Tree Position

R-P312/S116 > Z40481 > ZZ11 > U152/S28 > L2/S139 > Z41150 > Z49 > Y107974 > BY39347

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19) POS-REF-ALT (hg38) Blocks Names Region McDonald BED combBED STRBigY2
841801
26200020-C-T 24053873-C-T P1_Y1 A*
28817381-A-T 26671234-A-T A*
24291307-G-A 22145160-G-A P3_t1 A*
19876639-C-T 17764759-C-T P5_Prx A*
26124711-G-A 23978564-G-A P1_Y1 A*
13452591-C-T 11296915-C-T A*
25911792-A-AT 23765645-A-AT P1_Y1 A*
13687765-T-A 11532089-T-A A*
17694577-G-A 15582697-G-A BY165196 YY+
19335569-G-A 17223689-G-A BY165349 YY+
23141237-C-T 20979351-C-T BY143307 YY+
17547282-C-T 15435402-C-T BY165183 YY+
18946471-C-A 16834591-C-A BY165307 YY+
18100652-C-A 15988772-C-A BY165245 YY+
19522335-G-A 17410455-G-A BY165377 YY+
18945718-G-A 16833838-G-A YY+
15723496-G-A 13611616-G-A BY164994 YY+
23608879-G-C 21446993-G-C BY165604 YY+
22761558-A-G 20599672-A-G BY165531 YY+
18219918-A-G 16108038-A-G BY165257 Y+
22753513-C-T 20591627-C-T BY165529 YY+
13868021-G-A 11747315-G-A BY164846 +
22461120-T-C 20299234-T-C BY220651 DYZ19 +
18236879-T-TA 16124999-T-TA +
18868376-A-C 16756496-A-C BY165300 YY+
21563625-C-T 19401739-C-T BY165429 YY+
21548167-T-G 19386281-T-G BY165427 YY+
23795354-T-C 21633468-T-C BY165614 Y+
9061660-C-T 9224051-C-T BY164775 Y+
22272571-C-A 20110685-C-A Z7877 DYZ19 +
28732276-A-G 26586129-A-G BY165651 Y+
6787908-GA-G 6919867-GA-G +
16595942-G-C 14484062-G-C BY165070 YY+
21081620-T-G 18919734-T-G BY165389 YY+
16756809-G-T 14644929-G-T BY165096 YY+
14127480-C-A 12006774-C-A BY164870 YY+
21110785-C-T 18948899-C-T BY165391 YY+
21144181-G-T 18982295-G-T BY165393 YY+
6851644-A-G 6983603-A-G BY61695 YY+
8806347-C-T 8938306-C-T BY164757 YY+
24343340-C-T 22197193-C-T BY226061 P3_t1 +
23820116-A-T 21658230-A-T BY165616 Y+
22317424-T-G 20155538-T-G DYZ19 *
22314557-C-G 20152671-C-G DYZ19 *
22269329-G-A 20107443-G-A DYZ19 *
19794336-A-G 17682456-A-G P5_Prx *
22317060-T-A 20155174-T-A DYZ19 *
14765807-T-G 12653876-T-G **
14888247-G-C 12776313-G-C **
14871373-C-A 12759443-C-A **
14846954-A-G 12735020-A-G **
15047908-CCT-C 12935999-CCT-C **
14888258-G-A 12776324-G-A **
15161347-C-A 13049433-C-A **
15404227-G-A 13292347-G-A **
15394924-C-A 13283044-C-A **
15366427-T-C 13254547-T-C **
15364523-C-A 13252643-C-A **
15363955-G-C 13252075-G-C **
15363916-C-CA 13252036-C-CA **
15338646-C-A 13226764-C-A **
15211045-A-G 13099131-A-G **
15119524-A-T 13007611-A-T **
14942898-A-G 12830972-A-G **
15119523-T-A 13007610-T-A **
15115714-C-A 13003801-C-A **
15104823-A-T 12992911-A-T **
15104811-G-T 12992899-G-T **
15104806-G-A 12992894-G-A **
15047903-C-CCA 12935994-C-CCA **
15047902-A-C 12935993-A-C **
15047896-C-T 12935987-C-T **
14765804-T-C 12653873-T-C **
14735038-G-A 12623106-G-A **
14765792-A-G 12653861-A-G **
10934408-C-T **
11032239-A-G **
11010237-T-C **
10997710-GTTCCATTCCATTCCA-G **
10934422-T-A **
10934421-C-A **
10934414-T-C **
10934407-G-A **
11037177-C-A **
10934396-A-C **
10934386-C-A **
10934382-G-A **
