Tree Position

R-P312/S116 > Z290 > L21/S145 > DF13 > ZZ10 > Z253 > Z2534 > ZZ5 > Z2185 > BY44331 > Z2186 > L1066 > BY2707

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19) POS-REF-ALT (hg38) Blocks Names Region McDonald BED combBED STRBigY2
AM12840
22286138-G-T 20124252-G-T DYZ19 A*
6177987-T-C 6309946-T-C IR3_Dst A*
22234545-C-A 20072659-C-A BY20168 DYZ19 A*
20789088-G-A 18627202-G-A P4_Prx A*
22234462-G-T 20072576-G-T DYZ19 A*
20047016-C-T 17935136-C-T P5_Prx A*
19719277-C-T 17607397-C-T P5_Prx A*
22291573-G-T 20129687-G-T DYZ19 A*
19701125-C-T 17589245-C-T P5_Prx A*
6634585-T-A 6766544-T-A BY152431 YY+
8782712-G-A 8914671-G-A BY153036 YY+
22469692-G-T 20307806-G-T DYZ19 +
8737639-G-A 8869598-G-A BY153020 YY+
18653858-T-C 16541978-T-C BY154684 YY+
22442141-G-T 20280255-G-T BY219059 DYZ19 +
23163924-G-T 21002038-G-T BY155541 Y+
22201275-T-C 20039389-T-C BY155219 YY+
8465848-C-A 8597807-C-A BY156010 YY+
8364767-A-G 8496726-A-G BY152894 YY+
19033451-A-AT 16921571-A-AT +
23637772-G-A 21475886-G-A BY146945 Y+
18814132-T-C 16702252-T-C BY154717 YY+
16760755-G-C 14648875-G-C BY154204 YY+
14037859-C-T 11917153-C-T BY153510 YY+
14026694-GA-G 11905988-GA-G +
15097524-A-G 12985612-A-G BY153805 YY+
15451930-C-T 13340050-C-T BY153867 YY+
15536066-T-C 13424186-T-C BY153895 YY+
15769928-A-G 13658048-A-G BY153971 YY+
16770264-C-G 14658384-C-G BY154209 YY+
21397369-A-G 19235483-A-G BY155019 YY+
17050931-C-T 14939051-C-T BY154282 YY+
17368116-A-G 15256236-A-G YY+
24454728-C-T 22308581-C-T BY155762 Y+
18128319-A-G 16016439-A-G BY154582 YY+
23762548-A-G 21600662-A-G BY155686 Y+
23732118-G-C 21570232-G-C BY155674 +
21364005-C-A 19202119-C-A BY155014 YY+
19261335-T-TGA 17149455-T-TGA 8×GA*
21073720-T-TAC 18911834-T-TAC 11×AC*
22241337-G-T 20079451-G-T DYZ19 *
19261335-T-A 17149455-T-A Z26671 YY8×GA*
19358849-TTCTA-T 17246969-TTCTA-T 10×TCTA*
22302001-G-T 20140115-G-T DYZ19 *
7434925-A-G 7566884-A-G **
4407224-G-T 4539183-G-T **
10984333-C-G **
10984305-G-A **
4444508-A-T 4576467-A-T **
10984290-C-T **
10932879-C-G **
10909849-C-T **
11037439-C-A **
10894530-C-A **
10886590-C-T **
10839079-G-GAAC **
10839072-T-G **
10839052-T-G **
10838494-C-A **
10810660-C-G **
11021694-C-T **
13253525-A-T 11097849-A-T **
13199127-C-A 11043451-C-A **
14016346-GA-G 11895640-GA-G **
14368002-G-A 12247298-G-A **
14356210-A-T 12235505-A-T **
14284589-G-T 12163883-G-T **
14149527-G-C 12028821-G-C **
3970584-C-A 4102543-C-A **
4403068-C-A 4535027-C-A **
14000242-G-A 11879536-G-A **
13233338-A-C 11077662-A-C **
13976436-C-A 11855730-C-A **
13959193-C-A 11838487-C-A **
13929764-G-A 11809058-G-A **
13556767-C-A 11401091-C-A **
