Tree Position

R-P312/S116 > Z40481 > ZZ11 > U152/S28 > L2/S139 > DF110 > Y3964 > A1718

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19) POS-REF-ALT (hg38) Blocks Names Region McDonald BED combBED STRBigY2
843285
10834868-C-T A+
13694944-A-C 11539268-A-C A*
6388722-G-T 6520681-G-T A*
13698446-T-C 11542770-T-C A*
20668428-G-GT 18506542-G-GT P4_Prx A*
24270940-A-C 22124793-A-C P3_b1 A*
19793324-G-A 17681444-G-A P5_Prx A*
19595637-G-A 17483757-G-A P5_Prx YA*
18320151-C-A 16208271-C-A P6_Prx A*
13689781-G-C 11534105-G-C A*
28816564-G-T 26670417-G-T A*
13689901-G-A 11534225-G-A A*
28810633-A-T 26664486-A-T A*
28809816-A-T 26663669-A-T A*
28815580-C-T 26669433-C-T A*
2702786-C-A 2834745-C-A BY173383 YY+
22473944-T-A 20312058-T-A BY188404 DYZ19 +
22468038-G-T 20306152-G-T BY174777 DYZ19 +
22462159-T-G 20300273-T-G BY188387 DYZ19 +
13717129-A-T 11561453-A-T BY89699 +
22258039-T-G 20096153-T-G BY174720 DYZ19 +
21920914-C-G 19759028-C-G BY136455 YY+
21520073-G-T 19358187-G-T BY173393 YY+
21174719-C-G 19012833-C-G BY173392 YY+
14705859-G-A 12593925-G-A BY173387 YY+
14193713-G-A 12073007-G-A BY93715 YY+
13464707-C-T 11309031-C-T BY85697 +
18965671-G-A 16853791-G-A BY173391 YY+
14045031-G-A 11924325-G-A BY92584 YY+
4902752-C-G 5034711-C-G BY58417 +
15062767-G-A 12950859-G-A BY99507 YY+
18034755-C-T 15922875-C-T BY119339 YY+
17854259-C-G 15742379-C-G BY117847 YY+
15230480-G-C 13118566-G-C BY100329 Y+
22739108-T-A 20577222-T-A BY173388 YY+
17003809-C-T 14891929-C-T BY173386 YY+
16543854-T-G 14431974-T-G BY173385 YY+
13851339-AT-A 11730633-AT-A +
2815534-CT-C 2947493-CT-C +
13934607-G-A 11813901-G-A BY91954 Y+
15915221-G-A 13803341-G-A BY173390 YY+
15731809-T-C 13619929-T-C BY173382 YY+
22563150-G-A 20401264-G-A BY139053 YY+
16253767-T-C 14141887-T-C BY106392 YY+
22829730-C-T 20667844-C-T YY+
6739072-G-A 6871031-G-A BY60990 YY+
6933303-G-A 7065262-G-A Y82946 YY+
9851406-G-A 10013797-G-A BY81461 YY+
9005981-T-C 9168372-T-C BY173389 Y+
8803568-C-G 8935527-C-G BY173395 YY+
8285995-C-T 8417954-C-T BY71413 YY+
7964161-C-T 8096120-C-T BY69109 YY+
26044961-C-A 23898814-C-A BY174828 P1_Y1 +
7035265-G-C 7167224-G-C BY62944 YY+
22185757-C-G 20023871-C-G BY173394 YY+
23567328-A-G 21405442-A-G BY146353 YY+
23404409-A-C 21242523-A-C BY145062 YY+
23511715-G-A 21349829-G-A BY173384 YY+
23248332-C-G 21086446-C-G BY144076 YY+
23112040-C-T 20950154-C-T BY142964 YY+
22298578-G-C 20136692-G-C DYZ19 *
10008496-C-G 10170887-C-G BY188763 Y*
28810249-G-A 26664102-G-A *
19671570-C-T 17559690-C-T P5_Prx *
14073260-C-A 11952554-C-A **
10942554-T-A **
13857213-A-G 11736507-A-G FT12873 **
10844845-T-G **
13950208-G-T 11829502-G-T **
10841961-T-TTCTGA **
10829324-C-A **
10953869-C-T **
10841944-C-CAATTG **
10979796-T-C **
14080021-G-T 11959315-G-T **
10969161-C-A **
10820419-C-CA **
10810785-C-CACTA **
14283435-C-A 12162729-C-A **
14284111-A-C 12163405-A-C **
13800713-G-A 11680007-G-A **
10844849-A-C **
13743980-A-C 11588304-A-C **
13575446-C-A 11419770-C-A **
11010073-C-T **
13236157-G-A 11080481-G-A **
10938846-T-C **
11005522-C-CCAAT **
13257608-C-A 11101932-C-A **
13388502-G-T 11232826-G-T **
10936374-C-A **
13574263-G-T 11418587-G-T **
10936372-C-A **
13584134-C-A 11428458-C-A **
11008174-C-A **
10934301-C-A **
10930850-C-A **
13605648-G-A 11449972-G-A **
10889989-G-T **
10976831-T-C **
13618208-A-G 11462532-A-G **
