Tree Position

R-P312/S116 > Z290 > L21/S145 > DF13 > DF21/S192 > Z30233 > FGC3903/S5201 > S5199 > Z246 > DF25 > DF5 > ZZ32 > CTS3655 > Z16539 > Z16540 > Z29571

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19) POS-REF-ALT (hg38) Blocks Names Region McDonald BED combBED STRBigY2
655498
6260324-C-T 6392283-C-T IR3_Dst A*
6311907-A-G 6443866-A-G IR3_Dst A*
19575893-T-C 17464013-T-C BY211839 P5_Prx Y19×TCA*
20015415-T-C 17903535-T-C P5_Prx A*
19856711-G-A 17744831-G-A P5_Prx A*
16889258-A-G 14777378-A-G BY110853 YY+
7387802-G-C 7519761-G-C BY173118 YY+
22465991-A-T 20304105-A-T BY221644 DYZ19 +
6720232-A-G 6852191-A-G BY60922 YY+
6854369-A-T 6986328-A-T BY61718 YY+
18545464-G-T 16433584-G-T BY173119 Y+
18005811-C-T 15893931-C-T P7_Gap Y+
7606591-C-T 7738550-C-T BY66236 YY+
23757621-G-A 21595735-G-A BY147454 Y+
7676329-A-G 7808288-A-G BY66758 YY+
28795862-A-T 26649715-A-T BY151519 +
7730384-C-T 7862343-C-T BY174701 YY+
8469711-G-C 8601670-G-C BY73097 YY+
16200500-A-G 14088620-A-G BY105958 YY+
21373965-C-T 19212079-C-T BY132435 YY+
9642735-G-A 9805126-G-A BY80308 IR3_Prx +
14578580-G-A 12466780-G-A BY96560 YY+
13983827-C-A 11863121-C-A BY92082 Y+
22524976-C-T 20363090-C-T BY138731 Y+
8393533-A-AAAAC 8525492-A-AAAAC 9×AAAC*
4917616-TTC-T 5049575-TTC-T **
10779428-C-A **
10793179-C-G **
10793169-C-G **
10786135-G-C **
10786116-T-A **
13461123-T-C 11305447-T-C **
10781670-C-T **
10780508-C-A **
10780502-C-G **
10779466-G-T **
10779437-A-C **
2719020-G-C 2850979-G-C **
10796528-C-A **
10758326-C-A **
10756133-A-C **
10689959-T-C **
10689024-ATT-A **
10686879-A-G **
10671881-G-T **
10667269-A-C **
10664521-C-A **
10662956-A-C **
10659801-C-A **
10795893-T-TTTCTTTACAG **
10796547-A-C **
10633245-C-A **
10887410-T-C **
10930460-C-A **
10929157-C-A **
10915024-G-A **
10912143-A-G **
10906978-A-G **
10906073-A-C **
10902705-C-A **
10900923-A-T **
10898280-C-A **
10893079-C-A **
10877312-G-T **
10802858-T-G **
10861901-A-C **
10860213-T-A **
10852155-G-T **
10834027-CA-T **
10834022-C-CT **
10827131-T-G **
10825236-AT-A **
10813037-TG-T **
10809364-A-C **
10809344-A-AATCTG **
10656984-C-T **
10633241-C-A **
4777143-G-T 4909102-G-T **
5999504-C-A 6131463-C-A **
7021718-T-G 7153677-T-G **
3882676-T-G 4014635-T-G **
6756040-T-C 6887999-T-C **
4095989-C-A 4227948-C-A **
4108785-T-G 4240744-T-G **
4108797-A-C 4240756-A-C **
6576554-C-A 6708513-C-A **
6423818-C-A 6555777-C-A **
4198449-T-G 4330408-T-G **
4375194-C-CT 4507153-C-CT 8×T**
5809042-G-T 5941001-G-T **
7086784-TCCTA-T 7218743-TCCTA-T **
5724885-ATGGTACTTTTTATGATT-A 5856844-ATGGTACTTTTTATGATT-A **
5718067-C-A 5850026-C-A **
5674630-C-A 5806589-C-A **
5527900-G-T 5659859-G-T **