13398977-G-T 11243301-G-T **
10804951-T-A **
10807178-C-A **
4731403-G-A 4863362-G-A **
10804945-A-G **
8694247-G-T 8826206-G-T **
6347505-G-T 6479464-G-T **
6427047-A-C 6559006-A-C **
6593230-C-A 6725189-C-A **
8824088-C-A 8956047-C-A **
6666384-C-A 6798343-C-A **
6675917-C-G 6807876-C-G **
6892940-C-A 7024899-C-A **
9457230-A-G 9619621-A-G **
6922639-T-C 7054598-T-C **
7107427-G-T 7239386-G-T **
8261164-C-A 8393123-C-A **
8095525-A-G 8227484-A-G **
8069205-G-A 8201164-G-A **
7179888-C-A 7311847-C-A **
7380111-G-T 7512070-G-T **
14447120-C-A 12326393-C-A **
9810877-A-G 9973268-A-G **
7867955-G-A 7999914-G-A **
10763326-T-TCCTCC **
5171397-T-C 5303356-T-C **
5393362-C-T 5525321-C-T 10×GGA**
10804921-AATCCTTTCC-A **
10763396-T-C **
10763374-C-G **
5977047-T-G 6109006-T-G **
10763351-AC-A **
10763310-C-T **
9926794-G-T 10089185-G-T **
10760329-C-G **
10684441-C-A **
10684305-C-A **
10678680-T-C **
10651911-T-A **
6240876-T-A 6372835-T-A IR3_Dst **
10033928-G-A 10196319-G-A **
14379084-T-A 12258380-T-A **
15469251-T-G 13357371-T-G **
14485327-T-C 12364596-T-C **
20713316-A-C 18551430-A-C P4_Prx **
21648210-C-A 19486324-C-A **
21455377-A-G 19293491-A-G **
21360453-C-A 19198567-C-A **
21268825-G-T 19106939-G-T **
21095140-C-A 18933254-C-A **
21094117-A-C 18932231-A-C **
21091374-C-A 18929488-C-A **
19557610-C-G 17445730-C-G **
21963528-G-A 19801642-G-A **
19475206-C-A 17363326-C-A **
19411162-A-G 17299282-A-G **
18648570-G-A 16536690-G-A **
18615957-TTTG-T 16504077-TTTG-T **
18528036-A-C 16416156-A-C P6_Dst **
18384477-A-T 16272597-A-T P6_Gap **
18086218-A-G 15974338-A-G **
18085643-G-T 15973763-G-T **
21895384-T-C 19733498-T-C **
22041578-A-T 19879692-A-T **
18042951-G-A 15931071-G-A **
24502381-G-T 22356234-G-T **
28649327-TGAAATCTAG-T 26503180-TGAAATCTAG-T **
28627257-G-T 26481110-G-T **
28600587-G-T 26454440-G-T **
28590558-CT-C 26444411-CT-C **
28478815-A-G 26332668-A-G **
25960806-A-T 23814659-A-T P1_Y1 **
24503074-G-A 22356927-G-A **
24492410-T-A 22346263-T-A **
22125619-G-T 19963733-G-T **
21766276-C-CTATCATT **
23380459-A-G 21218573-A-G **
22996070-AT-A 20834184-AT-A **
22965319-A-G 20803433-A-G **
22833876-A-AT 20671990-A-AT **
22473989-G-T 20312103-G-T DYZ19 **
22460876-T-G 20298990-T-G DYZ19 **
22203355-C-A 20041469-C-A **
18050752-TCTCTGGTA-T 15938872-TCTCTGGTA-T **
17951299-ATTTTTTTTTT-A 15839419-ATTTTTTTTTT-A 25×T**
14540846-G-T 12429047-G-T **
15282560-C-A 13170659-C-A **
15469268-T-TA 13357388-T-TA **
15469259-TG-A 13357379-TG-A **
2972810-T-A 3104769-T-A **
15469248-T-A 13357368-T-A **
15469240-G-T 13357360-G-T **
15401967-C-A 13290087-C-A **
15373390-T-G 13261510-T-G **