13961890-G-A 11841184-G-A PF3696 CTS1555 **
10801303-A-G **
10799240-C-T FGC77412 **
10789864-T-G **
11033087-T-C **
13482067-A-C 11326391-A-C **
14765789-T-C 12653858-T-C **
14722515-A-G 12610583-A-G **
14765783-G-A 12653852-G-A **
14735101-G-A 12623169-G-A **
14735088-C-T 12623156-C-T **
14735043-GT-G 12623111-GT-G **
14735041-G-GC 12623109-G-GC **
14735032-G-A 12623100-G-A **
14735000-C-A 12623068-C-A **
14593018-C-A 12481218-C-A **
13486914-A-T 11331238-A-T **
14219677-A-T 12098971-A-T **
14068402-C-A 11947696-C-A **
13911159-C-A 11790453-C-A **
13800992-A-G 11680286-A-G 4×GGAAT**
13720534-TAATGG-T 11564858-TAATGG-T **
13596969-C-A 11441293-C-A **
13587921-C-A 11432245-C-A **
15404243-T-C 13292363-T-C **
23713748-ATG-A 21551862-ATG-A 19×TG**
15618513-T-G 13506633-T-G **
22755597-T-TA 20593711-T-TA **
22881266-A-G 20719380-A-G **
22881261-G-T 20719375-G-T **
22881239-ATTT-A 20719353-ATTT-A 9×T**
22881217-T-C 20719331-T-C **
22835273-ACCACAAAAAAAG-A 20673387-ACCACAAAAAAAG-A **
22791216-T-G 20629330-T-G **
22749454-G-T 20587568-G-T **
23059092-C-A 20897206-C-A **
22173942-C-T 20012056-C-T **
22135924-T-A 19974038-T-A **
22092857-G-A 19930971-G-A **
22032710-T-C 19870824-T-C **
22011324-T-A 19849438-T-A **
21991580-C-A 19829694-C-A **
22881289-A-G 20719403-A-G **
23311181-T-G 21149295-T-G **
21702045-CAAAA-C 19540159-CAAAA-C 10×A**
28461958-C-CAG 26315811-C-CAG **
28768574-T-A 26622427-T-A **
28724397-C-A 26578250-C-A **
28724338-G-T 26578191-G-T **
28724328-C-T 26578181-C-T **
28635393-A-T 26489246-A-T **
28601123-A-C 26454976-A-C **
28460825-C-A 26314678-C-A **
23435190-T-A 21273304-T-A **
27264837-TAA-T 25118690-TAA-T P1_g3 12×A**
26084868-T-C 23938721-T-C P1_Y1 **
25512897-G-T 23366750-G-T P1_gr1 **
24878822-TCTC-T 22732675-TCTC-T g1 **
24667965-T-A 22521818-T-A P3_b2 **
23803318-A-G 21641432-A-G **
23511677-C-A 21349791-C-A **
21911243-G-A 19749357-G-A **
21702046-A-T 19540160-A-T **
15745940-A-C 13634060-A-C **
17327461-C-A 15215581-C-A **
17788618-C-A 15676738-C-A **
10745081-C-A **
17374348-C-A 15262468-C-A **
17355533-T-G 15243653-T-G **
17349376-CTCAAAAAAAAAAAAAAAAAAAAAAAAAA-C 15237496-CTCAAAAAAAAAAAAAAAAAAAAAAAAAA-C **
17346333-A-G 15234453-A-G **
17157618-A-T 15045738-A-T **
17860731-A-T 15748851-A-T **
17054892-T-A 14943012-T-A **
16838909-G-A 14727029-G-A **
16821438-C-CA 14709558-C-CA **
16749970-G-A 14638090-G-A **
16231274-C-A 14119394-C-A **
15964843-G-A 13852963-G-A **
15831380-G-A 13719500-G-A **
17789595-G-A 15677715-G-A **
18022497-C-A 15910617-C-A **
21702043-T-C 19540157-T-C **
19537955-A-T 17426075-A-T **
21662167-A-C 19500281-A-C **
21624950-C-A 19463064-C-A **
21574986-G-T 19413100-G-T **
21326569-C-A 19164683-C-A **
21092343-C-A 18930457-C-A **
20239305-G-T 18077419-G-T P5_Dst **
19482118-C-A 17370238-C-A **
18572656-C-A 16460776-C-A **
19394237-C-A 17282357-C-A **
19393293-A-T 17281413-A-T **
19198112-G-A 17086232-G-A **
19001220-G-A 16889340-G-A **
18841135-A-G 16729255-A-G **
18816993-C-A 16705113-C-A **
18764424-T-A 16652544-T-A **
