Tree Position

R-P312/S116 > Z290 > L21/S145 > S552 > DF13

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19) POS-REF-ALT (hg38) Blocks Names Region McDonald BED combBED STRBigY2
848274
20695479-A-AAAAC 18533593-A-AAAAC P4_Prx 7×AAACA*
6240771-G-T 6372730-G-T IR3_Dst A*
22253468-A-C 20091582-A-C DYZ19 A*
25955840-T-C 23809693-T-C P1_Y1 A*
17905236-AT-A 15793356-AT-A 10×T+
18979731-C-T 16867851-C-T Z4394 M2976 YY+
22271983-G-T 20110097-G-T Z14292 DYZ19 +
22107465-C-T 19945579-C-T BY34834 Y133597 YY+
2742099-C-A 2874058-C-A BY173466 YY+
2888956-G-C 3020915-G-C YY+
6136020-C-T 6267979-C-T BY59164 +
7671765-G-C 7803724-G-C BY173458 YY+
8208896-G-A 8340855-G-A BY173457 YY+
9126793-G-A BY173456 +
13828711-C-A 11708005-C-A BY173467 +
15111999-C-T 13000086-C-T BY173455 YY+
15130579-C-T 13018666-C-T BY173454 YY+
15498484-TTTTGGTGCTAAAACTAATTCTAGTTTAGAATTAG-T 13386604-TTTTGGTGCTAAAACTAATTCTAGTTTAGAATTAG-T +
16200564-G-T 14088684-G-T BY173464 YY+
16230585-T-A 14118705-T-A BY173460 YY+
17470138-A-G 15358258-A-G BY173465 YY+
18040353-T-C 15928473-T-C BY173461 YY+
18700684-C-T 16588804-C-T BY173452 YY+
18886982-C-T 16775102-C-T BY27385 YY+
21516528-A-G 19354642-A-G BY173463 YY+
21992312-A-AT 19830426-A-AT +
22186980-C-T 20025094-C-T BY173453 YY+
22439944-T-A 20278058-T-A BY218706 DYZ19 +
22440974-G-A 20279088-G-A BY218945 DYZ19 +
22477394-C-T 20315508-C-T BY223795 DYZ19 +
22578505-G-C 20416619-G-C BY173462 YY+
22755419-G-A 20593533-G-A BY173459 YY+
23209-T-C +
27785-C-A +
15155424-T-TA 13043511-T-TA 9×A*
6135260-A-AGGCGT 6267219-A-AGGCGT *
9149748-G-C 9312139-G-C Y*
13712538-G-T 11556862-G-T *
22257756-C-A 20095870-C-A DYZ19 *
22281434-C-T 20119548-C-T BY216030 DYZ19 *
13648767-C-A 11493091-C-A S7180A9847 **
22520822-G-A 20358936-G-A FT177462 **
28763141-C-A 26616994-C-A **
22460223-A-G 20298337-A-G DYZ19 **
10025889-G-A 10188280-G-A BY83136 **
10671026-C-A **
18873433-C-A 16761553-C-A **
21895579-C-A 19733693-C-A **
22010233-C-A 19848347-C-A **
8481937-C-A 8613896-C-A **
7428332-C-A 7560291-C-A **
7643196-C-A 7775155-C-A **
10657275-C-A **
13487779-G-T 11332103-G-T **
13487784-G-T 11332108-G-T **
13487792-T-G 11332116-T-G **
13487800-G-T 11332124-G-T **
18425203-C-A 16313323-C-A P6_Gap **
20470189-G-T 18308303-G-T P5_Dst **
7243794-C-A 7375753-C-A **
36475-G-A **
2839939-C-A 2971898-C-A **
9426832-C-A 9589223-C-A **
22010258-C-A 19848372-C-A **
17480223-C-A 15368343-C-A **
8093500-C-A 8225459-C-A **
10673910-T-G **
17918776-C-A 15806896-C-A **
24971082-CTTT-C 22824935-CTTT-C g1 14×T**
8481049-TA-T 8613008-TA-T **
4969245-C-A 5101204-C-A **
16093902-C-A 13982022-C-A **
7105163-C-A 7237122-C-A **
19853777-G-T 17741897-G-T P5_Prx **
7626255-C-A 7758214-C-A **