5519969-C-A 5651928-C-A **
5093303-C-A 5225262-C-A **
4997837-C-A 5129796-C-A **
4702658-A-G 4834617-A-G **
4717658-G-T 4849617-G-T **
4930566-C-T 5062525-C-T **
7021722-T-G 7153681-T-G **
7099124-T-G 7231083-T-G **
10633196-T-C **
10959917-T-G **
10633191-C-G **
9820597-C-A 9982988-C-A **
9689099-G-T 9851490-G-T IR3_Prx **
13856408-G-T 11735702-G-T **
2790144-C-A 2922103-C-A **
9371446-A-T 9533837-A-T **
2791025-A-C 2922984-A-C **
8379562-T-G 8511521-T-G **
8110954-T-G 8242913-T-G **
8076727-TA-T 8208686-TA-T **
7897617-G-T 8029576-G-T **
3882653-A-C 4014612-A-C **
2791058-A-C 2923017-A-C **
3179056-A-C 3311015-A-C **
7629928-C-A 7761887-C-A **
3244137-C-A 3376096-C-A **
3332463-T-A 3464422-T-A **
7369188-A-C 7501147-A-C **
3726533-T-A 3858492-T-A **
7233021-G-T 7364980-G-T **
7111651-C-A 7243610-C-A **
7110624-G-A 7242583-G-A **
10951569-A-T **
10995855-C-CTTTCCA **
10964821-G-A **
19053340-A-C 16941460-A-C **
22075937-GAAGTATGTTTAC-G 19914051-GAAGTATGTTTAC-G **
21238262-A-C 19076376-A-C **
20998324-AAAAAG-A 18836438-AAAAAG-A P4_Dst **
20850565-C-G 18688679-C-G P4_Dst **
20795938-A-C 18634052-A-C P4_Prx **
20640932-A-AC 18479046-A-AC P4_Prx **
20593145-C-T 18431259-C-T P5_Dst **
19846696-G-A 17734816-G-A P5_Prx **
19677687-T-G 17565807-T-G P5_Prx **
19673258-A-C 17561378-A-C P5_Prx **
19146548-A-T 17034668-A-T **
19009361-GA-G 16897481-GA-G **
22167218-A-C 20005332-A-C **
18520578-G-T 16408698-G-T P6_Dst **
18370553-T-G 16258673-T-G P6_Prx **
18188382-A-G 16076502-A-G **
18001333-A-C 15889453-A-C P7_Gap **
17589182-G-T 15477302-G-T **
17512484-G-T 15400604-G-T **
17407629-T-C 15295749-T-C **
17349254-C-T 15237374-C-T **
17349243-G-T 15237363-G-T **
17164901-C-A 15053021-C-A **
16623523-T-G 14511643-T-G **
22167214-A-G 20005328-A-G **
22170565-A-G 20008679-A-G **
16620329-A-G 14508449-A-G **
27540940-ACACAC-A 25394793-ACACAC-A P1_Y2 **
56863301-A-T **
56850360-T-A **
56841559-A-C **
56824000-A-C **
28814958-G-T 26668811-G-T **
28806363-A-G 26660216-A-G **
28737085-C-A 26590938-C-A **
28724302-A-C 26578155-A-C **
28681099-C-A 26534952-C-A **
28489663-T-A 26343516-T-A **
28486124-A-C 26339977-A-C **
25957703-G-T 23811556-G-T P1_Y1 **
22241555-A-G 20079669-A-G DYZ19 **
24878440-G-T 22732293-G-T g1 **
24579810-G-GTT 22433663-G-GTT P3_t2 **
24579808-T-TG 22433661-T-TG P3_t2 **
24579791-GGCAC-G 22433644-GGCAC-G P3_t2 **
24575872-A-C 22429725-A-C P3_t2 **
24295870-T-A 22149723-T-A P3_t1 **
24269645-A-G 22123498-A-G P3_b1 **
24021350-C-G 21875203-C-G **
23050404-C-A 20888518-C-A **
22446108-G-T 20284222-G-T DYZ19 **
22304756-T-G 20142870-T-G DYZ19 **
22241578-A-T 20079692-A-T DYZ19 **
16623513-A-C 14511633-A-C **
