Tree Position

R-P312/S116 > Z290 > L21/S145 > DF13 > Z39589 > L1335/S530 > L1065 > Z16325 > S744 > S764 > S756 > Z16328 > FGC32449 > FGC45278 > BY154 > FGC17059 > FGC45280

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19) POS-REF-ALT (hg38) Blocks Names Region McDonald BED combBED STRFGC2
67XNG
15875731-C-T 13763851-C-T FGC79366 YY+
9121390-A-G FGC79363 +
8976903-C-T 9139294-C-T FGC79364 Y+
8986329-T-C 9148720-T-C FGC79365 +
24880-A-C FGCLR159 *
26684244-G-T 24538097-G-T FGC79367 P1_g2 *
24546-T-C FGCLR35 *
10041987-G-A 10204378-G-A Z8949 **
35936-G-C FGC77603 **
17519842-A-G 15407962-A-G **
59010687-C-T 56864540-C-T **
15674117-T-C 13562237-T-C **
58999813-A-G 56853666-A-G **
9114320-N-T **
24879814-T-C 22733667-T-C g1 **
59010654-T-A 56864507-T-A **
32872-G-T **
13842853-G-A 11722147-G-A **
11013045-N-T **
56727829-T-C **
14991276-G-. 12879361-A-G A18824 **
10956869-N-T **
10674059-N-T **
27285878-G-A 25139731-G-A P1_g3 ***
27682054-G-T 25535907-G-T P1_Y2 ***
22474952-G-A 20313066-G-A DYZ19 ***
22475022-C-T 20313136-C-T DYZ19 ***
22590864-A-C 20428978-A-C ***
22623816-C-A 20461930-C-A ***
23048553-C-T 20886667-C-T ***
27682041-G-T 25535894-G-T P1_Y2 ***
24013426-G-A 21867279-G-A ***
23697862-C-A 21535976-C-A ***
25027699-G-C 22881552-G-C g1 ***
24207196-T-C 22061049-T-C P3_b1 ***
24650820-G-A 22504673-G-A P3_b2 ***
26948279-G-A 24802132-G-A P1_r3 ***
24673342-C-A 22527195-C-A P3_b2 ***
26544921-C-A 24398774-C-A P1_g2 ***
26495972-A-G 24349825-A-G P1_Y1 ***
22050157-G-C 19888271-G-C ***
24929053-A-T 22782906-A-T g1 ***
26455319-C-T 24309172-C-T P1_Y1 ***
25008379-A-G 22862232-A-G g1 ***
24896264-G-A 22750117-G-A g1 ***
15752638-CCTT-C 13640758-CCTT-C 25×CTT***
21794016-G-T 19632130-G-T ***
14250130-A-T 12129424-A-T ***
10985078-C-G ***
13350777-G-A 11195101-G-A ***
13452877-T-A 11297201-T-A ***
13452967-T-A 11297291-T-A ***
13452974-C-T 11297298-C-T BY85368 ***
13453630-T-C 11297954-T-C ***
13458764-T-A 11303088-T-A ***
13532037-G-A 11376361-G-A ***
13563615-G-A 11407939-G-A ***
13563618-G-T 11407942-G-T ***
13715670-G-C 11559994-G-C ***
11660375-N-T ***
13860064-G-C 11739358-G-C ***
14671366-A-C 12559432-A-C ***
21476064-G-T 19314178-G-T ***
15012524-T-C 12900612-T-C ***
15100858-G-A 12988946-G-A ***
15424468-T-C 13312588-T-C ***
15673968-A-G 13562088-A-G ***
15673978-T-C 13562098-T-C ***
15673983-G-A 13562103-G-A ***
15673989-A-C 13562109-A-C ***
15674046-T-C 13562166-T-C ***
16729210-G-T 14617330-G-T ***
17023515-G-A 14911635-G-A ***
28167412-A-C 26021265-A-C P1_b4 ***
20681597-A-T 18519711-A-T P4_Prx ***
20783768-A-G 18621882-A-G P4_Prx ***
21325792-T-C 19163906-T-C ***
17475035-C-T 15363155-C-T ***
28602147-C-A 26456000-C-A 13×A***
28170417-T-C 26024270-T-C P1_b4 ***
13450521-CTTCACTCCACTCCATCC-ATCCATCCCATTCCATCA 11294845-CTTCACTCCACTCCATCC-ATCCATCCCATTCCATCA ***
13452963-GCATT-CCATA 11297287-GCATT-CCATA ***
13452946-CTCAG-TTCCA 11297270-CTCAG-TTCCA ***
13452873-GCATT-CCATA 11297197-GCATT-CCATA 14×CATTC***
13452813-CTACAT-ATCCAC 11297137-CTACAT-ATCCAC ***
13452327-CCAC-ACAG 11296651-CCAC-ACAG ***
13451185-CTCCTTT-TTC 11295509-CTCCTTT-TTC ***
