-A ***
21152512-CTTT-C 18990626-CTTT-C 14×T***
16604971-C-A 14493091-C-A ***
13808758-T-C 11688052-T-C ***
59032242-C-CA 56886095-C-CA 11×A***
23267750-G-GA 21105864-G-GA 10×A***
3867534-G-GT 3999493-G-GT 12×T***
16463641-C-A 14351761-C-A ***
16679671-C-A 14567791-C-A ***
16729987-T-C 14618107-T-C ***
22996012-CAAA-C,CAA 20834126-CAAA-C,CAA 18×A***
22919325-GT-G,GTT 20757439-GT-G,GTT 20×T***
28801348-A-G 26655201-A-G ***
13463512-G-T 11307836-G-T ***
13487905-G-A 11332229-G-A ***
19438694-G-A 17326814-G-A ***
14097945-ATT-A 11977239-ATT-A 23×T***
10682548-A-T ***
10987854-C-G ***
28543953-C-CA 26397806-C-CA 11×A***
56834735-C-T ***
13696655-T-A 11540979-T-A ***
13486547-T-A 11330871-T-A ***
13478173-C-A 11322497-C-A ***
5904031-C-CA 6035990-C-CA 27×A***
9854343-CTTTT-C 10016734-CTTTT-C 19×T***
23274739-CTTT-C,CTT 21112853-CTTT-C,CTT 18×T***
15604354-C-CA 13492474-C-CA 20×A***
13455804-C-A 11300128-C-A ***
17030992-CAAAA-C 14919112-CAAAA-C 19×A***
13455772-T-TCCC 11300096-T-TCCC ***
28545880-CAAA-C 26399733-CAAA-C 20×A***
17389851-T-A 15277971-T-A ***
5977072-G-GTA 6109031-G-GTA 8×TA***
22127975-CTTTT-C 19966089-CTTTT-C 20×T***
16045054-AT-A,ATT 13933174-AT-A,ATT 13×T***
11014456-C-G ***
23759113-TAAAA-T 21597227-TAAAA-T 24×A***
14125248-GAA-G 12004542-GAA-G 14×A***
13469946-A-T 11314270-A-T ***
13469136-G-A 11313460-G-A ***
13488446-C-A 11332770-C-A ***
11656017-A-T ***
10987860-A-T ***
10987853-C-A ***
10987832-T-C ***
10744211-A-C ***
14357386-C-A 12236681-C-A ***
13466422-G-C 11310746-G-C ***
13469960-A-T 11314284-A-T ***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.

Age Analysis Information (work in progress)

AllMcDonaldYFull
Kit: IN37125977712880277957949051
Kit: IN371251478148992711858239435
Used in age calculations1478148992711858239435
Counts of SNPs2015
Variant counts last updated 2019-07-19 23:00:15.



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