16318059-C-A 14206179-C-A **
10972115-GT-G **
11032363-C-A **
13748267-C-G 11592591-C-G **
13748256-A-G 11592580-A-G **
13724734-A-G 11569058-A-G **
13710144-A-T 11554468-A-T **
13710108-G-T 11554432-G-T **
13701843-G-T 11546167-G-T **
13632924-C-T 11477248-C-T **
13508994-T-C 11353318-T-C **
13491742-A-C 11336066-A-C **
13461110-A-G 11305434-A-G **
11032528-G-A **
11030442-G-A **
11652487-A-C **
11030310-C-A **
11009566-T-C **
11009560-T-C **
11007460-T-G **
11007450-T-A **
11004627-C-A **
10657012-G-T **
10995189-G-T **
10992477-G-A **
10977567-C-A **
10974928-A-T **
10974921-C-G **
13748270-A-T 11592594-A-T **
11658350-A-G **
16273200-G-T 14161320-G-T **
14793300-C-A 12681371-C-A **
16115519-A-ATTCT 14003639-A-ATTCT P8_Prx 22×T**
16096476-G-T 13984596-G-T **
16037279-C-A 13925399-C-A **
15889804-T-G 13777924-T-G **
15863093-G-C 13751213-G-C **
15863090-G-A 13751210-G-A **
15792951-A-C 13681071-A-C **
15788188-C-A 13676308-C-A **
15290144-G-A 13178243-G-A **
15172676-G-T 13060762-G-T **
15115343-C-A 13003430-C-A **
14786505-C-G 12674575-C-G **
11663939-G-T **
14784978-T-G 12673048-T-G **
14724752-C-A 12612820-C-A **
14623495-G-A 12511693-G-A **
14623469-G-A 12511667-G-A **
14623462-A-T 12511660-A-T **
14485836-T-G 12365105-T-G **
14485820-T-G 12365089-T-G **
14447260-C-A 12326533-C-A **
14284685-A-T 12163979-A-T **
14075687-C-A 11954981-C-A **
14023170-C-A 11902464-C-A **
13931955-G-C 11811249-G-C **
56728165-A-T **
2719060-A-ATT 2851019-A-ATT **
17375293-G-T 15263413-G-T **
56848766-G-A **
10912679-C-A **
10912661-G-T **
10912648-T-A **
10912623-G-A **
10834099-C-T **
10834097-G-T **
10834078-G-A **
10834064-C-CT **
15698547-C-A 13586667-C-A **
10892474-T-A **
24631267-TG-T 22485120-TG-T P3_t2 **
10776487-T-C **
10912697-C-T **
10668219-T-A **
11012425-C-A **
11025247-C-T **
5585942-C-A 5717901-C-A **
10961305-C-A **
10961302-A-G **
10961284-T-C **
10961248-T-C **
10961245-G-A **
10955716-G-T **
19272142-C-CAA 17160262-C-CAA 18×A**
10964819-C-A **
10912692-T-C **
10912717-T-C **
11029705-C-A **
10780532-A-T **
20771714-G-GAAA 18609828-G-GAAA P4_Prx 25×A**
10834052-C-T **
10974925-C-T **
8112507-T-G 8244466-T-G **
10990142-T-C **
5949372-CA-C 6081331-CA-C 8×A**
10834047-T-A **
10834041-A-T **
9689078-G-GTTTT 9851469-G-GTTTT IR3_Prx 15×T**
26124482-AG-A 23978335-AG-A P1_Y1 **
26250742-A-C 24104595-A-C P1_Y1 **
17349241-G-A 15237361-G-A **
15918567-T-G 13806687-T-G **
2719025-C-T 2850984-C-T **
14490351-C-A 12369620-C-A **
10963681-T-C **
10963676-C-T **
10961369-T-A **
28091448-G-T 25945301-G-T P1_Y2 **
13931960-A-G 11811254-A-G **
16581-G-T **
5179543-C-T 5311502-C-T **
10761148-C-T **
10761121-T-G **
28818215-T-A 26672068-T-A **
