Tree Position

R-P312/S116 > Z40481 > ZZ11 > U152/S28 > L2/S139 > Z41150 > Z49 > A21822 > S8183 > Y4356 > Y4354 > Y4355

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19) POS-REF-ALT (hg38) Blocks Names Region McDonald BED combBED STRBigY2
B155206
28817737-T-G 26671590-T-G A*
26062501-T-C 23916354-T-C P1_Y1 A*
20054443-G-A 17942563-G-A P5_Prx A*
19730048-G-C 17618168-G-C P5_Prx A*
19579304-C-G 17467424-C-G P5_Prx YA*
22227289-C-G 20065403-C-G DYZ19 A*
22252797-G-C 20090911-G-C DYZ19 A*
22307701-G-C 20145815-G-C DYZ19 A*
22438956-T-A 20277070-T-A DYZ19 A*
6295131-A-G 6427090-A-G IR3_Dst A*
24305240-G-A 22159093-G-A P3_t1 A*
25875986-C-T 23729839-C-T P1_Y1 A*
23714936-C-T 21553050-C-T A*
26073760-A-G 23927613-A-G P1_Y1 A*
26114695-C-T 23968548-C-T P1_Y1 A*
25897806-G-A 23751659-G-A P1_Y1 A*
20729147-T-C 18567261-T-C P4_Prx A*
15394074-G-T 13282194-G-T BY163627 YY+
18239989-GGGCA-G 16128109-GGGCA-G +
8569636-C-T 8701595-C-T BY164359 YY+
8231049-A-G 8363008-A-G BY164323 YY+
2710704-G-T 2842663-G-T BY164153 YY+
11656060-G-A BY211382 +
8155782-G-A 8287741-G-A BY164316 YY+
19194890-T-A 17083010-T-A BY163884 YY+
18239999-TCTC-T 16128119-TCTC-T +
18240000-C-G 16128120-C-G BY163825 Y+
18239995-A-ATCC 16128115-A-ATCC +
15340879-G-T 13228998-G-T BY163624 YY+
15032215-C-T 12920303-C-T SK1263 S2524 V2774 YY+
14202205-A-T 12081499-A-T BY163542 YY+
15031389-A-C 12919477-A-C BY163602 YY+
14319611-G-A 12198905-G-A BY163548 YY+
14369114-C-T 12248410-C-T BY163556 YY+
17602640-A-G 15490760-A-G BY163777 YY+
17420468-A-G 15308588-A-G BY163763 YY+
14904479-G-A 12792546-G-A YY+
16338756-T-C 14226876-T-C YY+
20823703-A-G 18661817-A-G BY212652 P4_Gap +
16253892-G-A 14142012-G-A BY163695 YY+
18082732-G-A 15970852-G-A BY163813 YY+
19034414-T-G 16922534-T-G BY163874 YY+
8895329-G-T 9027288-G-T BY164389 Y+
23208038-G-T 21046152-G-T BY164076 Y+
8901909-A-G 9033868-A-G BY164390 Y+
22079301-C-T 19917415-C-T BY164011 YY+
22562563-CAAATAAATAAAT-C 20400677-CAAATAAATAAAT-C 9×AAAT+
23991923-G-A 21845776-G-A Y+
21717249-A-G 19555363-A-G BY163983 YY+
21221589-T-C 19059703-T-C BY163943 YY+
23438450-A-AT 21276564-A-AT +
9408320-A-G 9570711-A-G BY164418 YY+
9876779-A-G 10039170-A-G BY163499 YY+
22254429-G-C 20092543-G-C DYZ19 *
10821451-CTTT-C **
10826509-A-T **
11026441-T-A **
10821447-CAT-C **
10821444-T-C **
11026449-A-T **
11026480-C-T **
11026487-A-C **
11026447-T-C **
10814803-C-A **
11030675-TCCACTA-T **
10818574-CACTCT-C **
10998226-C-A **
11030685-T-TC **
10813408-C-A **
11033807-A-T **
