Tree Position

R-P312/S116 > Z40481 > ZZ11 > DF27/S250 > Z195/S355 > Z272 > BY907 > Y14050 > BY34208

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19) POS-REF-ALT (hg38) Blocks Names Region McDonald BED combBED STRBigY2
316568
13686992-G-A 11531316-G-A A*
13449885-T-C 11294209-T-C A*
22313118-A-G 20151232-A-G DYZ19 A*
26115041-A-G 23968894-A-G P1_Y1 A*
22267180-T-C 20105294-T-C BY214841 DYZ19 +
22477339-T-G 20315453-T-G DYZ19 +
22468278-T-C 20306392-T-C BY222053 DYZ19 +
22458307-G-A 20296421-G-A DYZ19 +
22437262-G-C 20275376-G-C BY218320 DYZ19 +
16348444-C-T 14236564-C-T BY167280 YY+
8794968-C-T 8926927-C-T BY166553 YY+
17018328-C-A 14906448-C-A BY167459 YY+
23135869-G-T 20973983-G-T BY168679 YY+
13667017-G-A 11511341-G-A +
15008258-T-G 12896343-T-G BY166986 YY+
17557714-T-TA 15445834-T-TA 8×A+
18169532-T-C 16057652-T-C BY167823 YY+
18688863-A-G 16576983-A-G BY167904 YY+
19533018-C-T 17421138-C-T BY168162 YY+
2803778-C-T 2935737-C-T BY165857 YY+
8789257-G-A 8921216-G-A BY166550 YY+
22487336-C-A 20325450-C-A DYZ19 +
19061685-T-A 16949805-T-A BY168016 YY+
24440301-T-C 22294154-T-C BY168890 Y+
8437485-G-A 8569444-G-A BY166397 YY+
7973915-G-A 8105874-G-A BY166255 YY+
8684444-G-A 8816403-G-A BY166509 YY+
8684445-C-A 8816404-C-A BY166510 YY+
7829804-G-A 7961763-G-A BY166208 YY+
7805087-C-A 7937046-C-A BY166201 YY+
9736464-G-T 9898855-G-T BY166697 IR3_Prx +
15608309-A-G 13496429-A-G BY167115 YY+
23548787-C-G 21386901-C-G BY168762 YY+
9855686-T-G 10018077-T-G BY209367 YY+
15667201-C-G 13555321-C-G BY167130 Y+
15711585-A-G 13599705-A-G BY167140 YY+
8684446-A-G 8816405-A-G BY166511 YY+
13522127-G-T 11366451-G-T **
13466052-C-A 11310376-C-A **
13491009-C-T 11335333-C-T **
13495757-T-C 11340081-T-C **
13935230-C-A 11814524-C-A **
13611033-A-G 11455357-A-G **
14627191-C-T 12515259-C-T **
14307658-A-G 12186952-A-G **
13958420-C-A 11837714-C-A **
11666285-A-T **
13885652-T-A 11764946-T-A **
14036185-A-G 11915479-A-G **
14149433-G-T 12028727-G-T **
10856266-C-A **
13405842-T-C 11250166-T-C **
10801757-C-G **
8974380-G-T 9136771-G-T **
9140177-C-A 9302568-C-A **
3604220-G-T 3736179-G-T **
9847429-A-G 10009820-A-G **
10654419-C-T **
10668829-G-T **
10693561-C-A **
10758199-C-A **
10770328-T-C **
10796639-CTCCATTCCATTCCAT-C **
10809047-C-A **
11006815-C-A **
10814216-A-G **
10834202-A-ATTCCGTTCTG **
10843681-C-A **
10847482-C-A **
10907707-A-T **
10907710-A-T **
10907731-G-A **
10907735-T-C **
10930087-G-C **
10967551-T-G **
10988557-T-G **
15001475-C-A 12889560-C-A **
5061189-T-C 5193148-T-C FGC212 **
15038229-T-TA 12926319-T-TA **
23455176-A-T 21293290-A-T **
22147367-C-A 19985481-C-A **
22161618-T-G 19999732-T-G **
22190697-G-A 20028811-G-A **
22360994-G-A 20199108-G-A DYZ19 **
23056129-G-A 20894243-G-A **