10961406-CAC-AAG ***
13455582-TC-AA 11299906-TC-AA ***
10961383-CTCCACTCC-TTCCTCTCT ***
10927537-CTCAAGTC-GTGCAGTG ***
10927529-CT-AG ***
10927521-GC-TG ***
10927507-CCTT-ACTG ***
10927497-CTTTAC-TTTAAT ***
13453394-CATTCCTTTCCTA-AATACCATTCTAT 11297718-CATTCCTTTCCTA-AATACCATTCTAT ***
13455774-AAG-CCCAGGGA 11300098-AAG-CCCAGGGA ***
10909100-NN-TC ***
20104256-GGAGAGA-G 17992376-GGAGAGA-G P5_Dst 22×GA***
56864507-TG-AC ***
56830309-ATG-TTA ***
56829401-A-AGACCG ***
21805280-NN-TC ***
23747205-CTTTTTTT-C 21585319-CTTTTTTT-C 29×T***
22479600-AA-GG 20317714-AA-GG DYZ19 ***
18263856-CAAAAAAAAA-C 16151976-CAAAAAAAAA-C 26×A***
13471930-TG-GA 11316254-TG-GA ***
12514212-AAAAAA-TTATAT ***
13859983-TAGAAA-GGAAT 11739277-TAGAAA-GGAAT ***
13811136-A-ATGGAC 11690430-A-ATGGAC ***
11654113-GGTGGGAG-AATTCA ***
13563615-GCCGAATC-ACCTAATT 11407939-GCCGAATC-ACCTAATT ***
13489356-TGCGTG-GGCATT 11333680-TGCGTG-GGCATT ***
10910829-CTGA-TG ***
10908476-GG-AC ***
28253595-G-T 26107448-G-T P1_b4 ***
56746088-A-C ***
13452408-TTG-ATT 11296732-TTG-ATT ***
13452248-CACT-GACA 11296572-CACT-GACA ***
56877799-G-T ***
56864628-A-G ***
56828278-C-T ***
56757934-G-A ***
56706181-G-A ***
28369379-C-CA 26223232-C-CA P1_gr2 18×A***
56692622-G-A ***
28785728-A-T 26639581-A-T ***
28785726-G-C 26639579-G-C ***
28785716-G-T 26639569-G-T ***
28751859-A-G 26605712-A-G ***
28344461-A-C 26198314-A-C P1_gr2 ***
13455679-CG-TA 11300003-CG-TA ***
28545016-CAAAAAAAAA-C 26398869-CAAAAAAAAA-C 22×A***
10896368-CCT-TCC ***
10652344-CAA-TAT ***
10756821-GCTC-ACTA ***
10756695-CTTCC-ATTCA ***
10694193-NNN-GGC ***
10691150-AA-TC ***
10669738-NN-TT ***
10668339-GC-CCACTCA ***
10652288-CA-TCG ***
13413-TAC-GGT ***
10646051-ACCATT-A ***
10632404-CCACACA-TC ***
9116370-NN-GT ***
8650022-G-GAGAGAAAGAA 8781981-G-GAGAGAAAGAA 19×AGAA***
15612-AA-TC ***
14750-GTGGGG-TTTCAT ***
10957767-N-A ***
10669739-N-T ***
10921522-A-T ***
13559736-T-C 11404060-T-C ***
59017340-G-T 56871193-G-T ***
59018406-T-A 56872259-T-A ***
59018426-A-T 56872279-A-T ***
18710355-G-A 16598475-G-A ***
58898226-C-T 56692645-G-A ***
24388082-A-ATC 22241935-A-ATC ***
22503626-G-A 20341740-G-A DYZ19 ***
22503684-T-C 20341798-T-C DYZ19 ***
58898313-C-T 56692558-G-A ***
13223285-A-G 11067609-A-G ***
58884177-G-A 56706694-C-T ***
13223282-A-G 11067606-A-G ***
59015137-A-G 56868990-A-G ***
13559726-C-T 11404050-C-T ***
13559741-A-C 11404065-A-C ***
59010319-G-T 56864172-G-T ***
13559742-C-T 11404066-C-T ***
13559743-A-C 11404067-A-C ***
58972998-CCATTCCATTCAATTCC-AG 56826851-CCATTCCATTCAATTCC-AG ***
58844805-C-T 56746066-G-A ***
9030408-AGAAAGGAAAG-A 9192799-AGAAAGGAAAG-A 17×GAAAG***
58971887-CATAT-C 56825740-CATAT-C 12×AT***
13450812-ATTCCG-GTTCCA 11295136-ATTCCG-GTTCCA ***
58844636-C-A 56746235-G-T ***
58976438-TCCACTCCACTCCATTCCATG-T 56830291-TCCACTCCACTCCATTCCATG-T ***
13694619-C-A 11538943-C-A ***
13867591-AT-CA 11746885-AT-CA ***
58898263-C-G 56692608-G-C ***
58898266-T-C 56692605-A-G ***
8160178-CAAAAAA-C 8292137-CAAAAAA-C 20×A***
59011890-G-T 56865743-G-T ***
59010184-T-C 56864037-T-C ***
21992963-TAAAAAA-T 19831077-TAAAAAA-T 23×A***
59024400-G-GCA 56878253-G-GCA 9×CA***
