Tree Position

R-P312/S116 > Z290 > L21/S145 > DF13 > ZZ10 > Z253 > ZZ6 > FGC3249 > FGC3236 > BY39757 > BY48599 > BY158603 > 7349541-G-A

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19) POS-REF-ALT (hg38) Blocks Names Region McDonald BED combBED STRBigY2
50748
BigY3
50748
9638442-G-C 9800833-G-C FGC61342 IR3_Prx A+
28091183-C-G 25945036-C-G P1_Y2 A*
6529269-G-GT 6661228-G-GT 10×TA*
22155787-A-C 19993901-A-C YYA*
20342532-G-A 18180646-G-A P5_Dst A*
18493356-T-G 16381476-T-G P6_Dst A*
20911300-A-ATTTCGCC 18749414-A-ATTTCGCC P4_Dst A*
18315747-A-C 16203867-A-C P6_Prx A*
3061469-T-TAA 3193428-T-TAA A*
25930282-G-GA 23784135-G-GA P1_Y1 10×AA*
21002535-T-TTC 18840649-T-TTC P4_Dst 16×TCA*
26231138-G-T 24084991-G-T P1_Y1 A*A*
19809599-C-CA 17697719-C-CA P5_Prx 10×AA*
56879803-A-T A*
13463285-A-T 11307609-A-T A*
56879659-A-G A*
24267223-G-GCA 22121076-G-GCA P3_b1 15×CAA*
59001610-A-T 56855463-A-T A*
59017560-G-A 56871413-G-A A*
4618516-G-A 4750475-G-A FGC69643 A*
19726191-T-TA 17614311-T-TA P5_Prx 12×AA*
58983208-C-A 56837061-C-A A*
17341806-G-A 15229926-G-A BY158021 YY++
23411957-A-T 21250071-A-T BY158567 YY++
15481067-A-G 13369187-A-G BY157836 YY+**
24493075-C-T 22346928-C-T BY158639 ++
3448944-A-T 3580903-A-T *
10993235-C-T **
10993222-CTATTT-C **
10993202-GCATTC-G **
13461045-A-G 11305369-A-G **
10993197-T-C **
10993240-T-C **
10983452-A-C **
10974389-C-T **
10974384-A-T **
10974347-A-C **
10993170-C-T **
10993257-C-G **
10993241-T-C **
10947470-T-A **
10993260-C-T **
10993275-A-C **
10993276-A-T **
10996766-T-A **
10996783-C-A **
11018553-C-T **
11019361-C-A **
11019379-C-A **
11026050-C-CTCTATCCTGTTCCAT **
11028156-A-G **
13527083-T-A 11371407-T-A **
13697776-A-C 11542100-A-C **
10947481-A-C **
10940497-A-T **
10947468-C-A **
9974258-A-C 10136649-A-C **
3680073-C-A 3812032-C-A **
3883398-G-T 4015357-G-T **
4076155-G-T 4208114-G-T **
4811594-C-A 4943553-C-A **
5267104-TA-T 5399063-TA-T **
5999516-A-G 6131475-A-G **
6069200-G-T 6201159-G-T **
6516261-G-T 6648220-G-T **
7282282-G-C 7414241-G-C **
7713283-A-G 7845242-A-G **
9416947-C-A 9579338-C-A **
9764187-C-A 9926578-C-A **
9888370-A-C 10050761-A-C **
10770531-T-TCAAA **
10947454-T-G **
10784595-G-T **
10792548-TATTCC-T **
10794199-C-T **
10797839-T-C **
10804407-T-C **
10814886-C-A **
10841979-C-T **
10851884-A-C **
10856649-C-T **
10860890-C-T **
10873142-G-GCAATCATTTA **
10885799-C-A **
10937499-C-G **
11675432-G-C **
11672970-T-C **
15138171-T-C 13026258-T-C **
14047600-CTTT-C 11926894-CTTT-C 15×T**
13453375-A-C 11297699-A-C **
22857306-A-G 20695420-A-G **
22857814-C-T 20695928-C-T **
25200994-GAAAGA-G 23054847-GAAAGA-G g1 **
25980189-ATAATAAT-A 23834042-ATAATAAT-A P1_Y1 **
58848091-A-G 56742780-T-C **
28157448-G-T 26011301-G-T P1_b4 **
28499312-G-T 26353165-G-T **
56840000-A-G **
56847595-G-C **
13453393-C-G 11297717-C-G **
19949634-G-T 17837754-G-T P5_Prx **
22241625-C-A 20079739-C-A DYZ19 **
17654092-A-C 15542212-A-C CTS7772 M2064 **
22587868-C-A 20425982-C-A **