23361734-A-G 21199848-A-G **
23438774-T-C 21276888-T-C **
23455126-T-C 21293240-T-C **
23455131-G-A 21293245-G-A **
23455170-C-CT 21293284-C-CT **
23569178-A-G 21407292-A-G **
21813902-T-C 19652016-T-C **
24080285-G-T 21934138-G-T P3_b1 **
24359576-T-C 22213429-T-C **
25876618-G-T 23730471-G-T P1_Y1 **
25937931-C-A 23791784-C-A P1_Y1 **
28548632-G-A 26402485-G-A **
28614218-C-A 26468071-C-A **
28617702-G-A 26471555-G-A **
28724867-G-A 26578720-G-A **
28767093-T-A 26620946-T-A **
28767094-T-G 26620947-T-G **
28767095-TTGG-T 26620948-TTGG-T **
21911994-C-A 19750108-C-A **
21558825-A-G 19396939-A-G **
15392517-A-T 13280637-A-T **
18629962-C-A 16518082-C-A **
15402872-C-A 13290992-C-A **
15406842-A-G 13294962-A-G **
15941519-C-A 13829639-C-A **
16057998-C-A 13946118-C-A **
16063027-G-T 13951147-G-T **
16789737-G-C 14677857-G-C **
17066011-C-T 14954131-C-T **
17254741-C-A 15142861-C-A **
17334027-C-T 15222147-C-T **
18190855-C-G 16078975-C-G **
18191284-C-A 16079404-C-A **
18631892-C-A 16520012-C-A **
21482762-C-CTTT 19320876-C-CTTT 19×T**
18780658-T-C 16668778-T-C **
19253104-C-T 17141224-C-T **
19310998-C-A 17199118-C-A **
19439621-G-A 17327741-G-A **
19524445-C-A 17412565-C-A **
19700705-C-A 17588825-C-A P5_Prx **
20449371-C-A 18287485-C-A P5_Dst **
20486774-A-G 18324888-A-G P5_Dst **
20486783-A-AG 18324897-A-AG P5_Dst **
21146363-A-C 18984477-A-C **
21196385-C-A 19034499-C-A **
16063398-C-A 13951518-C-A **
56842336-C-A **
8720161-C-T 8852120-C-T **
6428561-C-A 6560520-C-A **
21135061-C-A 18973175-C-A **
10967512-C-A **
11643282-C-A **
21953646-C-A 19791760-C-A **
23875588-C-A 21713702-C-A **
17334008-A-G 15222128-A-G **
2708725-G-A 2840684-G-A **
9456153-G-A 9618544-G-A **
21853721-G-A 19691835-G-A **
10866064-T-A **
10660058-A-C **
17898032-C-A 15786152-C-A **
10632547-C-A **
10834198-T-A **
10866054-T-A **
7304624-C-A 7436583-C-A **
56842343-G-T **
10880718-C-A **
18848648-C-T 16736768-C-T **
10850552-GTCCATTCCATTCCAT-G **
13306205-C-A 11150529-C-A **
8668149-T-C 8800108-T-C **
15211312-G-T 13099398-G-T **
22360983-C-T 20199097-C-T DYZ19 **
28499479-C-A 26353332-C-A **
6516333-C-A 6648292-C-A **
20452374-T-G 18290488-T-G P5_Dst **
3817965-C-A 3949924-C-A **
11025210-C-A **
10888117-G-T **
58819748-C-A 56771123-G-T **
10930030-A-C **
10930046-T-A **
18801435-C-A 16689555-C-A **
2854834-C-T 2986793-C-T **
6693004-G-T 6824963-G-T **
21092180-C-A 18930294-C-A **
14768548-C-A 12656617-C-A **
6729731-C-A 6861690-C-A **
7029988-C-A 7161947-C-A **
2708685-G-A 2840644-G-A **
2708692-C-T 2840651-C-T **
13907758-C-A 11787052-C-A **
10988591-A-G **
6490801-C-A 6622760-C-A **
2708699-C-T 2840658-C-T **
23455187-C-T 21293301-C-T **
23455196-C-T 21293310-C-T **
23455197-C-G 21293311-C-G **
23455216-ATT-A 21293330-ATT-A **