15259165-G-A 13147249-G-A **
15485388-C-A 13373508-C-A **
15201522-T-G 13089608-T-G **
15059879-T-A 12947971-T-A **
15059869-A-T 12947961-A-T **
14965451-C-T 12853526-C-T **
14951457-C-A 12839531-C-A **
14908259-G-T 12796326-G-T **
14696911-A-G 12584977-A-G **
14622089-T-C 12510287-T-C **
15477744-AATTT-A 13365864-AATTT-A 4×ATTT**
15608183-T-C 13496303-T-C **
17668403-C-A 15556523-C-A **
16319435-C-A 14207555-C-A **
17425058-G-T 15313178-G-T **
17387520-C-A 15275640-C-A **
17365518-C-A 15253638-C-A **
17235429-C-A 15123549-C-A **
17097398-C-T 14985518-C-T **
16757207-C-A 14645327-C-A **
16694329-T-C 14582449-T-C **
16549582-C-A 14437702-C-A **
16308222-C-A 14196342-C-A **
15611920-C-A 13500040-C-A **
16223630-G-C 14111750-G-C **
16186525-T-C 14074645-T-C **
16056216-C-A 13944336-C-A **
16045323-CA-C 13933443-CA-C **
15971743-T-G 13859863-T-G **
15926624-G-T 13814744-G-T **
15916572-C-A 13804692-C-A **
15775557-C-T 13663677-C-T **
3603327-C-A 3735286-C-A **
7093671-A-G 7225630-A-G **
56879915-C-A **
23259242-G-T 21097356-G-T **
10763369-C-T **
15221712-A-AT 13109798-A-AT 9×T**
6593680-C-A 6725639-C-A **
10932882-C-T **
7777100-C-A 7909059-C-A **
10932884-T-G **
14445235-G-T 12324508-G-T **
11006119-C-A **
10935633-A-C **
4871870-C-A 5003829-C-A **
18707189-C-A 16595309-C-A **
21389841-G-A 19227955-G-A **
10661654-C-T **
10761139-A-T **
10761152-C-T **
19261152-G-T 17149272-G-T **
13217136-C-A 11061460-C-A **
10764545-ATT-A **
18955857-T-TA 16843977-T-TA 10×A**
5274384-C-A 5406343-C-A **
3721332-C-A 3853291-C-A **
10983070-A-C BY172979FT48473 **
18871633-GAGAAAGAA-G 16759753-GAGAAAGAA-G 8×AGAA**
10769824-G-T **
21905331-G-T 19743445-G-T **
14504656-A-C 12392861-A-C **
56841436-C-A **
19258829-C-A 17146949-C-A **
14888137-C-A 12776203-C-A **
10895893-T-C **
10895895-G-C **
10895901-A-C **
10895902-G-A **
10763288-T-G **
10895908-C-A **
14270687-C-A 12149981-C-A **
17572143-C-A 15460263-C-A **
10761162-C-G **
4326502-C-A 4458461-C-A **
7714071-C-A 7846030-C-A **
10747042-C-A **
14558033-T-G 12446234-T-G **
56685626-T-A **
28519082-C-A 26372935-C-A **
10785283-C-A **
11018952-C-A **
10678687-T-C **
16823945-C-A 14712065-C-A **
3285033-G-T 3416992-G-T **
10969273-T-C **
17596395-T-TAA 15484515-T-TAA 15×A**
15683686-C-A 13571806-C-A **
19187709-G-A 17075829-G-A **
10841991-T-G **
10841978-C-G **
10841963-C-G **
10984301-G-C **
5675345-G-T 5807304-G-T **
22659402-C-A 20497516-C-A **
10868504-C-T **
15469241-A-G 13357361-A-G **
10683381-A-G **
10789172-C-A **
10764552-C-A **
22974297-C-A 20812411-C-A **
10801537-C-A **
10763342-C-T **
18365608-T-A 16253728-T-A P6_Prx **
