Bokemeier
BigY2: 235229MDKA Birth: Germany 1833
Tree Position
Unique Mutations
The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.
Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.
POS-REF-ALT (hg19) | POS-REF-ALT (hg38) | Blocks | Names | Region | McDonald BED | combBED | STR | BigY2 235229 |
---|---|---|---|---|---|---|---|---|
22235640-C-T | 20073754-C-T | DYZ19 | A+ | |||||
23897799-C-T | 21735913-C-T | Y | A+ | |||||
16102018-T-TTTTTG | 13990138-T-TTTTTG | P8_Prx | 6×TTTTG | A* | ||||
20689804-C-T | 18527918-C-T | BY212299 | P4_Prx | A* | ||||
22737211-C-A | 20575325-C-A | Y | Y | A* | ||||
6305454-G-A | 6437413-G-A | IR3_Dst | A* | |||||
6272393-G-A | 6404352-G-A | IR3_Dst | A* | |||||
18272386-A-G | 16160506-A-G | P6_Prx | A* | |||||
18298417-T-A | 16186537-T-A | P6_Prx | A* | |||||
18301248-T-C | 16189368-T-C | P6_Prx | A* | |||||
20663877-T-C | 18501991-T-C | P4_Prx | A* | |||||
22308353-T-C | 20146467-T-C | DYZ19 | A* | |||||
21223404-GA-G | 19061518-GA-G | 10×A | + | |||||
7797082-A-G | 7929041-A-G | Y | Y | + | ||||
8607254-A-T | 8739213-A-T | Y | Y | + | ||||
9376288-T-C | 9538679-T-C | Y | + | |||||
13649258-C-A | 11493582-C-A | BY87000 | + | |||||
17488835-C-T | 15376955-C-T | Y | Y | + | ||||
17746800-T-C | 15634920-T-C | Y | Y | + | ||||
17945228-T-C | 15833348-T-C | Y | Y | + | ||||
22440779-C-T | 20278893-C-T | FT456542 | DYZ19 | + | ||||
23581675-T-G | 21419789-T-G | Y | Y | + | ||||
23956956-G-C | 21810809-G-C | + | ||||||
24412538-C-G | 22266391-C-G | Y | + | |||||
24505782-T-C | 22359635-T-C | + | ||||||
24883927-A-G | 22737780-A-G | BY226273 | g1 | + | ||||
22241206-C-G | 20079320-C-G | DYZ19 | * | |||||
22317063-A-T | 20155177-A-T | DYZ19 | * | |||||
22334925-T-C | 20173039-T-C | DYZ19 | * | |||||
58912903-CTTTGG-C | 56677962-TCCAAA-T | ** | ||||||
14025988-GAGAAAGAAAGAAAGAA-G | 11905282-GAGAAAGAAAGAAAGAA-G | 13×AGAA | ** | |||||
14097937-A-C | 11977231-A-C | ** | ||||||
5022024-G-A | 5153983-G-A | ** | ||||||
3732951-TC-T | 3864910-TC-T | ** | ||||||
4298782-G-T | 4430741-G-T | ** | ||||||
5418162-AG-A | 5550121-AG-A | ** | ||||||
13828505-C-A | 11707799-C-A | ZS317 | ** | |||||
24013790-G-T | 21867643-G-T | ** | ||||||
58912778-C-T | 56678093-G-A | ** | ||||||
27497058-C-T | 25350911-C-T | P1_Y2 | ** | |||||
27497071-C-T | 25350924-C-T | P1_Y2 | ** | |||||
58988397-A-G | 56842250-A-G | ** | ||||||
22540571-TA-T | 20378685-TA-T | ** | ||||||
10749504-C-A | ** | |||||||
7534564-C-T | 7666523-C-T | ** | ||||||
28788027-G-A | 26641880-G-A | ** | ||||||
10764491-A-ATCCAT | ** | |||||||
21505578-G-T | 19343692-G-T | Y36297 | 13×T | ** | ||||
10796242-C-A | ** | |||||||
22277837-T-C | 20115951-T-C | DYZ19 | ** | |||||
