Tree Position

R-P312/S116 > Z40481 > ZZ11 > DF27/S250 > Z195/S355 > Z272 > S450 > Z295/S1217 > ZZ77 > Z216

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19) POS-REF-ALT (hg38) Blocks Names Region McDonald BED combBED STRBigY2
858839
28817416-G-C 26671269-G-C A*
20636311-T-A 18474425-T-A P4_Prx A*
6315352-T-C 6447311-T-C IR3_Dst A*
6338422-C-T 6470381-C-T IR3_Dst A*
6268459-G-A 6400418-G-A IR3_Dst A*
19585024-T-C 17473144-T-C P5_Prx YA*
6285369-G-A 6417328-G-A IR3_Dst A*
24261801-G-A 22115654-G-A P3_b1 A*
22586308-A-G 20424422-A-G BY173618 YY+
16204287-A-C 14092407-A-C BY173610 YY+
24868262-G-A 22722115-G-A BY226119 P3_b2 +
24502839-G-A 22356692-G-A BY173606 +
7597789-C-T 7729748-C-T BY173621 YY+
8318855-G-A 8450814-G-A BY173607 YY+
9490071-T-C 9652462-T-C BY173609 +
9953978-A-T 10116369-A-T BY209401 Y+
14170924-G-T 12050218-G-T BY173608 YY+
14981340-A-G 12869416-A-G BY173612 YY+
15986899-C-T 13875019-C-T BY173611 YY+
16170031-G-A 14058151-G-A BY211627 Y+
16406568-A-G 14294688-A-G BY173619 YY+
16359794-A-T 14247914-A-T BY173604 YY+
22483554-G-T 20321668-G-T DYZ19 +
16681408-A-G 14569528-A-G BY173617 YY+
17393631-T-A 15281751-T-A BY173616 YY+
24434460-A-G 22288313-A-G BY173605 Y+
17871520-A-T 15759640-A-T BY173603 YY+
18692136-G-A 16580256-G-A BY173615 YY+
19005014-C-T 16893134-C-T BY173614 YY+
19107112-T-C 16995232-T-C BY173613 YY+
22892752-A-G 20730866-A-G BY173620 YY+
22479170-A-T 20317284-A-T BY208557 DYZ19 +
22483551-C-G 20321665-C-G BY53268 DYZ19 +
17394993-C-T 15283113-C-T BY114409 YY+
22479173-C-G 20317287-C-G FGC8621BY24630 DYZ19 +
22479167-C-T 20317281-C-T BY224174 DYZ19 +
22317408-A-C 20155522-A-C BY217281 DYZ19 *
14839646-T-TCA 12727713-T-TCA 11×CA*
13951612-TCAGC-T 11830906-TCAGC-T **
13981782-C-A 11861076-C-A **
14021205-A-C 11900499-A-C **
14025522-A-G 11904816-A-G **
14093675-G-T 11972969-G-T **
22540573-C-A 20378687-C-A **
14380053-C-A 12259349-C-A **
14502766-C-T 12390971-C-T **
14527648-A-C 12415849-A-C **
14712700-C-T 12600767-C-T **
14994378-C-A 12882463-C-A **
18994546-C-A 16882666-C-A **
13943145-C-A 11822439-C-A **
15047565-G-A 12935656-G-A **
15220896-C-A 13108982-C-A **
15370829-A-G 13258949-A-G **
15370878-A-C 13258998-A-C **
11003744-A-C **
16073001-A-C 13961121-A-C **
56830184-CTTCCACTCCTCTCCACCACA-C **
16170331-A-C 14058451-A-C **
16467556-C-A 14355676-C-A **
16354867-G-T 14242987-G-T **
13944628-T-C 11823922-T-C **
7185042-C-A 7317001-C-A **
16480944-C-A 14369064-C-A **
13577898-G-C 11422222-G-C **
13249720-A-G 11094044-A-G **
56828483-ACATTCGAGTCCATTC-A **
13305604-C-A 11149928-C-A **
13437623-G-T 11281947-G-T **
13453717-C-G 11298041-C-G **
13456286-A-C 11300610-A-C **
13576398-G-C 11420722-G-C **