25524727-GA-G 23378580-GA-G P1_gr1 **
22115561-A-C 19953675-A-C **
18856364-C-A 16744484-C-A **
14639564-C-A 12527633-C-A **
5449875-G-T 5581834-G-T **
20995552-CT-C 18833666-CT-C P4_Dst **
17064744-C-A 14952864-C-A Y17402 ZS6992 **
28570365-G-GA 26424218-G-GA 8×A**
27862535-TGAGAGAGAGAGAGAGA-T 25716388-TGAGAGAGAGAGAGAGA-T P1_Y2 22×GA**
28594145-C-CT 26447998-C-CT 8×T**
14425959-C-A 12305234-C-A **
16258978-C-A 14147098-C-A **
3627452-C-A 3759411-C-A **
56833326-C-A **
13472127-G-C 11316451-G-C **
7140936-C-A 7272895-C-A **
23475756-T-C 21313870-T-C **
15653254-C-A 13541374-C-A **
22537315-C-A 20375429-C-A **
17181528-C-A 15069648-C-A **
4898203-C-A 5030162-C-A **
16636930-C-A 14525050-C-A **
10051471-C-A 10213862-C-A **
16874737-GA-G 14762857-GA-G **
13456259-A-ATTCC 11300583-A-ATTCC **
10684490-G-T **
24402857-C-A 22256710-C-A **
16488967-C-A 14377087-C-A **
20943480-TG-T 18781594-TG-T P4_Dst **
8865834-C-A 8997793-C-A **
18354232-GAAAGGAAA-G 16242352-GAAAGGAAA-G P6_Prx **
14079510-C-A 11958804-C-A **
6693149-C-A 6825108-C-A **
4957900-G-T 5089859-G-T **
13197124-C-A 11041448-C-A **
10975153-C-A **
17576096-C-A 15464216-C-A **
5965630-C-A 6097589-C-A **
14697100-C-A 12585166-C-A **
10673894-A-AGTTGT **
11643697-T-G **
20667084-T-A 18505198-T-A P4_Prx **
56734777-G-C **
7148039-G-T 7279998-G-T **
16571942-C-A 14460062-C-A **
4070120-C-A 4202079-C-A **
9493713-C-A 9656104-C-A **
58979500-C-A 56833353-C-A **
5264274-C-A 5396233-C-A **
21651606-C-A 19489720-C-A **
7313036-C-A 7444995-C-A **
2909727-A-T 3041686-A-T **
2909734-A-G 3041693-A-G **
13202437-C-A 11046761-C-A **
16770527-C-A 14658647-C-A **
2666492-C-A 2798451-C-A FTA22550 **
2683987-C-A 2815946-C-A **
2744667-C-A 2876626-C-A **
2794396-A-T 2926355-A-T FT178598 **
2909687-A-G 3041646-A-G **
2909735-A-G 3041694-A-G **
2980811-GCA-G 3112770-GCA-G **
3343751-C-A 3475710-C-A **
3367035-A-T 3498994-A-T **
4540299-C-A 4672258-C-A **
4700704-T-C 4832663-T-C **
4887968-T-C 5019927-T-C **
4898329-G-T 5030288-G-T **
5212261-C-A 5344220-C-A **
5454754-T-G 5586713-T-G **
5818389-A-C 5950348-A-C **
5965808-T-C 6097767-T-C **
6098220-G-T 6230179-G-T **
6646900-C-T 6778859-C-T FTB62613 **
6922342-C-A 7054301-C-A **
7008646-C-A 7140605-C-A **
7017204-C-A 7149163-C-A **
7017270-G-A 7149229-G-A **
7123665-G-A 7255624-G-A **
7143506-C-A 7275465-C-A **
7199816-G-A 7331775-G-A **
7229241-A-G 7361200-A-G **
7231690-C-A 7363649-C-A **
7236980-C-A 7368939-C-A **
7448030-G-A 7579989-G-A IR1_L **
7487096-G-A 7619055-G-A IR1_L **
7615176-T-A 7747135-T-A **
7652228-C-A 7784187-C-A **
7776499-G-T 7908458-G-T **
7829743-C-A 7961702-C-A **
7983171-C-T 8115130-C-T **
8385391-A-G 8517350-A-G **
8437601-C-G 8569560-C-G **