10759847-T-A | ** | |||||||
10669383-C-T | ** | |||||||
16039215-C-A | 13927335-C-A | ** | ||||||
3599018-C-A | 3730977-C-A | ** | ||||||
56842262-G-A | ** | |||||||
14249103-C-A | 12128397-C-A | ** | ||||||
15733779-C-A | 13621899-C-A | ** | ||||||
7270306-C-G | 7402265-C-G | ** | ||||||
10768969-A-C | ** | |||||||
2718905-GAC-G | 2850864-GAC-G | ** | ||||||
10783852-T-C | ** | |||||||
10783856-C-T | ** | |||||||
10783869-T-C | ** | |||||||
13489040-G-A | 11333364-G-A | ** | ||||||
19461930-C-A | 17350050-C-A | FGC51874 | ** | |||||
20137187-CA-C | 18025307-CA-C | P5_Dst | 9×A | ** | ||||
9942979-C-A | 10105370-C-A | ** | ||||||
25333909-C-A | 23187762-C-A | P2_r1 | ** | |||||
10836513-C-CAATTT | ** | |||||||
19745051-G-T | 17633171-G-T | A3456 | P5_Prx | ** | ||||
19268352-C-A | 17156472-C-A | ** | ||||||
19253222-G-T | 17141342-G-T | ** | ||||||
18963846-C-A | 16851966-C-A | ** | ||||||
14440626-C-A | 12319899-C-A | ** | ||||||
17591847-C-A | 15479967-C-A | ** | ||||||
10950411-C-A | ** | |||||||
27497093-A-T | 25350946-A-T | P1_Y2 | ** | |||||
19558348-C-A | 17446468-C-A | ** | ||||||
10747032-C-A | ** | |||||||
13485595-A-G | 11329919-A-G | ** | ||||||
24884191-G-T | 22738044-G-T | g1 | ** | |||||
18810708-TA-T | 16698828-TA-T | ** | ||||||
18328814-T-G | 16216934-T-G | P6_Prx | ** | |||||
25333906-A-G | 23187759-A-G | P2_r1 | ** | |||||
16488059-C-A | 14376179-C-A | ** | ||||||
5927364-G-T | 6059323-G-T | ** | ||||||
14646276-C-A | 12534340-C-A | ** | ||||||
14097932-A-C | 11977226-A-C | ** | ||||||
14492594-G-T | 12380791-G-T | ** | ||||||
21488670-C-A | 19326784-C-A | ** | ||||||
15045630-C-A | 12933720-C-A | ** | ||||||
19732412-C-CACA | 17620532-C-CACA | P5_Prx | ** | |||||
11023031-C-A | ** | |||||||
21681802-C-A | 19519916-C-A | ** | ||||||
28788034-A-T | 26641887-A-T | ** | ||||||
3218671-C-A | 3350630-C-A | ** | ||||||
15832322-G-A | 13720442-G-A | ZS8588 | ** | |||||
10935366-G-C | ** | |||||||
14780946-C-A | 12669016-C-A | ** | ||||||
10664829-C-A | ** | |||||||
24353300-T-TCTC | 22207153-T-TCTC | P3_t1 | ** | |||||
15210828-C-A | 13098914-C-A | ** | ||||||
7150834-C-A | 7282793-C-A | ** | ||||||
14527002-C-A | 12415203-C-A | ** | ||||||
17575522-G-T | 15463642-G-T | ** | ||||||
19663362-A-T | 17551482-A-T | P5_Prx | ** | |||||
22428291-G-T | 20266405-G-T | DYZ19 | ** | |||||
13217979-C-A | 11062303-C-A | ** | ||||||
2905857-CTTTTT-C | 3037816-CTTTTT-C | 15×T | ** | |||||
8281797-G-A | 8413756-G-A | ** | ||||||
9624602-A-G | 9786993-A-G | IR3_Prx | ** | |||||
14285745-C-A | 12165039-C-A | ** | ||||||
22191698-T-TA | 20029812-T-TA | 9×A | ** | |||||
10933181-A-T | ** | |||||||
24415718-TTATATATATATATATATA-T | 22269571-TTATATATATATATATATA-T | 31×TA | ** | |||||