16412228-C-A 14300348-C-A **
22361010-G-C 20199124-G-C DYZ19 **
11034798-C-G **
11034816-C-A **
28814116-C-T 26667969-C-T **
17203292-C-A 15091412-C-A **
14953484-C-A 12841558-C-A **
15400334-C-A 13288454-C-A **
2832766-C-A 2964725-C-A **
23455153-C-G 21293267-C-G **
6277352-A-C 6409311-A-C IR3_Dst **
28234444-C-A 26088297-C-A P1_b4 **
15070529-T-C 12958620-T-C **
2845845-AAAAAG-A 2977804-AAAAAG-A **
2903394-T-C 3035353-T-C **
3302549-C-A 3434508-C-A **
3395918-C-A 3527877-C-A **
4108148-T-C 4240107-T-C **
4417448-G-T 4549407-G-T **
5675441-T-A 5807400-T-A **
5717726-C-A 5849685-C-A **
6062158-C-A 6194117-C-A **
6120298-C-A 6252257-C-A **
6277410-A-T 6409369-A-T IR3_Dst **
10657004-C-T **
6289464-C-T 6421423-C-T IR3_Dst **
6368205-T-G 6500164-T-G **
6476569-C-A 6608528-C-A **
6786862-T-C 6918821-T-C **
6822542-C-T 6954501-C-T **
7155349-C-A 7287308-C-A **
7422263-A-T 7554222-A-T **
7479876-A-G 7611835-A-G IR1_L **
7578429-C-A 7710388-C-A **
7784501-C-A 7916460-C-A **
7868166-G-T 8000125-G-T **
8167945-C-T 8299904-C-T **
7254045-C-A 7386004-C-A **
3324208-G-A 3456167-G-A **
6708998-C-A 6840957-C-A **
17604981-C-G 15493101-C-G **
10660009-C-A **
10660059-A-T **
23952932-C-A 21806785-C-A **
15093552-C-A 12981640-C-A **
17333997-C-T 15222117-C-T **
28532113-C-A 26385966-C-A **
28626004-C-A 26479857-C-A **
4215627-G-T 4347586-G-T **
17481164-C-A 15369284-C-A **
19558319-C-A 17446439-C-A **
10660001-T-G **
18759025-C-A 16647145-C-A **
10660008-C-A **
8766413-C-A 8898372-C-A **
23742361-C-A 21580475-C-A **
15937281-C-A 13825401-C-A **
15743665-C-A 13631785-C-A **
14384574-G-T 12263870-G-T **
15221826-C-A 13109912-C-A **
14464409-C-A 12343682-C-A **
56829980-TTCCA-T ***
56831126-CT-C ***
21738456-C-A 19576570-C-A BY135122 ***
9520124-C-A 9682515-C-A ***
56839271-A-AG ***
9847289-A-ATTT 10009680-A-ATTT 28×T***
10930014-C-A ***
15656882-C-T 13545002-C-T ***
15477291-CAAAA-C,CAAA 13365411-CAAAA-C,CAAA 18×A***
56829973-CAATCCA-C,CACTCCAATCCA ***
8452192-CAA-C,CAAA 8584151-CAA-C,CAAA 15×A***
10772421-C-T ***
17503508-G-A 15391628-G-A ***
23824930-A-G 21663044-A-G ***
15248683-C-A 13136769-C-A ***
21691568-TT-A,TA 19529682-TT-A,TA ***
18462580-TACACAC-T,TAC 16350700-TACACAC-T,TAC P6_Dst 20×AC***
23272283-A-G 21110397-A-G ***
22865403-C-A 20703517-C-A ***
18959239-AAAT-A 16847359-AAAT-A ***
56831101-C-A ***
4271109-C-A 4403068-C-A ***
5409676-G-T 5541635-G-T ***
22201815-G-T 20039929-G-T ***
13217611-A-G 11061935-A-G ***
9173199-C-T 9335590-C-T ***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.

Age Analysis Information (work in progress)

AllMcDonaldYFull
Kit: 316568933168076371237548142
Used in age calculations933168076371237548142
Counts of SNPs2323
Variant counts last updated 2019-07-03 01:07:50.



Big Tree Main Page