10867593-C-A **
13631310-C-A 11475634-C-A **
10862309-C-A **
10874446-C-T **
13143116-C-T 10632602-C-T **
14366673-G-A 12245968-G-A **
25960760-A-AC 23814613-A-AC P1_Y1 **
22836757-G-T 20674871-G-T **
23037992-C-A 20876106-C-A **
23096955-G-A 20935069-G-A **
23261562-A-G 21099676-A-G **
23773737-C-A 21611851-C-A **
24241272-A-C 22095125-A-C P3_b1 **
24278325-AGGGAG-A 22132178-AGGGAG-A P3_b1 **
24278417-C-A 22132270-C-A P3_b1 **
24381242-A-T 22235095-A-T **
24414470-AT-A 22268323-AT-A 8×T**
24416262-GCGGGATTA-G 22270115-GCGGGATTA-G **
25160894-G-T 23014747-G-T g1 **
25960696-T-C 23814549-T-C P1_Y1 **
27038121-T-C 24891974-T-C P1_r4 **
22248422-T-A 20086536-T-A DYZ19 **
27540965-CAGCCAA-C 25394818-CAGCCAA-C P1_Y2 **
27603734-G-T 25457587-G-T P1_Y2 **
27987722-CAGGTCAATTG-C 25841575-CAGGTCAATTG-C P1_Y2 **
27997468-C-CAG 25851321-C-CAG P1_Y2 23×A**
28008179-T-C 25862032-T-C P1_Y2 **
28027983-T-G 25881836-T-G P1_Y2 **
28315888-C-A 26169741-C-A P1_b4 **
28315902-G-T 26169755-G-T P1_b4 **
28458275-A-G 26312128-A-G **
28591091-C-T 26444944-C-T **
56837862-G-T **
56845210-G-C **
56849092-T-C **
22292769-T-A 20130883-T-A DYZ19 **
21558740-G-T 19396854-G-T FT13856 **
14472861-C-A 12352130-C-A **
16489984-C-A 14378104-C-A **
14495701-A-T 12383898-A-T **
14539273-T-C 12427474-T-C **
14550261-A-G 12438462-A-G **
14764967-G-A 12653036-G-A **
14910977-T-G 12799044-T-G **
15168424-G-A 13056510-G-A **
15338792-G-A 13226910-G-A **
15647759-C-A 13535879-C-A **
15717781-A-G 13605901-A-G **
16047174-A-G 13935294-A-G **
16130404-G-GAGA 14018524-G-GAGA P8_Prx 15×A**
10760734-A-C **
16379154-T-C 14267274-T-C **
16700215-T-TCTTA 14588335-T-TCTTA **
21482739-TTTTC-T 19320853-TTTTC-T **
17048121-T-C 14936241-T-C **
17269790-C-A 15157910-C-A **
17545354-C-A 15433474-C-A **
17998087-G-A 15886207-G-A P7_Gap **
18401068-G-C 16289188-G-C P6_Gap **
18902953-G-A 16791073-G-A **
19436831-G-A 17324951-G-A **
19557054-C-A 17445174-C-A **
20241143-T-G 18079257-T-G P5_Dst **
20419137-GGGGGGT-G 18257251-GGGGGGT-G P5_Dst **
20585306-C-A 18423420-C-A P5_Dst **
20585433-A-C 18423547-A-C P5_Dst **
21267868-T-C 19105982-T-C **
21464393-A-C 19302507-A-C **
10775483-T-C **
10652810-A-T **
10760123-C-A **
10830922-C-T **
18812144-C-A 16700264-C-A **
18127964-T-G 16016084-T-G **
10911987-C-A **
23188877-C-A 21026991-C-A **
10830950-T-G **
10830924-TTCCAC-T **
10830915-T-C **
4443043-C-A 4575002-C-A **
21334753-C-A 19172867-C-A **
10658085-C-G **
7309950-C-A 7441909-C-A FT167323 **
14427406-TAA-T 12306681-TAA-T 12×A**
10773650-C-A **
10841954-C-G **
10844848-T-C **
10795061-C-T **
10883052-C-A **
14580924-G-A 12469124-G-A **
10836630-A-G **
4552660-G-T 4684619-G-T **
13981646-C-A 11860940-C-A **
22090037-C-A 19928151-C-A **
10755986-C-A **
6403690-G-T 6535649-G-T **
10842013-G-C **
58862985-A-T 56727886-T-A **
13460512-G-A 11304836-G-A **
10795051-G-C **
9514729-C-A 9677120-C-A **
28591085-C-G 26444938-C-G **
10944663-C-G **
27917408-C-A 25771261-C-A P1_Y2 **
10836634-C-A **
10777139-T-G **
19187446-CTTTTTTT-C 17075566-CTTTTTTT-C 34×T**
22804049-C-A 20642163-C-A **
10801533-A-C **
10750650-T-G **
10653737-C-T **
10653724-T-C **
13468190-A-C 11312514-A-C **
13722735-A-C 11567059-A-C **
10844869-A-C **
10801518-A-G **
10849742-G-A **
16102016-G-GT 13990136-G-GT P8_Prx **
22540513-C-A 20378627-C-A **