7853113-C-A | 7985072-C-A | ** | ||||||
23317707-G-T | 21155821-G-T | ** | ||||||
11014185-C-A | ** | |||||||
14981845-C-A | 12869913-C-A | ** | ||||||
18895681-C-A | 16783801-C-A | ** | ||||||
10994111-G-C | ** | |||||||
27263172-T-G | 25117025-T-G | P1_g3 | ** | |||||
5869553-C-A | 6001512-C-A | ** | ||||||
16786198-A-T | 14674318-A-T | ** | ||||||
7425302-C-A | 7557261-C-A | ** | ||||||
10935382-T-C | ** | |||||||
22629877-C-A | 20467991-C-A | ** | ||||||
5933437-C-A | 6065396-C-A | ** | ||||||
10783885-A-T | ** | |||||||
16056814-C-A | 13944934-C-A | ** | ||||||
13510152-C-A | 11354476-C-A | ** | ||||||
17375635-C-A | 15263755-C-A | ** | ||||||
8130449-C-A | 8262408-C-A | ** | ||||||
5446989-C-A | 5578948-C-A | ** | ||||||
15832212-TCTTC-T | 13720332-TCTTC-T | ** | ||||||
10911687-C-G | ** | |||||||
10911721-C-A | ** | |||||||
15565938-C-A | 13454058-C-A | ** | ||||||
9822742-TG-T | 9985133-TG-T | ** | ||||||
14316444-C-A | 12195738-C-A | ** | ||||||
4671570-C-A | 4803529-C-A | ** | ||||||
3251815-AT-A | 3383774-AT-A | ** | ||||||
3649025-C-A | 3780984-C-A | ** | ||||||
17588552-C-A | 15476672-C-A | ** | ||||||
10950378-A-T | ** | |||||||
10950414-T-C | ** | |||||||
10950426-C-A | ** | |||||||
10950449-T-A | ** | |||||||
10950450-T-A | ** | |||||||
10950456-C-A | ** | |||||||
10950474-C-A | ** | |||||||
10950482-C-T | ** | |||||||
10935357-T-C | ** | |||||||
7541302-G-T | 7673261-G-T | ** | ||||||
13502417-C-A | 11346741-C-A | ** | ||||||
10783889-T-C | ** | |||||||
10934276-C-G | ** | |||||||
21262249-C-A | 19100363-C-A | ** | ||||||
19259093-C-A | 17147213-C-A | ** | ||||||
18071885-C-A | 15960005-C-A | ** | ||||||
7336258-C-A | 7468217-C-A | ** | ||||||
17951617-C-A | 15839737-C-A | ** | ||||||
4918302-C-A | 5050261-C-A | ** | ||||||
17512574-C-A | 15400694-C-A | ** | ||||||
13472109-C-A | 11316433-C-A | ** | ||||||
10947367-C-A | ** | |||||||
6512301-C-A | 6644260-C-A | ** | ||||||
14609824-AT-A | 12498026-AT-A | ** | ||||||
14227695-C-A | 12106989-C-A | ** | ||||||
17545533-AG-A | 15433653-AG-A | ** | ||||||
18317564-G-T | 16205684-G-T | P6_Prx | ** | |||||
19894076-T-G | 17782196-T-G | P5_Prx | ** | |||||
24003148-C-A | 21857001-C-A | ** | ||||||
21263464-C-A | 19101578-C-A | ** | ||||||
15059783-C-A | 12947875-C-A | ** | ||||||
16709980-C-A | 14598100-C-A | ** | ||||||
19202848-C-A | 17090968-C-A | ** | ||||||
23255254-C-A | 21093368-C-A | ** | ||||||
15280199-C-A | 13168298-C-A | ** | ||||||
3732947-C-T | 3864906-C-T | ** | ||||||
15158632-T-A | 13046718-T-A | ** | ||||||
17196491-C-A | 15084611-C-A | ** | ||||||
28514454-C-A | 26368307-C-A | ** | ||||||
16921383-C-A | 14809503-C-A | ** | ||||||