10768700-T-TTGAGC **
10869871-C-T **
10688608-T-A **
10688604-C-A **
13722736-T-C 11567060-T-C **
11030249-T-A **
28724322-G-A 26578175-G-A **
28724277-C-A 26578130-C-A **
28724270-G-A 26578123-G-A **
18071843-C-A 15959963-C-A **
2854906-T-C 2986865-T-C **
9764313-A-C 9926704-A-C **
22236918-G-A 20075032-G-A DYZ19 **
10663814-T-C **
21486881-C-A 19324995-C-A **
7613924-A-G 7745883-A-G **
13644809-C-A 11489133-C-A **
16608050-AT-A 14496170-AT-A 9×T**
7649329-G-A 7781288-G-A **
7649328-T-C 7781287-T-C **
7613915-A-G 7745874-A-G **
15252691-C-A 13140777-C-A **
13899486-C-A 11778780-C-A **
10950932-A-T **
10932641-G-T **
16989314-C-A 14877434-C-A **
10953591-C-A **
7780741-T-A 7912700-T-A 11×A**
21105580-T-C 18943694-T-C **
21105577-C-G 18943691-C-G **
10688601-C-A **
17673289-C-A 15561409-C-A **
10861705-G-T **
13722655-G-A 11566979-G-A **
11013920-C-T **
14515637-G-T 12403838-G-T **
28622667-G-C 26476520-G-C **
28622664-C-A 26476517-C-A **
11650147-C-A **
14735031-A-G 12623099-A-G **
26053583-T-G 23907436-T-G P1_Y1 **
2884907-C-A 3016866-C-A **
15352853-C-A 13240972-C-A **
8850135-C-A 8982094-C-A **
21146450-A-T 18984564-A-T **
14429288-C-A 12308563-C-A **
13466352-A-C 11310676-A-C **
14735020-C-CA 12623088-C-CA **
20840208-C-A 18678322-C-A P4_Gap **
20101697-T-A 17989817-T-A P5_Dst **
21187851-T-G 19025965-T-G **
28724312-G-A 26578165-G-A **
10677762-C-A **
7301586-G-A 7433545-G-A **
14735086-T-A 12623154-T-A **
22881291-A-G 20719405-A-G **
10768635-T-C **
2817709-CAAAAA-C 2949668-CAAAAA-C 30×A**
21100833-G-T 18938947-G-T **
22881263-C-G 20719377-C-G **
6755392-C-A 6887351-C-A YP5000 **
18060306-A-ATGTG 15948426-A-ATGTG **
6037598-G-T 6169557-G-T Z2338Y3549 FGC8754 **
9056459-C-A **
14931975-C-A 12820040-C-A **
21695067-C-A 19533181-C-A **
9700735-C-A 9863126-C-A IR3_Prx **
22353449-C-A 20191563-C-A DYZ19 **
15578884-C-A 13467004-C-A **
11037125-C-A **
14023072-C-A 11902366-C-A **
11005465-T-A **
10992620-T-C **
15496914-C-A 13385034-C-A **
10955295-C-A **
14735097-T-C 12623165-T-C **
16305781-C-A 14193901-C-A **
13839785-G-A 11719079-G-A **
28660474-C-A 26514327-C-A **
19048041-G-GTA 16936161-G-GTA **
14734996-A-G 12623064-A-G **
14734995-C-T 12623063-C-T **
28724314-C-T 26578167-C-T **
10973612-C-T **
7167119-T-G 7299078-T-G **
28655584-G-A 26509437-G-A **
8776593-G-T 8908552-G-T **
56848666-G-T **
6505264-T-C 6637223-T-C **
7649317-G-A 7781276-G-A **
2855590-A-T 2987549-A-T **
2894607-CT-C 3026566-CT-C **
3851894-C-A 3983853-C-A **
4114221-C-A 4246180-C-A **
8350664-T-C 8482623-T-C **
4326071-G-A 4458030-G-A **
8321417-A-AT 8453376-A-AT **
4900845-A-G 5032804-A-G **
5214581-C-A 5346540-C-A **
5292876-C-A 5424835-C-A **
8216283-G-A 8348242-G-A **
5612915-C-G 5744874-C-G **
8008806-C-A 8140765-C-A **
6800586-C-A 6932545-C-A **
8717863-C-T 8849822-C-T **
7541016-T-G 7672975-T-G **
7649315-A-C 7781274-A-C **
7649305-C-T 7781264-C-T **
7709255-C-A 7841214-C-A **
7613926-T-C 7745885-T-C **
7613922-A-G 7745881-A-G **
7613905-C-T 7745864-C-T **