3994894-C-A 4126853-C-A **
11014649-C-T **
5458720-C-A 5590679-C-A **
19187704-C-T 17075824-C-T **
10678625-T-C **
10885077-C-A **
10847949-C-A **
13253520-C-G 11097844-C-G **
11014663-C-G **
11014662-T-C **
6920620-C-A 7052579-C-A **
22809532-C-A 20647646-C-A **
8100487-A-C 8232446-A-C **
16278595-C-A 14166715-C-A **
13466271-G-C 11310595-G-C **
11032514-C-A **
24870878-T-G 22724731-T-G P3_b2 **
3951433-C-A 4083392-C-A **
27155002-T-G 25008855-T-G P1_g3 **
8046360-C-A 8178319-C-A **
10751158-C-T **
22445706-C-T 20283820-C-T BY197914 DYZ19 **
10686412-C-A **
10957882-C-A **
7155362-C-A 7287321-C-A **
10848183-G-T **
16434650-C-A 14322770-C-A **
10994703-C-A **
16665753-C-A 14553873-C-A **
16354394-G-GT 14242514-G-GT 9×T**
13466351-CAA-C 11310675-CAA-C **
10926672-C-A **
7222627-C-A 7354586-C-A **
2813741-G-T 2945700-G-T **
2758215-A-G 2890174-A-G **
2695591-A-G 2827550-A-G **
2695543-T-C 2827502-T-C **
9038166-C-A 9200557-C-A **
6867549-C-A 6999508-C-A **
15848962-T-TTA 13737082-T-TTA 13×TA**
15168481-C-A 13056567-C-A **
23059536-C-A 20897650-C-A **
15122431-C-A 13010518-C-A **
22634944-C-A 20473058-C-A **
10798245-C-CCATGT **
13839780-G-A 11719074-G-A **
11019348-C-A **
22611935-C-T 20450049-C-T **
10661660-A-T **
23475505-G-T 21313619-G-T **
7160552-G-T 7292511-G-T **
10785332-C-A **
10781317-T-A **
13545148-C-A 11389472-C-A **
10033543-C-A 10195934-C-A **
56873880-AT-A **
14735024-A-C 12623092-A-C **
9952378-C-A 10114769-C-A **
9424598-G-GAA 9586989-G-GAA 16×A**
10892972-A-T **
15623272-G-A 13511392-G-A **
10807072-C-CCCCTG **
15450362-C-A 13338482-C-A **
10763300-C-T **
18328815-C-A 16216935-C-A P6_Prx **
19261150-C-A 17149270-C-A **
20432868-AC-A 18270982-AC-A P5_Dst **
10950829-C-CTTTTATT **
13217476-G-A 11061800-G-A **
10671017-A-ATTTT **
10938414-C-T **
10950934-T-C **
10994267-T-A **
20104254-GGGGA-G 17992374-GGGGA-G P5_Dst **
18654750-C-A 16542870-C-A **
10938406-C-A **
56834592-G-T ***
22445718-A-G 20283832-A-G DYZ19 ***
22788533-G-A 20626647-G-A ***
19267344-A-C 17155464-A-C FGC201 ***
10875775-C-T ***
10778956-C-A ***
22868589-A-G 20706703-A-G ***
21168946-G-T 19007060-G-T ***
21265870-C-A 19103984-C-A ***
23041391-C-A 20879505-C-A ***
56836527-TCCTTCATTC-T,TCATTC ***
18606022-C-A 16494142-C-A ***
14642454-G-GTT 12530523-G-GTT 17×T***
10875780-C-T ***
13471935-G-T 11316259-G-T ***
21604953-C-A 19443067-C-A ***
22552346-C-A 20390460-C-A ***
23510909-C-A 21349023-C-A ***
23498080-ATTTTT-A,ATTT 21336194-ATTTTT-A,ATTT 19×T***
10995786-A-C,T ***
17649352-T-TA 15537472-T-TA 13×A***
19395188-G-A 17283308-G-A ***
21518040-C-A 19356154-C-A ***
23432963-C-T 21271077-C-T ***