11033816-C-A **
10797196-A-T **
13223714-G-T 11068038-G-T **
13227253-AA-C 11071577-AA-C **
10797187-C-G **
13276757-C-A 11121081-C-A **
13484967-C-T 11329291-C-T **
10796682-C-CCCTGCATTCGAGTTG **
11010964-G-C **
10971345-C-A **
10997321-C-G **
10927010-C-A **
10893169-C-T **
10889888-T-G **
10860572-C-A **
10893282-T-C **
10895862-A-AGTGTT **
10923897-A-ATTC **
13595556-C-A 11439880-C-A **
10923901-T-TCC **
10839722-C-A **
10826567-T-G **
10826557-A-ATT **
10929654-G-GTCCAC **
10992246-C-T **
10929741-CCACT-C **
10929748-AT-A **
10826554-T-TTAA **
10933478-T-G **
10944947-A-G **
10950690-T-C **
10953678-A-C **
10959090-C-A **
10964910-G-T **
10971367-A-C **
10986384-CA-C **
10826524-G-A **
13484970-T-C 11329294-T-C **
15402881-C-T 13291001-C-T **
13605636-T-C 11449960-T-C **
22170231-G-T 20008345-G-T **
19052438-A-T 16940558-A-T **
19073722-C-A 16961842-C-A **
19356244-T-C 17244364-T-C **
20432863-T-TAA 18270977-T-TAA P5_Dst 13×AC**
20495597-T-A 18333711-T-A P5_Dst **
20495646-C-A 18333760-C-A P5_Dst **
21015038-T-G 18853152-T-G P4_Dst **
21394609-C-A 19232723-C-A **
21433690-T-A 19271804-T-A **
21863719-C-A 19701833-C-A **
21911064-T-G 19749178-T-G **
22155575-T-C 19993689-T-C **
22172914-T-C 20011028-T-C **
18154322-A-T 16042442-A-T **
22489472-C-A 20327586-C-A DYZ19 **
22963645-T-C 20801759-T-C **
21751086-A-G **
23997466-C-A 21851319-C-A **
27810273-AAAGGAAGGAAGGAAGGAAGGAAGG-A 25664126-AAAGGAAGGAAGGAAGGAAGGAAGG-A P1_Y2 16×AAGG**
27971619-A-G 25825472-A-G P1_Y2 **
28157462-G-C 26011315-G-C P1_b4 **
28533924-C-A 26387777-C-A **
28606052-C-T 26459905-C-T **
28761654-G-A 26615507-G-A **
28764955-A-G 26618808-A-G **
28806068-G-T 26659921-G-T **
28806071-C-T 26659924-C-T **
18750203-C-T 16638323-C-T **
18086725-A-G 15974845-A-G **
13625903-T-G 11470227-T-G **
15495167-C-CAAA 13383287-C-CAAA 14×A**
11644480-A-G **
11646358-GAGC-G **
11676480-T-C **
13858245-G-T 11737539-G-T **
13950066-G-T 11829360-G-T **
14123938-G-T 12003232-G-T **
14294097-A-T 12173391-A-T **
14550747-A-C 12438948-A-C **
14571182-A-T 12459382-A-T **
14760955-C-A 12649024-C-A **
14871250-C-A 12759320-C-A **
10790731-C-A **
15769500-G-C 13657620-G-C **
17648337-G-A 15536457-G-A **
15967495-C-A 13855615-C-A **
16000914-T-C 13889034-T-C **
16060391-C-A 13948511-C-A **
16288127-TA-T 14176247-TA-T **
16305816-T-C 14193936-T-C **
16305886-C-T 14194006-C-T **
16598714-C-A 14486834-C-A **
16701619-G-A 14589739-G-A **
16704894-G-T 14593014-G-T **
17081293-AT-A 14969413-AT-A **
17095312-G-C 14983432-G-C **