9025546-C-A 9187937-C-A **
9041139-C-A 9203530-C-A **
9047586-C-T 9209977-C-T **
9643045-C-A 9805436-C-A IR3_Prx **
9839401-C-A 10001792-C-A **
9942233-A-AT 10104624-A-AT **
10617781-T-A FTB16938 **
10686592-A-T **
10960447-C-A **
13202848-C-A 11047172-C-A **
13209276-T-G 11053600-T-G **
13209317-T-G 11053641-T-G **
13218526-C-A 11062850-C-A **
13219943-G-A 11064267-G-A **
13219948-C-T 11064272-C-T **
13453149-C-CATTTTACTTGTGTGG 11297473-C-CATTTTACTTGTGTGG **
13453214-C-T 11297538-C-T **
13473316-C-G 11317640-C-G **
13479470-G-A 11323794-G-A **
13627117-A-C 11471441-A-C **
13710945-C-A 11555269-C-A **
11677469-A-T **
13815442-G-A 11694736-G-A FT22361 **
13934414-C-A 11813708-C-A **
13936581-G-A 11815875-G-A **
14052026-A-C 11931320-A-C **
14248419-C-A 12127713-C-A **
14320837-C-A 12200131-C-A **
14519653-C-G 12407854-C-G **
14600435-C-A 12488635-C-A **
14614105-C-A 12502303-C-A **
14653118-G-A 12541183-G-A **
14727393-C-A 12615461-C-A **
14993784-C-A 12881869-C-A **
15205961-A-G 13094047-A-G **
15286614-G-T 13174713-G-T **
15564043-G-A 13452163-G-A **
15605752-C-T 13493872-C-T **
15662694-G-C 13550814-G-C **
15749378-G-T 13637498-G-T **
15815242-C-A 13703362-C-A **
15909570-A-T 13797690-A-T **
15975709-C-A 13863829-C-A **
16034186-C-A 13922306-C-A **
16041898-A-G 13930018-A-G **
16054279-C-A 13942399-C-A **
16544487-T-G 14432607-T-G **
16656242-T-C 14544362-T-C **
16961233-G-A 14849353-G-A **
17020694-C-CA 14908814-C-CA **
17183430-A-T 15071550-A-T **
17188253-C-A 15076373-C-A **
17222739-C-A 15110859-C-A **
17251766-C-A 15139886-C-A **
17255266-C-A 15143386-C-A **
17369160-A-G 15257280-A-G **
17470725-C-A 15358845-C-A **
17474657-C-A 15362777-C-A **
17515323-C-A 15403443-C-A **
17631079-C-A 15519199-C-A **
17737662-C-T 15625782-C-T **
17978323-T-G 15866443-T-G **
17985147-C-A 15873267-C-A **
18071440-A-G 15959560-A-G **
18184918-C-T 16073038-C-T **
18232430-C-T 16120550-C-T BY121035 **
18612777-ATATATATATATATGTGTGTG-A 16500897-ATATATATATATATGTGTGTG-A **
18621622-ATACAATGTTTG-A 16509742-ATACAATGTTTG-A **
18710572-C-T 16598692-C-T **
18717770-C-T 16605890-C-T **
18826528-C-A 16714648-C-A **
18864784-C-T 16752904-C-T **
19465895-G-T 17354015-G-T **
19509688-A-G 17397808-A-G **
20621906-A-C 18460020-A-C P4_Prx **
20909429-T-TGTCATA 18747543-T-TGTCATA P4_Dst **
20989160-TATATATATATATATATA-T 18827274-TATATATATATATATATA-T P4_Dst **
21036145-C-A 18874259-C-A **
21220232-C-A 19058346-C-A **
21221290-C-A 19059404-C-A **
21228540-C-A 19066654-C-A **
21253760-C-G 19091874-C-G **
21260221-G-A 19098335-G-A **
21301103-C-A 19139217-C-A **
21314956-G-T 19153070-G-T **
21428403-C-A 19266517-C-A **
21486839-C-T 19324953-C-T FTA24848 **
21709053-CAAA-C 19547167-CAAA-C **