6765642-T-G | 6897601-T-G | ** | ||||||
6826981-T-G | 6958940-T-G | ** | ||||||
13234289-C-A | 11078613-C-A | ** | ||||||
22125814-C-A | 19963928-C-A | ** | ||||||
23997646-G-T | 21851499-G-T | ** | ||||||
14266995-C-A | 12146289-C-A | ** | ||||||
13468201-C-T | 11312525-C-T | ** | ||||||
20533411-C-A | 18371525-C-A | P5_Dst | ** | |||||
4672391-C-A | 4804350-C-A | ** | ||||||
10987111-C-A | ** | |||||||
18263315-C-A | 16151435-C-A | ** | ||||||
10669395-A-T | ** | |||||||
11003853-C-T | ** | |||||||
17634608-C-A | 15522728-C-A | ** | ||||||
10935412-A-C | ** | |||||||
10795850-C-G | ** | |||||||
10664805-C-A | ** | |||||||
13316106-C-A | 11160430-C-A | ** | ||||||
18593428-C-A | 16481548-C-A | ** | ||||||
16739568-C-A | 14627688-C-A | ** | ||||||
4444442-G-T | 4576401-G-T | ** | ||||||
17039129-C-A | 14927249-C-A | ** | ||||||
3943419-CT-C | 4075378-CT-C | 10×T | ** | |||||
24904765-C-A | 22758618-C-A | g1 | ** | |||||
22776863-C-A | 20614977-C-A | ** | ||||||
28621418-G-T | 26475271-G-T | ** | ||||||
5558447-C-A | 5690406-C-A | ** | ||||||
8977941-C-A | 9140332-C-A | ** | ||||||
10673417-C-A | ** | |||||||
56861844-G-T | ** | |||||||
10889402-C-A | ** | |||||||
17277360-C-A | 15165480-C-A | ** | ||||||
10996195-G-T | ** | |||||||
5275456-A-C | 5407415-A-C | ** | ||||||
7282394-C-A | 7414353-C-A | ** | ||||||
7242686-C-A | 7374645-C-A | ** | ||||||
21438780-GT-G | 19276894-GT-G | ** | ||||||
9826042-C-A | 9988433-C-A | ** | ||||||
28544969-C-A | 26398822-C-A | ** | ||||||
5292123-C-A | 5424082-C-A | ** | ||||||
7381743-C-A | 7513702-C-A | ** | ||||||
18661609-T-C | 16549729-T-C | ** | ||||||
8855218-C-A | 8987177-C-A | BY206286 | ** | |||||
9987677-C-A | 10150068-C-A | ** | ||||||
6833333-C-A | 6965292-C-A | ** | ||||||
10795841-CA-T | ** | |||||||
18421578-C-A | 16309698-C-A | FT105648 | P6_Gap | ** | ||||
3065772-G-T | 3197731-G-T | ** | ||||||
3150299-A-G | 3282258-A-G | ** | ||||||
3202262-G-T | 3334221-G-T | ** | ||||||
3275355-T-C | 3407314-T-C | ** | ||||||
3472069-C-A | 3604028-C-A | ** | ||||||
3545583-T-A | 3677542-T-A | ** | ||||||
3732191-T-C | 3864150-T-C | ** | ||||||
3889858-T-A | 4021817-T-A | ** | ||||||
3912861-A-T | 4044820-A-T | ** | ||||||
3926398-G-T | 4058357-G-T | ** | ||||||
4002423-A-C | 4134382-A-C | ** | ||||||
4222695-C-A | 4354654-C-A | ** | ||||||
4240363-T-C | 4372322-T-C | ** | ||||||
4287273-G-T | 4419232-G-T | ** | ||||||
4312616-T-A | 4444575-T-A | ** | ||||||
4559325-C-A | 4691284-C-A | ** | ||||||
4665917-A-G | 4797876-A-G | ** | ||||||
4725281-C-A | 4857240-C-A | ** | ||||||
4758044-A-G | 4890003-A-G | ** | ||||||
4882645-G-T | 5014604-G-T | ** | ||||||
4908086-G-T | 5040045-G-T | ** | ||||||
4928888-C-A | 5060847-C-A | ** | ||||||