13489168-T-C 11333492-T-C ***
21408219-C-A 19246333-C-A ***
13466356-G-C 11310680-G-C ***
13643042-A-C 11487366-A-C ***
10989446-A-C ***
21549183-GTT-G,GT 19387297-GTT-G,GT 17×T***
2852366-G-T 2984325-G-T ***
17295992-G-A 15184112-G-A ***
13838431-G-A 11717725-G-A BY91056 ***
14600563-C-A 12488763-C-A ***
8846520-C-A 8978479-C-A ***
9090974-C-A 9253365-C-A ***
8052756-C-A 8184715-C-A ***
9995081-C-A 10157472-C-A ***
23554902-C-A 21393016-C-A ***
10746999-G-A,C ***
8706769-C-A 8838728-C-A ***
10778957-A-T ***
10789325-C-A ***
10808630-CCACTG-C ***
22445719-A-C 20283833-A-C BY185970 DYZ19 ***
17186726-TAAAAA-T,TAAAA 15074846-TAAAAA-T,TAAAA 19×A***
18070191-CTTT-C 15958311-CTTT-C 15×T***
10872047-G-T ***
8103042-G-A 8235001-G-A ***
7940362-T-C 8072321-T-C ***
10987146-CCACTCGACTA-C,CCACTCCACTAGATT ***
10785290-T-A ***
2948637-TAC-T 3080596-TAC-T ***
5164477-C-A 5296436-C-A ***
15593000-C-A 13481120-C-A ***
19473873-C-A 17361993-C-A ***
10969866-C-A ***
17375326-G-T 15263446-G-T ***
8599992-GTTT-G 8731951-GTTT-G 16×T***
23555979-C-A 21394093-C-A ***
58981385-G-C 56835238-G-C ***
21616430-C-A 19454544-C-A ***
7163387-T-C 7295346-T-C ***
7213469-G-T 7345428-G-T ***
7215823-C-A 7347782-C-A ***
7512542-G-T 7644501-G-T ***
7567904-C-A 7699863-C-A ***
10890225-C-A ***
13471934-G-T 11316258-G-T ***
17294762-C-A 15182882-C-A ***
16086216-C-A 13974336-C-A ***
10764507-TCCA-T ***
10764506-T-TGCA ***
10796678-A-C,G ***
2752725-CAA-C,CAAA 2884684-CAA-C,CAAA 18×A***
15668700-T-C 13556820-T-C ***
15979814-C-A 13867934-C-A ***
16286634-T-C 14174754-T-C ***
2852370-A-G 2984329-A-G ***
10767668-C-A ***
23741963-G-T 21580077-G-T ***
16758653-C-A 14646773-C-A ***
10875770-C-T ***
19125694-CAAAAA-C 17013814-CAAAAA-C 24×A***
17010447-A-G 14898567-A-G ***
24399930-C-A 22253783-C-A ***
10764553-T-TA ***
56838995-T-A ***
13922389-C-A 11801683-C-A ***
14330722-C-A 12210016-C-A ***
19071673-C-A 16959793-C-A ***
24876955-G-T 22730808-G-T g1 ***
10785282-C-A ***
9509932-C-A 9672323-C-A ***
10787953-A-G,T ***
14251892-C-A 12131186-C-A ***
13215844-ATT-A,AT 11060168-ATT-A,AT 16×T***
10677335-C-T ***
19486899-C-A 17375019-C-A ***
14586315-C-T 12474515-C-T ***
14716712-G-T 12604780-G-T ***
14810820-C-T 12698891-C-T ***
19557636-C-A 17445756-C-A ***
10677376-C-T ***
10677337-A-T ***
13811216-A-T 11690510-A-T ***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.

Age Analysis Information (work in progress)

AllMcDonaldYFull
Kit: AM12840892915473020397233401
Used in age calculations892915473020397233401
Counts of SNPs2323
Variant counts last updated 2019-10-28 04:27:04.



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