18511195-CAA-C 16399315-CAA-C P6_Dst 30×A**
4894092-T-C 5026051-T-C **
6216030-CT-C 6347989-CT-C IR3_Dst **
13319933-T-C 11164257-T-C **
17338477-G-C 15226597-G-C **
17989583-C-CAT 15877703-C-CAT P7_Prx **
18345955-C-CATAA 16234075-C-CATAA P6_Prx **
3550572-CTCA-C 3682531-CTCA-C **
19588064-G-T 17476184-G-T P5_Prx **
19912786-T-G 17800906-T-G P5_Prx **
20782282-A-T 18620396-A-T P4_Prx **
58985853-C-A 56839706-C-A **
26379410-CCA-C 24233263-CCA-C P1_Y1 **
22683533-A-C 20521647-A-C **
22277567-T-C 20115681-T-C DYZ19 **
14352239-T-C 12231534-T-C **
18942986-T-C 16831106-T-C **
14530477-C-A 12418678-C-A **
14537729-G-A 12425930-G-A **
3010939-C-A 3142898-C-A **
15138172-C-T 13026259-C-T **
15169899-G-T 13057985-G-T **
15803524-G-A 13691644-G-A **
16007883-A-T 13896003-A-T **
16063408-T-C 13951528-T-C **
16104328-T-A 13992448-T-A P8_Prx **
16323547-C-A 14211667-C-A **
16341150-A-C 14229270-A-C **
16981462-T-A 14869582-T-A **
17083844-C-A 14971964-C-A **
19248229-A-T 17136349-A-T **
22277566-A-C 20115680-A-C DYZ19 **
19524608-G-A 17412728-G-A **
19730867-G-A 17618987-G-A P5_Prx **
20370152-C-A 18208266-C-A P5_Dst **
20579246-ACC-A 18417360-ACC-A P5_Dst **
20626074-A-C 18464188-A-C P4_Prx **
20700675-AAC-A 18538789-AAC-A P4_Prx **
20700695-A-G 18538809-A-G P4_Prx **
20700699-A-G 18538813-A-G P4_Prx **
20703013-T-TGA 18541127-T-TGA P4_Prx **
22171191-A-C 20009305-A-C **
22241644-A-G 20079758-A-G DYZ19 **
22277558-A-C 20115672-A-C DYZ19 **
22277565-A-C 20115679-A-C DYZ19 **
3532085-A-C 3664044-A-C **
5777926-T-C 5909885-T-C **
20700644-C-A 18538758-C-A P4_Prx 8×CA**
17425096-T-G 15313216-T-G **
11007304-C-A **
10813679-C-A **
14351426-C-A 12230721-C-A **
10803651-A-C **
10796111-C-A **
22022732-C-A 19860846-C-A **
11028159-C-T **
17196545-CGAAGGAAG-C 15084665-CGAAGGAAG-C 12×GAAG**
11003976-T-A **
13453344-C-A 11297668-C-A **
10987381-C-A **
3845140-TG-T 3977099-TG-T 11×G**
25466513-C-CAA 23320366-C-CAA P2_r2 26×A**
10845645-C-T **
5775600-C-A 5907559-C-A **
9030390-A-G 9192781-A-G **
10979390-TTCCAC-T **
10974362-C-T **
10947431-A-C **
20840711-CA-C 18678825-CA-C P4_Gap 8×A**
22963657-C-A 20801771-C-A **
10961379-C-A **
4201148-C-A 4333107-C-A **
10996759-C-A **
6264483-T-TC 6396442-T-TC IR3_Dst **
21587973-G-T 19426087-G-T **
13213962-A-T 11058286-A-T **
10873107-C-G **
13461103-A-T 11305427-A-T **
13364146-CAA-C 11208470-CAA-C 26×A**
14639064-C-A 12527133-C-A 18×T**
14741989-G-T 12630057-G-T **
4442961-C-A 4574920-C-A **
20510996-C-A 18349110-C-A P5_Dst **
10767912-A-T **
10992852-C-A **
10663437-C-T **
10785259-G-CCGCCA **
23831361-G-A 21669475-G-A **
13461066-GC-G 11305390-GC-G **
5603678-C-A 5735637-C-A **
27847759-TG-T 25701612-TG-T P1_Y2 **
23377572-C-A 21215686-C-A **
13453370-A-T 11297694-A-T **
11003972-T-C **
7242577-C-A 7374536-C-A **
14128247-C-A 12007541-C-A **
9121604-C-A **
10754954-T-C **
10764594-C-T **
10764607-T-C **
10764617-C-A **
10688093-C-A **
13453338-C-T 11297662-C-T **
17666550-C-A 15554670-C-A **
19647571-CT-C 17535691-CT-C P5_Prx 16×T**