13576403-A-G 11420727-A-G **
13577868-T-C 11422192-T-C **
13577872-T-A 11422196-T-A **
13577903-T-C 11422227-T-C **
13927325-A-C 11806619-A-C **
13577904-G-A 11422228-G-A **
13577905-G-T 11422229-G-T **
13577908-A-G 11422232-A-G **
13577924-A-G 11422248-A-G **
13578408-C-A 11422732-C-A **
13644820-A-C 11489144-A-C **
13696389-C-A 11540713-C-A **
13708959-T-A 11553283-T-A **
11649817-G-T **
13801611-G-C 11680905-G-C **
13858944-G-A 11738238-G-A FT9020 **
16417490-T-C 14305610-T-C **
16528202-C-A 14416322-C-A **
16505186-A-C 14393306-A-C **
24220718-C-A 22074571-C-A P3_b1 **
22483531-T-G 20321645-T-G DYZ19 **
21306614-AAAAG-A 19144728-AAAAG-A **
6790965-C-A 6922924-C-A **
4374826-C-A 4506785-C-A **
22883323-A-G 20721437-A-G **
21211240-T-C 19049354-T-C **
22963440-A-C 20801554-A-C **
22996838-C-A 20834952-C-A **
23262773-C-T 21100887-C-T **
23875599-T-C 21713713-T-C **
24247404-T-C 22101257-T-C P3_b1 **
21238249-G-A 19076363-G-A **
10677745-C-A **
27963480-C-CA 25817333-C-CA P1_Y2 11×A**
25890559-A-T 23744412-A-T P1_Y1 **
27676222-T-C 25530075-T-C P1_Y2 **
27978525-A-C 25832378-A-C P1_Y2 **
28558235-ATTTCT-A 26412088-ATTTCT-A **
28558763-G-T 26412616-G-T **
28598803-T-G 26452656-T-G **
28607761-A-G 26461614-A-G **
28772069-G-A 26625922-G-A **
22480579-C-A 20318693-C-A DYZ19 **
22263924-A-T 20102038-A-T DYZ19 **
11015019-C-T **
18263594-C-A 16151714-C-A **
16577014-T-G 14465134-T-G **
16605039-G-T 14493159-G-T **
16605041-G-A 14493161-G-A **
16656197-C-A 14544317-C-A **
11643772-T-TA **
17103308-A-C 14991428-A-C **
10659995-A-ACTCTAGTCCATTCCG **
13870610-C-A 11749904-C-A **
17798649-A-G 15686769-A-G **
9998004-C-A 10160395-C-A **
13959263-C-A 11838557-C-A **
21211241-G-C 19049355-G-C **
18951522-A-C 16839642-A-C **
10977110-C-A **
13928761-C-A 11808055-C-A **
19411997-A-G 17300117-A-G **
11025077-G-C **
19753774-C-A 17641894-C-A P5_Prx **
19831064-G-T 17719184-G-T P5_Prx **
11643797-T-A **
21208808-C-A 19046922-C-A **
21211223-A-C 19049337-A-C **
21211224-TC-T 19049338-TC-T **
11022906-C-G **
13298232-C-A 11142556-C-A **
10973906-T-C **
22123025-C-A 19961139-C-A **
10940124-T-G **
11025060-T-C **
14566464-C-A 12454664-C-A **
10023992-C-A 10186383-C-A **
16635919-C-A 14524039-C-A **
21269103-C-A 19107217-C-A **
11015035-T-C **
21639070-G-T 19477184-G-T **
18192096-G-T 16080216-G-T **
28698080-C-A 26551933-C-A **
10689500-T-A **
10764555-C-GGGTTA **
13577928-C-T 11422252-C-T **
13577929-A-G 11422253-A-G **
14649514-C-A 12537579-C-A **
13577950-G-A 11422274-G-A **
4174957-C-A 4306916-C-A **
3105253-C-A 3237212-C-A **
3228986-T-C 3360945-T-C **
3263405-C-A 3395364-C-A **
3660669-G-T 3792628-G-T **
3734648-T-C 3866607-T-C **
10932701-A-T **
19557453-C-A 17445573-C-A **