10929057-G-C **
10961304-A-T **
10990495-G-C **
10892480-C-T **
10924319-C-T **
10656978-C-G **
10761150-T-C **
28773882-C-A 26627735-C-A **
9184119-C-A 9346510-C-A **
10834037-G-T **
10770217-A-T **
10990152-A-C **
27971758-C-A 25825611-C-A P1_Y2 **
13468213-C-T 11312537-C-T **
10892483-T-C **
10813016-C-T **
13705523-A-C 11549847-A-C **
13701818-G-T 11546142-G-T **
7107084-A-AT 7239043-A-AT 14×T**
13493852-GTTATT-G 11338176-GTTATT-G 7×TTATT**
26054354-C-A 23908207-C-A P1_Y1 **
13724736-T-C 11569060-T-C **
13724703-G-T 11569027-G-T **
13724702-G-T 11569026-G-T **
13724684-A-G 11569008-A-G **
26500451-A-AAC 24354304-A-AAC P1_Y1 23×AC**
58996493-C-T 56850346-C-T **
13461116-G-T 11305440-G-T **
58905230-T-G 56685641-A-C **
10924324-T-C **
10924321-C-T **
10961273-G-T **
10861850-C-CAGTCT **
14623482-T-C 12511680-T-C **
14623455-C-T 12511653-C-T **
3732051-C-A 3864010-C-A **
13468255-C-T 11312579-C-T **
14715702-G-T 12603769-G-T **
17375245-G-T 15263365-G-T **
13710118-G-T 11554442-G-T **
19827565-C-A 17715685-C-A P5_Prx **
13718511-A-T 11562835-A-T **
24409177-G-T 22263030-G-T **
10866044-T-A **
10796516-A-C **
10782731-C-T **
20725923-G-T 18564037-G-T P4_Prx **
10940950-C-G **
10940948-T-C **
56698576-T-C **
10656996-C-A **
10656995-G-A **
10656994-T-C **
10656987-C-G **
10656972-C-G **
10809315-A-C **
13461069-G-C 11305393-G-C **
19415422-C-A 17303542-C-A **
10990482-G-A **
15220992-C-A 13109078-C-A **
10990506-A-C **
28803683-A-T 26657536-A-T **
14909620-C-A 12797687-C-A **
10847030-T-C **
10633225-C-A **
13321877-G-A 11166201-G-A **
15653558-C-A 13541678-C-A **
10809335-T-C **
14030153-C-A 11909447-C-A **
28549288-G-T 26403141-G-T **
22517592-G-GA 20355706-G-GA 9×A**
24579803-T-G 22433656-T-G P3_t2 **
13718505-C-G 11562829-C-G **
15363916-C-T 13252036-C-T **
3158812-A-T 3290771-A-T **
10861892-G-C **
17032542-C-A 14920662-C-A **
28724343-AT-A 26578196-AT-A **
28773919-C-A 26627772-C-A **
22241532-A-C 20079646-A-C DYZ19 **
10781211-T-A **
22502916-G-C 20341030-G-C DYZ19 **
10955290-C-A **
10779436-A-T **
10990512-T-C **
8333632-T-A 8465591-T-A **
28791335-A-T 26645188-A-T **
10812990-T-A **
11668519-C-A **
10874810-A-C **
10983827-C-A **
10761154-A-G **
10834859-T-A **
10796546-C-T **
5987644-C-A 6119603-C-A **
21766274-A-AACAC **
6930730-T-G 7062689-T-G **
21134961-G-A 18973075-G-A **
6130165-C-A 6262124-C-A **
11031226-TACTCC-T **
11025231-T-C **
10834872-G-T **
10940932-A-ATGCCC **
26067928-A-C 23921781-A-C P1_Y1 **
28006373-T-TAA 25860226-T-TAA P1_Y2 16×AC**
23007855-G-T 20845969-G-T **
10943306-C-A **
16474837-C-A 14362957-C-A **
15863083-G-A 13751203-G-A **
14196313-C-A 12075607-C-A **
19817559-A-C 17705679-A-C P5_Prx **