5000329-C-G | 5132288-C-G | ** | ||||||
5052960-T-C | 5184919-T-C | ** | ||||||
5323199-G-T | 5455158-G-T | ** | ||||||
5396386-G-T | 5528345-G-T | FT323756 | ** | |||||
5422837-G-A | 5554796-G-A | ** | ||||||
5522578-T-C | 5654537-T-C | ** | ||||||
5872560-G-T | 6004519-G-T | ** | ||||||
5911157-C-T | 6043116-C-T | ** | ||||||
5999464-AT-A | 6131423-AT-A | ** | ||||||
6095148-TATTAGG-T | 6227107-TATTAGG-T | ** | ||||||
6359772-T-A | 6491731-T-A | ** | ||||||
6491404-C-T | 6623363-C-T | ** | ||||||
6642925-C-A | 6774884-C-A | ** | ||||||
6724296-T-G | 6856255-T-G | ** | ||||||
6765637-TCG-C | 6897596-TCG-C | ** | ||||||
7008693-T-A | 7140652-T-A | ** | ||||||
7017254-A-G | 7149213-A-G | ** | ||||||
7047927-T-A | 7179886-T-A | ** | ||||||
7052907-A-C | 7184866-A-C | ** | ||||||
7088114-A-T | 7220073-A-T | ** | ||||||
7255922-T-C | 7387881-T-C | ** | ||||||
7258602-A-G | 7390561-A-G | ** | ||||||
7259025-A-G | 7390984-A-G | ** | ||||||
7304623-A-C | 7436582-A-C | ** | ||||||
7314707-C-A | 7446666-C-A | ** | ||||||
7371568-C-A | 7503527-C-A | ** | ||||||
7418679-A-G | 7550638-A-G | ** | ||||||
7428022-C-A | 7559981-C-A | ** | ||||||
7541499-C-T | 7673458-C-T | ** | ||||||
7780674-C-T | 7912633-C-T | ** | ||||||
7824944-G-T | 7956903-G-T | ** | ||||||
7996299-C-A | 8128258-C-A | ** | ||||||
8080186-G-T | 8212145-G-T | ** | ||||||
8217826-T-C | 8349785-T-C | ** | ||||||
8232046-C-A | 8364005-C-A | ** | ||||||
8345950-T-G | 8477909-T-G | ** | ||||||
8732925-C-A | 8864884-C-A | ** | ||||||
8786773-CA-C | 8918732-CA-C | ** | ||||||
8811256-C-A | 8943215-C-A | ** | ||||||
9108090-A-ACG | ** | |||||||
9014323-G-T | 9176714-G-T | ** | ||||||
9074071-C-A | 9236462-C-A | ** | ||||||
9082312-T-C | 9244703-T-C | ** | ||||||
9577092-C-T | 9739483-C-T | IR3_Prx | ** | |||||
9891026-A-G | 10053417-A-G | ** | ||||||
9936303-C-A | 10098694-C-A | ** | ||||||
9966075-T-C | 10128466-T-C | ** | ||||||
10033142-GGGGGCTACC-G | 10195533-GGGGGCTACC-G | ** | ||||||
10679077-C-A | ** | |||||||
10749589-C-A | ** | |||||||
10750724-T-C | ** | |||||||
10769210-C-G | ** | |||||||
10784141-C-A | ** | |||||||
10786123-C-A | ** | |||||||
10787411-A-G | ** | |||||||
10795848-T-C | FT106502 | ** | ||||||
10820009-C-A | ** | |||||||
10825420-A-C | ** | |||||||
10837180-G-T | ** | |||||||
10845606-C-A | ** | |||||||
10855757-C-G | ** | |||||||
10884995-T-C | ** | |||||||
10946996-A-G | ** | |||||||
10947003-T-A | ** | |||||||
10950484-T-A | ** | |||||||
10950510-T-C | ** | |||||||
10967620-GATGTCAC-G | ** | |||||||
10968334-C-A | ** | |||||||
10976960-T-A | ** | |||||||
10985464-C-T | ** | |||||||
10987598-C-A | ** | |||||||
11000454-A-C | ** | |||||||
11017413-C-T | ** | |||||||