11643776-A-T **
11018562-A-C **
3734905-C-A 3866864-C-A **
10873109-A-T **
10873130-T-C **
11649583-C-A **
13453339-C-CGGATG 11297663-C-CGGATG **
10992896-A-T **
10794201-T-C **
11018554-A-G **
11018558-A-G **
11018568-G-C **
10687512-C-G **
19842271-A-G 17730391-A-G P5_Prx **
10973623-G-T **
10873079-A-T **
10947464-T-C **
10947472-T-C **
26199614-TG-T 24053467-TG-T P1_Y1 **
10773701-A-G **
10873108-C-A **
10808773-T-C **
10878239-GATTCCATTCC-G **
10992871-CCATTT-C **
10992868-A-C **
2885479-G-T 3017438-G-T **
19732418-C-T 17620538-C-T BY211927 P5_Prx **
19948088-A-T 17836208-A-T P5_Prx **
10901675-TCCTTC-T **
18174686-GTA-G 16062806-GTA-G **
24485675-C-CTTT 22339528-C-CTTT 15×T**
10947514-A-C **
10756274-A-T **
7154843-G-T 7286802-G-T **
28091461-CA-C 25945314-CA-C P1_Y2 **
13453353-C-A 11297677-C-A **
6750273-C-T 6882232-C-T **
6752000-C-A 6883959-C-A **
10993190-A-T **
20013068-G-T 17901188-G-T P5_Prx **
5800003-C-A 5931962-C-A ***
11007591-T-A ***
9042265-C-A 9204656-C-A ***
23556204-TAA-T 21394318-TAA-T 12×A***
16071730-ATTTTT-A 13959850-ATTTTT-A 17×T***
56829260-A-C ***
15559196-C-A 13447316-C-A ***
5400490-C-T 5532449-C-T 9×T***
13257287-ATAT-A,AT 11101611-ATAT-A,AT ***
17419439-ATTTTT-A 15307559-ATTTTT-A 25×T***
21180074-CA-C 19018188-CA-C 10×A***
11007587-C-T ***
11014415-T-A ***
23070772-CTT-C 20908886-CTT-C 29×T***
23025229-CAAAA-C 20863343-CAAAA-C 29×A***
2649802-CAAAA-C 2781761-CAAAA-C 24×A***
11007504-T-A ***
10838683-C-A ***
14272686-CTTT-C 12151980-CTTT-C 15×T***
11007557-C-A ***
8907673-A-ATG,ATGTG 9039632-A-ATG,ATGTG 18×TG***
6444836-C-CTATA 6576795-C-CTATA 12×TA***
11014417-C-A ***
9859192-CAAAA-C 10021583-CAAAA-C 17×A***
18929039-T-C 16817159-T-C ***
5829456-T-TA 5961415-T-TA 13×A***
27756417-A-AT 25610270-A-AT P1_Y2 9×T***
14391874-TAAA-T,TAA 12271170-TAAA-T,TAA 15×A***
10914468-G-A ***
28805892-G-A 26659745-G-A ***
21425339-CTTTTT-C,CTTT 19263453-CTTTTT-C,CTTT 24×T***
21934980-ATTT-A,AT 19773094-ATTT-A,AT 17×T***
21698435-G-A 19536549-G-A ***
21853740-C-T 19691854-C-T BY7859 ***
2783642-GAA-G,GA 2915601-GAA-G,GA 15×A***
11007505-T-C ***
11007598-G-T ***
19389717-TAA-T,TA 17277837-TAA-T,TA 17×A***
15947951-CTTTTT-C,CTTTT 13836071-CTTTTT-C,CTTTT 19×T***
24877503-CTTTTTTT-C 22731356-CTTTTTTT-C g1 23×T***
11007540-C-T ***
13547016-CT-C 11391340-CT-C 10×T***
11007596-G-T ***
14473738-CAA-C,CA 12353007-CAA-C,CA 14×A***
10661999-G-C ***
13931739-CTT-C 11811033-CTT-C 22×T***
28076522-CCTTTCTTTCTTTCTTT-C,CCTTT 25930375-CCTTTCTTTCTTTCTTT-C,CCTTT P1_Y2 13×CTTT***
17816063-TTATATATATA-T 15704183-TTATATATATA-T 17×TA***
9519997-C-A 9682388-C-A ***
10943355-C-A ***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.

Age Analysis Information (work in progress)

AllMcDonaldYFull
Kit: 50748980999679798167852700
Kit: 507481443612190946508140125
Used in age calculations1443612190946508140125
Counts of SNPs33
Variant counts last updated 2019-06-17 00:17:55.



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