18382120-C-A 16270240-C-A P6_Gap **
5650661-C-A 5782620-C-A **
10648154-C-A **
7086833-G-A 7218792-G-A **
56850387-C-A **
22446102-C-A 20284216-C-A DYZ19 **
6347872-G-T 6479831-G-T **
10664069-C-A **
56840528-G-T **
5022281-C-A 5154240-C-A **
56870025-C-A **
28814951-G-T 26668804-G-T **
14339152-A-C 12218447-A-C **
5923778-C-A 6055737-C-A **
14273987-G-A 12153281-G-A **
10809317-T-C **
10898337-C-G **
10809022-G-A **
14420185-C-A 12299460-C-A **
10801542-C-G **
4301942-C-A 4433901-C-A **
21141285-C-A 18979399-C-A **
28091457-C-CAT 25945310-C-CAT P1_Y2 **
16272025-C-A 14160145-C-A **
26153567-T-TG 24007420-T-TG P1_Y1 **
10796132-C-A **
27155004-G-T 25008857-G-T P1_g3 **
27154995-C-A 25008848-C-A P1_g3 **
26124493-G-A 23978346-G-A P1_Y1 **
10793177-T-A **
13253188-T-C 11097512-T-C **
9371440-G-T 9533831-G-T **
10678506-G-T **
10974929-C-T **
10990520-T-C **
21852353-C-A 19690467-C-A **
11664634-C-A **
24295366-C-CAA 22149219-C-CAA P3_t1 **
21836368-C-A 19674482-C-A **
10834842-A-T **
10836855-T-G **
10778064-G-T **
7131384-A-C 7263343-A-C **
10775473-C-T **
14623443-A-G 12511641-A-G **
14623451-G-A 12511649-G-A **
14623458-A-G 12511656-A-G **
14823386-GT-G,GTT 12711453-GT-G,GTT 12×T***
10959279-C-A ***
13480936-C-A 11325260-C-A ***
4107979-T-C 4239938-T-C ***
14701045-A-C 12589111-A-C ***
19436734-AAGAA-A,AAGAG 17324854-AAGAA-A,AAGAG ***
10763101-CAATCCATT-C,CAATCCAAT ***
10959275-A-G ***
11004421-A-AC ***
13489011-CAT-C,CAC 11333335-CAT-C,CAC ***
11004419-C-CTATT ***
13456837-T-C 11301161-T-C BY85474 7×ATTCC***
21086136-TAAAAA-T 18924250-TAAAAA-T 24×A***
10914768-T-G ***
7861435-C-A 7993394-C-A ***
10883656-C-T ***
10660820-C-A ***
10813187-T-C ***
7041826-C-A 7173785-C-A ***
13487712-G-A,T 11332036-G-A,T ***
10671488-A-AAT,T ***
10866055-T-C ***
9076777-G-T 9239168-G-T ***
11643726-T-TACAGAA ***
13838421-AGAATGGAATGGAATGGAATGGAATGGAATG-A 11717715-AGAATGGAATGGAATGGAATGGAATGGAATG-A 9×GAATG***
9942960-C-A 10105351-C-A ***
10691219-T-C ***
22480647-T-A 20318761-T-A DYZ19 ***
10744978-C-A ***
13468312-C-T 11312636-C-T ***
10959290-A-G ***
2903232-CTCCTTCCTTCCT-C,CTCCT 3035191-CTCCTTCCTTCCT-C,CTCCT 18×TCCT***
10800359-G-A ***
11643721-AT-A ***
10956531-T-C ***
11031393-TC-T ***
11031390-C-CG ***
10934880-T-C ***
11654138-C-A ***
23184986-T-C 21023100-T-C ***
28711545-GGTGTGT-G 26565398-GGTGTGT-G 21×GT***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.

Age Analysis Information (work in progress)

AllMcDonaldYFull
Kit: 6554981002615681188807981851
Used in age calculations1002615681188807981851
Counts of SNPs1612
Variant counts last updated 2019-04-19 15:43:33.



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