11031469-TC-T | ** | |||||||
13196128-C-A | 11040452-C-A | ** | ||||||
13198623-C-A | 11042947-C-A | ** | ||||||
13217342-G-C | 11061666-G-C | ** | ||||||
13248429-C-A | 11092753-C-A | ** | ||||||
13255560-C-A | 11099884-C-A | ** | ||||||
13321882-G-T | 11166206-G-T | ** | ||||||
13323458-C-A | 11167782-C-A | ** | ||||||
13702456-T-C | 11546780-T-C | ** | ||||||
11646746-TG-T | ** | |||||||
11650555-T-C | ** | |||||||
11652530-T-C | ** | |||||||
11663641-G-A | ** | |||||||
11665390-C-A | ** | |||||||
11667541-T-A | ** | |||||||
11672019-G-A | ** | |||||||
11673188-A-G | ** | |||||||
13803420-A-G | 11682714-A-G | ** | ||||||
13858800-G-A | 11738094-G-A | ** | ||||||
13969713-G-T | 11849007-G-T | ** | ||||||
14015364-GT-G | 11894658-GT-G | ** | ||||||
14046605-A-T | 11925899-A-T | ** | ||||||
14090716-C-A | 11970010-C-A | ** | ||||||
14198354-T-C | 12077648-T-C | ** | ||||||
14200482-C-T | 12079776-C-T | ** | ||||||
14200515-A-G | 12079809-A-G | ** | ||||||
14297276-C-G | 12176570-C-G | ** | ||||||
14412882-C-A | 12292179-C-A | ** | ||||||
14485305-A-G | 12364574-A-G | ** | ||||||
12375599-C-A | ** | |||||||
14520708-T-A | 12408909-T-A | ** | ||||||
14593672-A-C | 12481872-A-C | ** | ||||||
14593673-G-C | 12481873-G-C | ** | ||||||
14593678-A-C | 12481878-A-C | ** | ||||||
14593688-G-A | 12481888-G-A | ** | ||||||
14593695-A-C | 12481895-A-C | ** | ||||||
14593699-A-C | 12481899-A-C | ** | ||||||
14593701-G-A | 12481901-G-A | FT99812 | ** | |||||
14757398-A-T | 12645467-A-T | ** | ||||||
14778875-C-A | 12666945-C-A | ** | ||||||
14788072-C-T | 12676143-C-T | ** | ||||||
14871210-T-C | 12759280-T-C | ** | ||||||
15011589-A-G | 12899677-A-G | ** | ||||||
15034721-C-A | 12922809-C-A | ** | ||||||
15081123-C-A | 12969213-C-A | ** | ||||||
15113474-T-C | 13001561-T-C | ** | ||||||
15113707-A-G | 13001794-A-G | ** | ||||||
15334921-A-G | 13223039-A-G | ** | ||||||
15466195-C-A | 13354315-C-A | ** | ||||||
15469210-C-A | 13357330-C-A | ** | ||||||
15478861-C-A | 13366981-C-A | ** | ||||||
15478889-T-C | 13367009-T-C | ** | ||||||
15497950-T-A | 13386070-T-A | ** | ||||||
15532383-C-A | 13420503-C-A | ** | ||||||
15622344-A-C | 13510464-A-C | ** | ||||||
15688351-G-T | 13576471-G-T | ** | ||||||
15688993-C-A | 13577113-C-A | ** | ||||||
15937330-T-A | 13825450-T-A | ** | ||||||
16022730-A-C | 13910850-A-C | ** | ||||||
16084204-C-A | 13972324-C-A | ** | ||||||
16093911-A-T | 13982031-A-T | ** | ||||||
16342141-A-G | 14230261-A-G | ** | ||||||
16429130-T-A | 14317250-T-A | ** | ||||||
16618261-C-A | 14506381-C-A | ** | ||||||
16666135-G-T | 14554255-G-T | ** | ||||||
16678682-C-T | 14566802-C-T | ** | ||||||
16689844-C-A | 14577964-C-A | ** | ||||||
