Tree Position

R-P312/S116 > Z290 > L21/S145 > DF13 > Z39589 > L1335/S530 > L1065 > Z16325 > S744 > S764 > S699 > S756 > Z16328 > FGC32449 > ~22261318-T-G > BY23069 > Y130955

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19) POS-REF-ALT (hg38) Blocks Names Region McDonald BED combBED STRBigY3
842637
BigY2
842637
13451362-G-T 11295686-G-T A*
6447774-G-GT 6579733-G-GT 16×TA*
13450897-A-G 11295221-A-G A*
19639884-T-TA 17528004-T-TA P5_Prx 10×AA*
56836881-T-C A*
11015866-ACCATT-A *
10013702-A-G 10176093-A-G **
10764192-C-T **
10685826-C-T **
10685809-T-TACGATTACAC **
10685789-T-TCAAG **
10685787-C-CA **
10653847-C-A **
10023679-T-A 10186070-T-A **
5415322-G-C 5547281-G-C **
8848285-A-G 8980244-A-G **
10794095-G-T **
8154002-A-C 8285961-A-C **
7862081-G-T 7994040-G-T **
7615381-A-C 7747340-A-C **
7115435-C-A 7247394-C-A **
6927126-G-T 7059085-G-T **
6619471-G-T 6751430-G-T **
6111017-A-C 6242976-A-C **
6110999-A-C 6242958-A-C **
10764209-C-T FT60457 **
10841026-C-G **
10817922-C-T **
10925671-TCCC-T **
11016254-C-CAAT **
11010095-C-A **
11009822-C-T **
10998719-C-A **
10992338-T-A **
10946606-C-CTTTAT **
10940921-C-A **
10925685-A-C **
10925669-C-CACT **
10833302-C-A **
10903108-C-T **
10883533-A-G **
10880304-T-TTAAAA **
10851965-C-G **
10851935-T-C **
10851925-A-C **
10841053-A-AC **
5809151-C-A 5941110-C-A **
5816870-C-A 5948829-C-A **
5191404-A-G 5323363-A-G **
5669692-C-A 5801651-C-A **
11005543-A-C **
17144030-T-C 15032150-T-C **
7238934-C-A 7370893-C-A **
10530-G-A **
10693438-T-G **
10969506-TCCAACCCATG-T **
10969500-T-C **
11005545-TCCAC-T **
24127434-GA-G 21981287-GA-G P3_b1 11×A**
3057211-C-A 3189170-C-A **
14485987-T-A 12365256-T-A **
10817951-A-G **
10817937-C-T **
20452379-G-T 18290493-G-T P5_Dst **
10880326-C-A **
17144056-C-G 15032176-C-G **
15450141-GC-G 13338261-GC-G **
15450138-T-A 13338258-T-A **
2853498-G-A 2985457-G-A **
3174522-C-A 3306481-C-A **
5662277-G-T 5794236-G-T **
4029944-G-T 4161903-G-T **
5609477-T-C 5741436-T-C **
13293600-G-T 11137924-G-T **
5082024-G-T 5213983-G-T **
4763526-C-A 4895485-C-A **
4701450-C-T 4833409-C-T **
4534037-C-A 4665996-C-A **
4241454-C-A 4373413-C-A **
4134027-C-A 4265986-C-A **
3988034-C-A 4119993-C-A **
3359504-T-G 3491463-T-G **
3930604-T-A 4062563-T-A **
3930573-AT-A 4062532-AT-A **
3850678-C-A 3982637-C-A **
3705869-C-A 3837828-C-A **
3659395-G-T 3791354-G-T **
3550700-C-A 3682659-C-A **
3374846-TCA-T 3506805-TCA-T **
3369500-G-T 3501459-G-T **
11030772-C-T **
13998154-T-A 11877448-T-A **
13724642-G-T 11568966-G-T **
22655045-AT-A 20493159-AT-A **
26034037-A-T 23887890-A-T P1_Y1 **
26018353-G-T 23872206-G-T P1_Y1 **
25990728-G-T 23844581-G-T P1_Y1 **