7709285-C-A 7841244-C-A **
7896640-C-A 8028599-C-A **
7717747-T-G 7849706-T-G **
7509940-C-A 7641899-C-A **
7761171-C-A 7893130-C-A **
7258511-T-G 7390470-T-G **
7781074-C-A 7913033-C-A **
7098586-C-A 7230545-C-A **
2790464-T-TG 2922423-T-TG **
7649334-A-ATT 7781293-A-ATT **
9806914-T-C 9969305-T-C **
10683484-C-T **
2722052-G-C 2854011-G-C **
19078469-C-A 16966589-C-A **
7108800-C-A 7240759-C-A **
14888249-ATT-A 12776315-ATT-A **
9058700-T-C 9221091-T-C **
10017826-C-A 10180217-C-A **
8479463-G-A 8611422-G-A **
28461947-T-A 26315800-T-A **
15916374-C-A 13804494-C-A **
9186079-C-A 9348470-C-A **
9958972-C-T 10121363-C-T **
17591866-C-A 15479986-C-A **
25512919-G-T 23366772-G-T P1_gr1 **
16305807-C-T 14193927-C-T **
14735035-A-G 12623103-A-G **
9109929-C-A **
14765782-G-C 12653851-G-C **
7649316-T-C 7781275-T-C **
8911623-C-T 9043582-C-T **
10763170-C-G **
8092686-G-T 8224645-G-T **
24494605-A-G 22348458-A-G ***
10807238-C-A ***
13819448-C-G 11698742-C-G ***
14096618-TAAAAA-T 11975912-TAAAAA-T 17×A***
10784375-C-A ***
10654793-T-A ***
7976275-TA-T 8108234-TA-T ***
9643020-C-A 9805411-C-A IR3_Prx ***
3621482-G-T 3753441-G-T ***
9446811-C-A 9609202-C-A ***
22971565-T-C 20809679-T-C ***
7974234-G-A 8106193-G-A ***
10769444-G-GCATGT ***
8093208-T-C 8225167-T-C ***
15263518-C-A 13151608-C-A ***
56827588-T-C ***
9029736-CTT-C,CTTT 9192127-CTT-C,CTTT 16×T***
10757359-C-T ***
10989491-C-CC,T ***
16510855-C-A 14398975-C-A ***
8849601-C-A 8981560-C-A ***
8713855-C-A 8845814-C-A ***
7518493-CAAA-C,CAA 7650452-CAAA-C,CAA 19×A***
17951299-ATTTTTT-A,AT 15839419-ATTTTTT-A,AT 25×T***
17866671-A-G 15754791-A-G ***
15604354-CAAAAAA-C,CAAAAA 13492474-CAAAAAA-C,CAAAAA 20×A***
17353133-A-T 15241253-A-T ***
8571150-CA-C,CAA 8703109-CA-C,CAA 14×A***
10757357-C-A ***
17133028-C-A 15021148-C-A ***
19094959-C-A 16983079-C-A ***
17078863-T-C 14966983-T-C ***
23499575-C-CAA 21337689-C-CAA 12×A***
17020330-A-G 14908450-A-G ***
10693779-C-A ***
21929600-GTATA-G,GTA 19767714-GTATA-G,GTA 12×TA***
16290898-C-A 14179018-C-A ***
8717102-C-A 8849061-C-A ***
15617066-CA-C,CAA 13505186-CA-C,CAA 11×A***
19107062-C-A 16995182-C-A ***
14459470-C-A 12338743-C-A ***
6739957-G-A 6871916-G-A ***
22207685-A-G 20045799-A-G ***
10804000-C-A ***
22044767-T-C 19882881-T-C ***
7292448-C-A 7424407-C-A ***
21939262-C-A 19777376-C-A ***
7008927-C-A 7140886-C-A ***
14842382-C-A 12730449-C-A ***
6739956-T-C 6871915-T-C ***
15055591-AC-A 12943683-AC-A ***
6398304-C-A 6530263-C-A ***
17817844-C-A 15705964-C-A ***
21306075-A-C 19144189-A-C ***
15412475-T-A 13300595-T-A ***
19103880-GTT-G 16992000-GTT-G 13×T***
6739948-T-C 6871907-T-C ***
15040921-G-A 12929011-G-A ***
17764027-C-A 15652147-C-A ***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.

Age Analysis Information (work in progress)

AllMcDonaldYFull
Kit: 841801888776072570517190573
Used in age calculations888776072570517190573
Counts of SNPs2328
Variant counts last updated 2019-10-28 02:47:46.



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