17276187-G-A 15164307-G-A **
17464754-G-T 15352874-G-T **
10796647-C-CGGATG **
10763701-C-T **
10767003-C-A **
13484960-C-G 11329284-C-G **
3535932-T-G 3667891-T-G **
10945178-C-A **
13698803-G-T 11543127-G-T **
4302808-C-A 4434767-C-A **
10692553-T-A **
15179190-C-A 13067276-C-A **
26908707-G-T 24762560-G-T P1_r3 **
13952559-C-A 11831853-C-A **
18955819-G-GA 16843939-G-GA 9×A**
9427920-C-T 9590311-C-T **
8181396-C-T 8313355-C-T **
10778041-G-T **
3329206-C-A 3461165-C-A **
14549154-C-A 12437355-C-A **
17376643-G-T 15264763-G-T **
5274350-C-T 5406309-C-T **
2812774-A-T 2944733-A-T **
6731323-C-A 6863282-C-A **
14198390-C-A 12077684-C-A **
6514300-C-A 6646259-C-A **
25990712-G-T 23844565-G-T P1_Y1 **
10764881-C-A **
7038379-C-A 7170338-C-A **
10028194-C-T 10190585-C-T **
21187577-C-A 19025691-C-A **
14693779-C-A 12581845-C-A **
10664773-CCCATTCCATTCCATTCCATTCCATTCCATTCCATTCCATT-C **
16305826-G-A 14193946-G-A **
3286602-C-A 3418561-C-A **
23126279-C-A 20964393-C-A **
23262686-C-A 21100800-C-A **
23397143-C-A 21235257-C-A **
6367534-G-T 6499493-G-T **
11021289-C-A **
23062335-C-A 20900449-C-A **
10955090-A-C FGC79112 **
5059457-T-TA 5191416-T-TA 9×A**
9076016-C-A 9238407-C-A **
16305880-C-A 14194000-C-A **
24206170-G-T 22060023-G-T P3_b1 **
10801367-C-A **
24206180-C-A 22060033-C-A P3_b1 **
16297379-G-T 14185499-G-T **
16297388-C-A 14185508-C-A **
21238354-C-A 19076468-C-A **
21015094-GA-G 18853208-GA-G P4_Dst **
23005486-C-A 20843600-C-A **
14871240-C-A 12759310-C-A **
18253326-C-A 16141446-C-A **
20993599-A-AG 18831713-A-AG P4_Dst **
18189717-C-A 16077837-C-A **
6901259-C-A 7033218-C-A **
9932089-A-T 10094480-A-T Z7204 **
26730201-AAAAGAAAGAAAGAAAG-A 24584054-AAAAGAAAGAAAGAAAG-A P1_g2 18×AAAG**
10018091-C-A 10180482-C-A **
6205625-A-G 6337584-A-G BY59463 IR3_Dst **
3560092-C-A 3692051-C-A **
10932580-T-A **
10923905-T-C **
4222470-C-A 4354429-C-A **
7099208-C-A 7231167-C-A **
21754017-C-A **
28633691-C-A 26487544-C-A **
17779517-C-A 15667637-C-A **
10692539-T-C **
10666278-C-A **
7502027-G-T 7633986-G-T IR1_L **
10645878-T-C **
10992241-C-T **
11026479-C-T **
10909696-G-T **
21134925-ATTTTTT-A 18973039-ATTTTTT-A 22×T**
14933746-C-A 12821811-C-A **
13227239-A-G 11071563-A-G **
11672681-C-A **
15131971-C-A 13020058-C-A **
10937343-C-A **
7201575-TCCA-T 7333534-TCCA-T **
7259007-T-C 7390966-T-C **
7228292-C-A 7360251-C-A **
7201597-TGCCCATCTCCTCTAC-T 7333556-TGCCCATCTCCTCTAC-T **
7201592-C-T 7333551-C-T **
7201587-C-T 7333546-C-T **
7201582-C-T 7333541-C-T **
7201565-TCCCC-T 7333524-TCCCC-T **