18086248-C-A 15974368-C-A **
4609921-A-G 4741880-A-G **
13577890-T-C 11422214-T-C **
13577949-T-C 11422273-T-C **
14815391-C-A 12703462-C-A **
17038424-C-A 14926544-C-A **
13447126-C-G 11291450-C-G **
14250523-C-A 12129817-C-A **
10921185-A-T **
14608192-C-A 12496394-C-A **
18540155-C-A 16428275-C-A **
19377408-A-G 17265528-A-G **
18263774-A-C 16151894-A-C **
22483530-C-A 20321644-C-A DYZ19 **
28657531-C-A 26511384-C-A **
14608203-C-A 12496405-C-A **
5367649-C-A 5499608-C-A **
6090821-C-A 6222780-C-A **
13213490-C-A 11057814-C-A **
16075210-C-A 13963330-C-A **
3407836-C-A 3539795-C-A **
10682558-A-G **
6778983-C-A 6910942-C-A **
10951303-C-A **
6996753-T-C 7128712-T-C **
13696388-C-G 11540712-C-G **
4408457-A-G 4540416-A-G **
4282176-G-A 4414135-G-A **
4921026-T-C 5052985-T-C **
3663397-G-A 3795356-G-A **
4960560-T-C 5092519-T-C **
9057410-A-T **
9363389-A-C 9525780-A-C **
17597871-C-A 15485991-C-A **
9531254-G-GTT 9693645-G-GTT IR3_Prx **
4585556-C-A 4717515-C-A **
10031252-G-T 10193643-G-T **
10654449-T-G **
10663216-C-T **
10678472-T-A **
10745622-C-A **
8673903-G-T 8805862-G-T **
10764577-T-TTCGAGTTGAA **
10781783-T-A **
10793110-C-A **
10823988-C-A **
10873498-G-T **
10886505-C-A **
10889284-A-G **
10921126-CAT-C **
10921131-C-CCA **
10921160-C-T **
8677940-G-A 8809899-G-A **
8741531-C-A 8873490-C-A **
10767935-C-G **
7222208-C-A 7354167-C-A **
5204481-T-TG 5336440-T-TG **
5385680-T-G 5517639-T-G **
5829906-T-C 5961865-T-C **
6019503-C-A 6151462-C-A **
6645497-CA-C 6777456-CA-C **
28549879-G-T 26403732-G-T **
22263923-T-A 20102037-T-A DYZ19 **
6356279-A-G 6488238-A-G **
6806961-C-A 6938920-C-A **
7106419-A-G 7238378-A-G **
15380025-G-A 13268145-G-A **
10682479-C-A **
7264889-A-G 7396848-A-G **
9531253-A-T 9693644-A-T IR3_Prx **
7630341-A-G 7762300-A-G **
7832069-T-G 7964028-T-G **
7864409-C-A 7996368-C-A **
8100574-CT-C 8232533-CT-C **
7986102-A-G 8118061-A-G **
14007262-G-T 11886556-G-T ***
10763275-C-A,T ***
6445002-C-A 6576961-C-A ***
22068460-C-A 19906574-C-A ***
15744725-C-A 13632845-C-A ***
15669964-CAAA-C,CAAAA 13558084-CAAA-C,CAAAA 18×A***
9941114-C-A 10103505-C-A ***
5957156-G-A 6089115-G-A ***
13463093-C-A 11307417-C-A ***
22483517-C-G 20321631-C-G DYZ19 ***
13479791-A-G 11324115-A-G ***
13487915-C-A 11332239-C-A ***
19022287-C-A 16910407-C-A ***
8398840-CA-C,C 8530799-CA-C,C 17×A***
18868940-T-C 16757060-T-C ***
13488664-C-A 11332988-C-A ***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.

Age Analysis Information (work in progress)

AllMcDonaldYFull
Kit: 858839961817278829687807566
Used in age calculations961817278829687807566
Counts of SNPs2018
Variant counts last updated 2019-06-16 22:40:27.



Big Tree Main Page