21899393-C-A 19737507-C-A **
22040862-G-T 19878976-G-T **
22318426-G-A 20156540-G-A DYZ19 **
22529490-A-G 20367604-A-G **
23272263-G-T 21110377-G-T **
23552637-A-G 21390751-A-G **
24421956-A-G 22275809-A-G **
24614172-C-A 22468025-C-A P3_t2 **
25524730-AC-A 23378583-AC-A P1_gr1 **
25858139-A-AC 23711992-A-AC P1_Y1 **
26323595-A-T 24177448-A-T P1_Y1 **
28548081-G-T 26401934-G-T **
28658267-C-A 26512120-C-A **
28714455-T-G 26568308-T-G **
56825975-G-T **
56826852-C-A **
56829174-T-TATTAA 4×ATTCC**
56829179-C-T **
56834170-T-C **
56835671-T-C **
58975512-G-A 56829365-G-A ***
8655507-C-A 8787466-C-A ***
13888506-G-T 11767800-G-T ***
17481117-C-A 15369237-C-A FTA24163 ***
23552552-G-A 21390666-G-A ***
23045471-CA-C,CAAA 20883585-CA-C,CAAA 16×A***
24399904-C-A 22253757-C-A ***
8849350-C-A 8981309-C-A ***
13452894-C-A 11297218-C-A ***
16602916-C-A 14491036-C-A ***
2746629-C-A 2878588-C-A ***
16042474-C-A 13930594-C-A ***
2702784-G-A 2834743-G-A ***
3032840-G-A 3164799-G-A ***
3865857-C-A 3997816-C-A ***
6828071-C-A 6960030-C-A ***
7089259-C-A 7221218-C-A ***
7218927-CCCCCACTT-C 7350886-CCCCCACTT-C ***
7220641-C-A 7352600-C-A ***
7428781-A-G 7560740-A-G ***
8209463-T-C 8341422-T-C ***
8471244-T-C 8603203-T-C FT342685 ***
8711749-TA-T 8843708-TA-T ***
8736033-C-A 8867992-C-A ***
9094811-CAT-C,CATAT 9257202-CAT-C,CATAT 10×AT***
9147344-T-C 9309735-T-C ***
9461874-T-C 9624265-T-C ***
9822897-C-A 9985288-C-A 5×TAAA***
10032904-C-A 10195295-C-A ***
10626890-C-G FGC78092 ***
10626900-C-A ***
11014433-A-ACT ***
11017841-C-A ***
13459110-C-A 11303434-C-A ***
13655525-AG-A 11499849-AG-A ***
13655531-A-G 11499855-A-G ***
13659298-A-T 11503622-A-T ***
13815077-TA-T 11694371-TA-T ***
13822315-C-A 11701609-C-A ***
13840902-A-T 11720196-A-T ***
14039233-C-A 11918527-C-A ***
14357140-C-A 12236435-C-A ***
14826246-A-G 12714313-A-G ***
15053742-C-A 12941833-C-A ***
15422098-CAAAAAAA-C 13310218-CAAAAAAA-C 20×A***
15709648-G-A 13597768-G-A ***
15816689-C-A 13704809-C-A ***
15951934-C-A 13840054-C-A ***
16181495-GA-G,GAA 14069615-GA-G,GAA 11×A***
16340851-CTGATTACATG-C 14228971-CTGATTACATG-C ***
16514304-ATGTGTG-A,ATGTGTGTG 14402424-ATGTGTG-A,ATGTGTGTG 18×TG***
17408170-C-A 15296290-C-A ***
17447016-C-A 15335136-C-A ***
17572207-C-A 15460327-C-A ***
17596790-C-A 15484910-C-A ***
18176901-C-A 16065021-C-A ***
18263573-G-A 16151693-G-A ***
19040240-C-A 16928360-C-A ***
20832215-C-A 18670329-C-A P4_Gap ***
21112241-CATGTA-C 18950355-CATGTA-C ***
21395018-C-A 19233132-C-A ***
21557710-G-A 19395824-G-A ***
22485438-A-T 20323552-A-T DYZ19 ***
23415287-T-TACATAC 21253401-T-TACATAC ***
23418875-C-A 21256989-C-A ***
27396772-C-T 25250625-C-T P1_g3 ***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.