8296710-C-A 8428669-C-A **
7201557-TCCAC-T 7333516-TCCAC-T **
7142637-C-A 7274596-C-A **
7043710-G-T 7175669-G-T **
6901585-A-C 7033544-A-C **
2684470-C-A 2816429-C-A **
6514401-G-A 6646360-G-A **
6514341-G-A 6646300-G-A **
8135636-C-A 8267595-C-A **
8985430-A-T 9147821-A-T **
5846610-G-A 5978569-G-A **
10692551-C-CTACCA **
19437929-G-C 17326049-G-C CTS10404 M4885 **
10762119-G-T **
10759108-C-T **
10758697-G-T **
10753947-C-T **
10692556-C-A **
10692548-A-G **
9063633-A-G 9226024-A-G **
10673721-T-C **
10672260-G-T **
10660388-C-A **
10001566-C-T 10163957-C-T **
9531237-T-A 9693628-T-A IR3_Prx **
9531228-AG-A 9693619-AG-A IR3_Prx **
9531225-CTT-C 9693616-CTT-C IR3_Prx **
6361022-T-C 6492981-T-C **
6831870-C-A 6963829-C-A **
5720793-T-C 5852752-T-C **
3986258-C-A 4118217-C-A **
21886016-C-A 19724130-C-A **
22146342-C-A 19984456-C-A **
56828229-G-C **
17074841-G-A 14962961-G-A **
3330360-C-A 3462319-C-A **
56825647-G-T **
2699746-G-A 2831705-G-A **
2772537-A-G 2904496-A-G **
3005883-C-A 3137842-C-A **
3109201-G-T 3241160-G-T **
5598584-G-T 5730543-G-T FT64848 **
3264987-G-A 3396946-G-A **
3546423-T-C 3678382-T-C **
3893338-G-T 4025297-G-T **
3165126-C-G 3297085-C-G **
4900191-AT-A 5032150-AT-A **
5393472-T-C 5525431-T-C **
4582317-C-A 4714276-C-A **
4473179-A-G 4605138-A-G **
4461406-C-A 4593365-C-A **
3990813-C-A 4122772-C-A **
5522884-C-G 5654843-C-G **
28608023-C-A 26461876-C-A ***
18621541-C-A 16509661-C-A ***
10753030-C-A ***
10987856-TTCCATTCCACTCCACTCCATTCCATTCCAT-T,TTCCAATCTACTCCATCTCATTCCTTTCCAC ***
10817730-C-T ***
14090914-C-A 11970208-C-A ***
19303653-C-A 17191773-C-A ***
14025562-A-AAAAG,AAAAGAAAG 11904856-A-AAAAG,AAAAGAAAG 12×AAAG***
26440502-G-T 24294355-G-T P1_Y1 ***
10689047-CCAT-C,CCA ***
28800246-G-T 26654099-G-T ***
10771019-C-A ***
15823516-C-A 13711636-C-A ***
5335514-G-A 5467473-G-A ***
10744325-C-G ***
11035359-C-CAT ***
21329488-C-A 19167602-C-A ***
10845667-C-G,T ***
10689044-A-ACTG ***
10689058-C-A ***
7868971-C-T 8000930-C-T ***
7742927-A-C 7874886-A-C ***
14459948-C-A 12339221-C-A ***
10847366-C-A ***
10753045-A-T ***
13454237-C-CACACT 11298561-C-CACACT ***
11035356-C-CTGT ***
13654415-C-A 11498739-C-A ***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.

Age Analysis Information (work in progress)

AllMcDonaldYFull
Kit: B155206985750480327707915370
Used in age calculations985750480327707915370
Counts of SNPs2628
Variant counts last updated 2019-09-27 02:44:53.



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