24611459-TGTGTG-T 22465312-TGTGTG-T P3_t2 **
23831399-C-G 21669513-C-G **
22994863-C-G 20832977-C-G **
22869007-C-A 20707121-C-A **
22205521-C-A 20043635-C-A **
26175968-A-C 24029821-A-C P1_Y1 **
22171275-G-T 20009389-G-T **
22001924-C-A 19840038-C-A **
21895462-T-C 19733576-T-C **
21891017-C-A 19729131-C-A **
21522163-G-C 19360277-G-C **
21281378-C-A 19119492-C-A **
21242943-G-T 19081057-G-T **
20842038-C-A 18680152-C-A P4_Dst **
26124622-GAGGGA-G 23978475-GAGGGA-G P1_Y1 **
27424025-A-T 25277878-A-T P1_g3 **
20326105-G-T 18164219-G-T P5_Dst **
56847885-C-T **
26059300-T-A 23913153-T-A P1_Y1 **
21380278-T-C 19218392-T-C **
18511225-AG-A 16399345-AG-A P6_Dst **
26388582-CA-C 24242435-CA-C P1_Y1 15×A**
27998515-AG-A 25852368-AG-A P1_Y2 **
5225292-G-GTATA 5357251-G-GTATA 12×TA**
20798583-T-A 18636697-T-A P4_Prx **
21349475-CT-C 19187589-CT-C 10×T**
56847858-C-T **
27861040-G-GTT 25714893-G-GTT P1_Y2 17×T**
56844739-A-G **
56830218-C-T **
56684057-G-T **
56684026-G-T **
28814977-A-G 26668830-A-G **
28555576-A-C 26409429-A-C **
28534424-C-A 26388277-C-A **
28481923-C-A 26335776-C-A **
20460415-G-T 18298529-G-T P5_Dst **
19929732-A-AG 17817852-A-AG P5_Prx **
11672490-G-A **
12370905-T-C **
15127864-C-A 13015951-C-A **
14988752-C-G 12876818-C-G **
14948926-C-A 12837000-C-A **
14593600-G-A 12481800-G-A **
14574593-C-A 12462793-C-A **
14562836-T-C 12451036-T-C **
14559200-C-A 12447401-C-A **
14531425-C-A 12419626-C-A **
12370898-CCT-C **
15376106-G-A 13264226-G-A **
12370895-G-GCA **
14339078-CT-C 12218373-CT-C **
14240214-C-A 12119508-C-A **
14239311-A-G 12118605-A-G **
14020011-G-T 11899305-G-T **
13998176-C-T 11877470-C-T **
13998161-C-T 11877455-C-T **
14605830-C-A 12494032-C-A **
15173523-G-A 13061609-G-A **
15447061-G-A 13335181-G-A **
19740979-C-A 17629099-C-A P5_Prx **
17144045-A-G 15032165-A-G **
19599198-T-C 17487318-T-C P5_Prx **
19535633-A-C 17423753-A-C **
19532561-T-C 17420681-T-C **
19393111-T-TA 17281231-T-TA **
18847954-T-C 16736074-T-C **
18730995-G-T 16619115-G-T **
17684421-T-A 15572541-T-A **
17144062-C-G 15032182-C-G **
17144026-A-AG 15032146-A-AG **
15495166-TC-T 13383286-TC-T **
17095304-C-A 14983424-C-A **
16760148-A-G 14648268-A-G **
16471006-G-T 14359126-G-T **
16421366-T-C 14309486-T-C **
16184230-A-T 14072350-A-T **
16027635-T-C 13915755-T-C **
15887694-T-C 13775814-T-C **
15619205-G-A 13507325-G-A **
11675239-T-A **
11005508-C-G **
28572217-T-A 26426070-T-A **
10999096-A-C **
23831405-C-T 21669519-C-T **
10687249-A-ACTCTG **
10687242-G-GCATTC **
10898263-T-C **
16522458-C-A 14410578-C-A **
13468191-GC-G 11312515-GC-G **
18365672-G-T 16253792-G-T P6_Prx **
10817988-C-T **
10693233-C-T **
10817984-A-C **
10817975-A-T **