16786212-CCTTTT-C | 14674332-CCTTTT-C | ** | ||||||
17244343-G-C | 15132463-G-C | ** | ||||||
17367555-C-A | 15255675-C-A | ** | ||||||
17716951-C-A | 15605071-C-A | ** | ||||||
17863440-T-A | 15751560-T-A | ** | ||||||
18185616-A-G | 16073736-A-G | ** | ||||||
18190649-G-A | 16078769-G-A | ** | ||||||
18309140-A-T | 16197260-A-T | P6_Prx | ** | |||||
18471744-A-G | 16359864-A-G | P6_Dst | ** | |||||
18750163-T-C | 16638283-T-C | ** | ||||||
18793885-C-A | 16682005-C-A | ** | ||||||
19168465-G-A | 17056585-G-A | ** | ||||||
19206568-G-T | 17094688-G-T | ** | ||||||
19253412-G-T | 17141532-G-T | ** | ||||||
19340457-A-C | 17228577-A-C | ** | ||||||
19438571-A-G | 17326691-A-G | ** | ||||||
19531508-C-A | 17419628-C-A | ** | ||||||
19535505-C-A | 17423625-C-A | ** | ||||||
19558324-T-C | 17446444-T-C | ** | ||||||
19609505-T-G | 17497625-T-G | P5_Prx | ** | |||||
19622112-AC-A | 17510232-AC-A | P5_Prx | ** | |||||
19732402-C-A | 17620522-C-A | P5_Prx | ** | |||||
20027969-G-T | 17916089-G-T | P5_Prx | ** | |||||
21088702-T-C | 18926816-T-C | ** | ||||||
21334698-A-C | 19172812-A-C | ** | ||||||
21589561-T-A | 19427675-T-A | ** | ||||||
21786777-C-A | 19624891-C-A | ** | ||||||
21791462-G-T | 19629576-G-T | ** | ||||||
21875763-A-G | 19713877-A-G | ** | ||||||
21895490-G-T | 19733604-G-T | ** | ||||||
21895618-A-C | 19733732-A-C | ** | ||||||
21958422-C-A | 19796536-C-A | ** | ||||||
22166627-A-T | 20004741-A-T | ** | ||||||
22540548-A-G | 20378662-A-G | ** | ||||||
22621861-C-A | 20459975-C-A | ** | ||||||
22988576-C-A | 20826690-C-A | ** | ||||||
22988599-C-A | 20826713-C-A | ** | ||||||
23190396-C-A | 21028510-C-A | ** | ||||||
23363041-G-T | 21201155-G-T | ** | ||||||
23446879-A-G | 21284993-A-G | ** | ||||||
23446893-A-G | 21285007-A-G | ** | ||||||
21780535-T-C | ** | |||||||
24353296-C-T | 22207149-C-T | P3_t1 | ** | |||||
24403600-C-G | 22257453-C-G | ** | ||||||
26100546-GTGC-T | 23954399-GTGC-T | P1_Y1 | ** | |||||
27497027-A-G | 25350880-A-G | P1_Y2 | ** | |||||
27497091-A-T | 25350944-A-T | P1_Y2 | ** | |||||
27701892-G-A | 25555745-G-A | P1_Y2 | ** | |||||
27714346-G-A | 25568199-G-A | P1_Y2 | ** | |||||
28520291-C-A | 26374144-C-A | ** | ||||||
28599007-T-C | 26452860-T-C | ** | ||||||
28641171-G-A | 26495024-G-A | ** | ||||||
28715471-G-T | 26569324-G-T | ** | ||||||
28747608-T-A | 26601461-T-A | ** | ||||||
56836498-C-A | ** | |||||||
56842188-TG-T | ** | |||||||
56842204-A-AT | ** | |||||||
56861688-A-G | ** | |||||||
4270959-A-AAGATAGATAGATAGAT | 4402918-A-AAGATAGATAGATAGAT | 15×AGAT | *** | |||||
2798710-ATTTTT-A | 2930669-ATTTTT-A | 20×T | *** | |||||
11643762-T-A | *** | |||||||
28784449-T-A | 26638302-T-A | *** | ||||||