22292762-T-A 20130876-T-A DYZ19 **
22292755-T-C 20130869-T-C DYZ19 **
22292750-A-G 20130864-A-G DYZ19 **
17994759-A-G 15882879-A-G P7_Prx **
10849738-T-A **
10944638-A-T **
7031073-A-C 7163032-A-C **
7371151-C-A 7503110-C-A **
56875353-A-G **
6770828-C-A 6902787-C-A **
25617175-TTGTGTG-T 23471028-TTGTGTG-T P1_gr1 19×TG**
9198286-C-A 9360677-C-A **
9941285-C-A 10103676-C-A **
18892489-G-A 16780609-G-A **
10841953-C-G **
17115113-C-A 15003233-C-A **
10884051-C-A **
10653746-T-G **
10653740-T-A **
13255267-G-A 11099591-G-A **
10810751-T-C **
11021899-C-A **
15941429-C-A 13829549-C-A **
10964917-G-A **
16541116-C-A 14429236-C-A **
9022-A-C **
5084786-C-A 5216745-C-A **
6332697-C-CCA 6464656-C-CCA IR3_Dst **
5999486-G-A 6131445-G-A **
5717192-C-A 5849151-C-A **
5373898-A-G 5505857-A-G **
5166503-T-C 5298462-T-C **
5113424-A-G 5245383-A-G **
5084692-A-G 5216651-A-G **
6652532-CT-C 6784491-CT-C **
4993687-AT-A 5125646-AT-A **
4993176-G-T 5125135-G-T **
4938736-GT-G 5070695-GT-G **
4792924-C-A 4924883-C-A **
4429563-C-A 4561522-C-A **
4287218-T-G 4419177-T-G **
6486409-C-A 6618368-C-A **
6654209-C-A 6786168-C-A **
4213262-GC-G 4345221-GC-G **
7755338-A-C 7887297-A-C **
58908894-CCATTCCATTG-C 56681957-GAATGGAATGC-G **
9939173-G-T 10101564-G-T **
9887887-G-T 10050278-G-T **
8985151-A-C 9147542-A-C **
8731261-C-A 8863220-C-A **
7866019-A-C 7997978-A-C **
7755271-C-G 7887230-C-G **
6654545-C-T 6786504-C-T **
7444107-C-A 7576066-C-A **
7343565-C-T 7475524-C-T **
7296698-A-G 7428657-A-G **
7248487-G-A 7380446-G-A **
7084541-G-A 7216500-G-A **
6997949-T-A 7129908-T-A **
4224386-C-A 4356345-C-A **
4576140-C-A 4708099-C-A **
4199885-C-A 4331844-C-A **
56839994-G-T **
2758215-A-G 2890174-A-G **
10909600-G-T **
22269222-C-A 20107336-C-A DYZ19 **
10968772-T-G **
7282323-C-A 7414282-C-A **
4190813-G-T 4322772-G-T **
11669342-G-T **
10844850-T-C **
11673491-C-A **
22994833-C-A 20832947-C-A **
10773940-C-A FT91668 **
2665525-A-C 2797484-A-C **
2788310-G-A 2920269-G-A **
3127952-C-A 3259911-C-A **
3826771-G-T 3958730-G-T **
10841998-C-A **
4095609-G-A 4227568-G-A **
4015874-A-G 4147833-A-G **
9996186-C-A 10158577-C-A **
24295368-C-CAA 22149221-C-CAA P3_t1 **
3937414-C-A 4069373-C-A **
10831311-C-A ***
13465471-G-A 11309795-G-A ***
13453379-CACTCGGGTTG-C 11297703-CACTCGGGTTG-C ***
10850487-C-A ***
13488681-A-G,T 11333005-A-G,T ***
10986663-N-C,G ***
56834632-T-A,G ***
10672016-C-A ***
10803978-C-A ***
10859392-G-C ***
10692105-C-A ***
6642304-ACCTAGGTATCAGC-A 6774263-ACCTAGGTATCAGC-A ***
18186133-AGGC-A 16074253-AGGC-A ***
10986668-N-C,G ***
22171165-A-G 20009279-A-G ***
13859413-TG-T 11738707-TG-T ***
5966000-C-A 6097959-C-A ***
21558739-G-A 19396853-G-A ***
22300107-A-G 20138221-A-G DYZ19 ***
10986662-N-A,T ***
10986655-N-C,G ***
10986671-N-A,C ***
5204632-C-A 5336591-C-A ***
13465484-G-A 11309808-G-A ***
11020152-T-A,G ***
23194817-CTTT-C,CT 21032931-CTTT-C,CT 24×T***
10805638-G-T ***
14252438-T-C 12131732-T-C ***
11002026-T-A ***
18401482-A-G 16289602-A-G P6_Gap ***
15898862-G-T 13786982-G-T ***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.

Age Analysis Information (work in progress)

AllMcDonaldYFull
Kit: 843285987617780160817882037
Used in age calculations987617780160817882037
Counts of SNPs3633
Variant counts last updated 2019-11-11 02:46:10.



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