13478196-G-T 11322520-G-T **
5221043-C-CTT 5353002-C-CTT 14×T**
10653871-C-T **
10937669-C-A **
17501834-C-A 15389954-C-A **
10693229-G-C **
17144001-C-T 15032121-C-T **
11030244-C-T **
17144053-C-T 15032173-C-T **
3853742-C-A 3985701-C-A **
16760144-G-A 14648264-G-A **
11038062-T-G **
23226475-CA-C 21064589-CA-C **
9666959-A-AT 9829350-A-AT IR3_Prx **
28580329-C-A 26434182-C-A **
27844540-T-TTA 25698393-T-TTA P1_Y2 **
5215735-C-A 5347694-C-A **
17144009-C-G 15032129-C-G **
22080531-C-A 19918645-C-A **
10785345-C-A **
10685802-C-T **
17144070-G-A 15032190-G-A **
10880313-A-T **
10962885-A-C **
11015256-C-T **
23831412-C-T 21669526-C-T **
10776202-C-A **
10686654-T-TCTGTA **
10921118-C-CTCCAT **
28814975-G-A 26668828-G-A **
20886779-TAAA-T 18724893-TAAA-T P4_Dst 32×A**
20927100-T-TG 18765214-T-TG P4_Dst **
28703344-C-A 26557197-C-A **
23997013-C-A 21850866-C-A **
17597744-GAA-G 15485864-GAA-G 14×A**
28076518-CCTTCCTTTCTTTCTTTCTTT-C 25930371-CCTTCCTTTCTTTCTTTCTTT-C P1_Y2 **
10964752-C-A **
14376557-C-A 12255853-C-A **
22333451-T-A 20171565-T-A DYZ19 **
19948115-C-A 17836235-C-A P5_Prx **
17144063-T-C 15032183-T-C **
26153980-T-G 24007833-T-G P1_Y1 **
24475157-G-T 22329010-G-T **
28812146-C-A 26665999-C-A **
28159218-T-TAC 26013071-T-TAC P1_b4 17×AC**
22803958-C-A 20642072-C-A **
10935564-T-A **
7160894-CTTTT-C 7292853-CTTTT-C 16×T**
10971160-T-C **
26204666-C-A 24058519-C-A P1_Y1 **
5189998-G-T 5321957-G-T **
14981841-C-A 12869909-C-A **
10898293-C-A **
10898292-G-C **
10898291-T-A **
10764220-A-C **
10940388-T-A **
11005577-A-T **
10628007-T-A **
10686706-C-CACTAA **
17144075-AT-A 15032195-AT-A **
17144058-G-A 15032178-G-A **
17144034-A-G 15032154-A-G **
17144012-C-G 15032132-C-G **
10999976-A-T **
19464522-C-A 17352642-C-A **
17144011-C-T 15032131-C-T **
10744756-C-T **
7536337-CA-C 7668296-CA-C 28×A**
12370879-G-C **
12370877-G-A **
12370872-C-T **
13998162-A-G 11877456-A-G **
11016251-C-CCA **
24305294-G-A 22159147-G-A P3_t1 **
19043075-C-A 16931195-C-A **
14032478-C-A 11911772-C-A **
56847251-A-T **
14584781-C-A 12472981-C-A **
10992335-C-A **
10764334-C-A **
10821223-T-C **
3732646-G-GTT 3864605-G-GTT 10×T**
10841051-C-G **
24577901-A-G 22431754-A-G P3_t2 **
9962086-C-A 10124477-C-A **
10751141-T-C **
56847254-T-C **
11005569-C-T **
10969475-C-A **
15450132-G-T 13338252-G-T **
15450129-C-T 13338249-C-T **
24621256-TTG-T 22475109-TTG-T P3_t2 **
3461244-CT-C 3593203-CT-C 9×T**
13637351-A-C 11481675-A-C **
10851983-C-T **
10937666-A-T **
56734759-A-G **
10969473-C-G **
6891955-C-A 7023914-C-A **
10805535-G-T **
13196991-C-A 11041315-C-A **
18401199-C-A 16289319-C-A P6_Gap 30×A**
14557990-C-A 12446191-C-A **
11005538-AC-A **