18688287-C-A | 16576407-C-A | *** | ||||||
21162824-C-A | 19000938-C-A | *** | ||||||
10935568-A-T | *** | |||||||
9847289-ATTTTTTTTTT-A | 10009680-ATTTTTTTTTT-A | 28×T | *** | |||||
13470413-C-T | 11314737-C-T | *** | ||||||
21287965-A-C | 19126079-A-C | *** | ||||||
28788055-A-G | 26641908-A-G | *** | ||||||
28788040-A-ATGGAG | 26641893-A-ATGGAG | *** | ||||||
10988545-C-A | *** | |||||||
23544818-C-T | 21382932-C-T | *** | ||||||
13489817-T-A | 11334141-T-A | *** | ||||||
13489833-A-T | 11334157-A-T | *** | ||||||
17781719-C-A | 15669839-C-A | *** | ||||||
17781637-C-A | 15669757-C-A | *** | ||||||
23270630-TAAA-T | 21108744-TAAA-T | 16×A | *** | |||||
10770634-T-A,G | *** | |||||||
11677401-C-A | *** | |||||||
56832534-G-A,T | *** | |||||||
10668327-C-A | *** | |||||||
6855339-CTT-C,CT | 6987298-CTT-C,CT | 15×T | *** | |||||
6368392-T-A | 6500351-T-A | *** | ||||||
18661631-AT-A | 16549751-AT-A | *** | ||||||
23138735-G-T | 20976849-G-T | *** | ||||||
19377038-C-A | 17265158-C-A | *** | ||||||
7866773-C-A | 7998732-C-A | *** | ||||||
4547821-C-A | 4679780-C-A | *** | ||||||
15396753-C-A | 13284873-C-A | *** | ||||||
10796346-C-A | *** | |||||||
13958561-C-A | 11837855-C-A | *** | ||||||
14376312-C-A | 12255608-C-A | *** | ||||||
19187385-ATTTTT-A,ATTT | 17075505-ATTTTT-A,ATTT | 28×T | *** | |||||
6150009-GTATATATATA-G,GTATATATA | 6281968-GTATATATATA-G,GTATATATA | IR3_Dst | 19×TA | *** | ||||
7780741-TAAA-T,TAA | 7912700-TAAA-T,TAA | 11×A | *** | |||||
8273005-C-A | 8404964-C-A | *** | ||||||
9047987-T-C | 9210378-T-C | *** | ||||||
9461712-C-T | 9624103-C-T | FTA26209 | *** | |||||
10968523-C-A | *** | |||||||
14232966-C-T | 12112260-C-T | *** | ||||||
14527424-CTCCCA-C | 12415625-CTCCCA-C | *** | ||||||
14986643-TCTCT-T,TCTCC | 12874711-TCTCT-T,TCTCC | *** | ||||||
16921834-A-G | 14809954-A-G | *** | ||||||
17086639-AT-A | 14974759-AT-A | *** | ||||||
17313285-G-A | 15201405-G-A | *** | ||||||
17409683-C-A | 15297803-C-A | *** | ||||||
17503943-G-T | 15392063-G-T | *** | ||||||
18693597-A-G | 16581717-A-G | *** | ||||||
19270517-C-A | 17158637-C-A | *** | ||||||
19414960-C-A | 17303080-C-A | *** | ||||||
19417200-A-G | 17305320-A-G | *** | ||||||
21182349-G-A | 19020463-G-A | *** | ||||||
22147410-C-T | 19985524-C-T | *** | ||||||
22669033-G-A | 20507147-G-A | *** | ||||||
23331166-C-A | 21169280-C-A | *** | ||||||
23528848-CTTTATTTA-C | 21366962-CTTTATTTA-C | 5×TTTA | *** | |||||
28593831-CA-C | 26447684-CA-C | *** |
In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.
For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.
The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.
The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.