10690822-C-A **
11038183-T-A **
11021537-TATTAC-T **
10652613-C-A **
10962945-T-A **
26376520-C-A 24230373-C-A P1_Y1 **
13998160-T-C 11877454-T-C **
56847235-A-C **
6305913-C-CAA 6437872-C-CAA IR3_Dst 14×A**
6434619-C-A 6566578-C-A **
11005616-T-G **
11005596-G-A **
10946593-C-A **
13998153-T-C 11877447-T-C **
23440444-C-A 21278558-C-A **
10764337-T-C **
13998164-A-G 11877458-A-G **
14474873-C-A 12354142-C-A **
28609435-C-A 26463288-C-A **
22164462-G-A 20002576-G-A **
10744764-A-T **
56847236-G-A **
16180459-C-A 14068579-C-A **
7088054-C-A 7220013-C-A **
10983732-C-A **
10761750-G-T **
10850288-T-C **
13460974-G-C 11305298-G-C **
10992364-C-T **
21961720-G-A 19799834-G-A 12×A**
5228377-T-C 5360336-T-C FT17316 **
10992375-CACTCA-C **
10776576-G-C ***
10919242-A-G ***
5532646-CTT-C,CT 5664605-CTT-C,CT 15×T***
13457815-C-T 11302139-C-T ***
18261614-A-C 16149734-A-C ***
3115734-G-GA 3247693-G-GA 14×A***
2814877-TA-T,TAA 2946836-TA-T,TAA 14×A***
19394059-CTTT-C 17282179-CTTT-C 37×T***
2833178-CTTTTTTTT-C,CTTTTTTTTTTT 2965137-CTTTTTTTT-C,CTTTTTTTTTTT 19×T***
5683883-G-A 5815842-G-A ***
4076728-GTA-G,GTATATA 4208687-GTA-G,GTATATA 10×TA***
18261622-G-T 16149742-G-T ***
9136674-T-C 9299065-T-C ***
13606877-CAAAAAAA-C,CAAAAAA 11451201-CAAAAAAA-C,CAAAAAA 25×A***
15557107-A-G 13445227-A-G ***
16616592-A-G 14504712-A-G ***
16708653-C-A 14596773-C-A ***
13705525-C-G 11549849-C-G ***
18630666-CTT-C,CTTTT 16518786-CTT-C,CTTTT 20×T***
21276630-T-C 19114744-T-C ***
10973632-C-T ***
23104213-T-C 20942327-T-C ***
10934838-C-T ***
5557238-CA-C,CAA 5689197-CA-C,CAA 23×A***
32887-G-T ***
18261618-T-A 16149738-T-A ***
10837895-C-A ***
10925522-T-A ***
10807275-T-G ***
10683609-C-A ***
18636612-CTTT-C,CT 16524732-CTTT-C,CT 17×T***
28533700-GTTT-G 26387553-GTTT-G 15×T***
24383530-CA-C,CAA 22237383-CA-C,CAA 15×A***
13856360-A-AAAGGT 11735654-A-AAAGGT ***
9144383-T-C 9306774-T-C ***
10973623-G-T ***
14826548-GT-G,GTT 12714615-GT-G,GTT 19×T***
13446560-C-T 11290884-C-T ***
11643678-G-C ***
10763347-T-C,G ***
16710820-G-A 14598940-G-A ***
11652780-C-A ***
15084429-C-CA 12972519-C-CA 13×A***
6784476-G-GA 6916435-G-GA 23×A***
18190655-A-G 16078775-A-G ***
56838078-C-A ***
10940358-G-T ***
10744433-CAACTGCACTG-C,CCACTGCACTC ***
10934806-C-T ***
13468250-A-G 11312574-A-G ***
13446556-AT-A 11290880-AT-A ***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.

Age Analysis Information (work in progress)

AllMcDonaldYFull
Kit: 842637988719480351907899753
Kit: 8426371508892994526808349145
Used in age calculations1508892994526808349145
Counts of SNPs00
Variant counts last updated 2019-12-06 02:45:08.



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