58834002-C-CCATTG 56756864-G-GAATGC ***
22229609-T-C 20067723-T-C DYZ19 ***
24895723-G-T 22749576-G-T g1 ***
28253566-T-A 26107419-T-A P1_b4 ***
22479566-A-G 20317680-A-G ZS11754 DYZ19 ***
19042179-CAAAAAA-C 16930299-CAAAAAA-C 17×A***
8184343-T-TGC 8316302-T-TGC ***
13460921-TACA-CACT 11305245-TACA-CACT ***
58898280-A-T 56692591-T-A ***
58898232-C-T 56692639-G-A ***
17307191-TATTGC-T 15195311-TATTGC-T 12×ATTGC***
13866779-AG-CA 11746073-AG-CA ***
59024399-TGCACACACACACACACACAT-CGCACACACACACACACACACAC 56878252-TGCACACACACACACACACAT-CGCACACACACACACACACACAC ***
13869769-G-A 11749063-G-A ***
13339572-C-T 11183896-C-T ***
59010161-A-T 56864014-A-T ***
13559757-A-G 11404081-A-G ***
13559785-T-C 11404109-T-C ***
13559812-G-A 11404136-G-A ***
22479601-A-G 20317715-A-G BY25220 DYZ19 ***
59000230-A-C 56854083-A-C ***
22479589-C-G 20317703-C-G Z25184 DYZ19 ***
22479600-A-G 20317714-A-G BY25219 DYZ19 ***
13460916-T-A 11305240-T-A ***
3428687-GATATAT-G 3560646-GATATAT-G 22×AT***
22229643-AGGAA-TGGAG 20067757-AGGAA-TGGAG DYZ19 ***
2984944-ATATATC-A 3116903-ATATATC-A ***
2984946-ATATC-A 3116905-ATATC-A ***
22237339-T-A 20075453-T-A BY22895 DYZ19 ***
23415294-ATATATG-A 21253408-ATATATG-A ***
10989152-C-CATTCAACTCCACACCATTCCACTCCATTCCTCTCA ***
11003072-G-C ***
10909100-N-T ***
10043181-T-A 10205572-T-A ***
3809299-G-A 3941258-G-A ***
4287708-C-T 4419667-C-T ***
4621405-C-A 4753364-C-A ***
4740319-G-A 4872278-G-A ***
5130546-G-T 5262505-G-T ***
6118193-G-A 6250152-G-A ***
6625378-G-A 6757337-G-A ***
6725506-G-C 6857465-G-C ***
6751010-A-T 6882969-A-T ***
9116370-N-G ***
9116371-N-T ***
9307021-G-C 9469412-G-C ***
9353655-A-G 9516046-A-G ***
9370339-C-T 9532730-C-T ***
10045287-T-C 10207678-T-C ***
36461-C-A ***
10056432-G-A 10218823-G-A ***
10632374-C-A ***
10632379-C-G ***
10632386-A-T ***
10632404-C-T ***
10658350-T-C ***
10658352-C-A ***
10668228-T-G ***
10669738-N-T ***
13452950-G-A 11297274-G-A ***
10694193-N-G ***
10694195-N-C ***
10871219-N-T ***
10908520-N-A ***
2984925-T-G 3116884-T-G ***
36458-G-C ***
11003078-G-A ***
35128-T-A FGC77797 ***
11003083-G-A ***
11003086-G-C ***
13460877-G-T 11305201-G-T ***
13453505-A-G 11297829-A-G ***
10657309-C-G ***
14575661-A-C 12463861-A-C ***
15424469-G-A 13312589-G-A ***
56828304-C-A ***
22520788-CAAAAAAAA-C 20358902-CAAAAAAAA-C 23×A***
10658360-T-C ***
11003084-A-T ***
13455605-A-T 11299929-A-T ***
20654981-A-AAT 18493095-A-AAT P4_Prx 21×AT***
5659707-GTATA-G 5791666-GTATA-G 28×TA***
56828279-A-G ***
30520-C-A FGCLR36 ***
56828292-T-G ***
27104-T-C ***
27093-T-G ***
27049-G-T FGC77613 ***
14875-T-G ***
14874-G-A ***
14873-A-T ***
27872695-C-T 25726548-C-T P1_Y2 ***
13457881-C-A 11302205-C-A ***
13452949-A-C 11297273-A-C ***
13457403-A-T 11301727-A-T ***
56678188-G-A ***
13339577-C-A 11183901-C-A ***
13339574-C-T 11183898-C-T ***
13559692-T-C 11404016-T-C ***
56877766-TAATT-GAATC ***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.

Age Analysis Information (work in progress)

AllMcDonaldYFull
Kit: 67XNG1587053095055498394057
Used in age calculations1587053095055498394057
Counts of SNPs12
Variant counts last updated 2019-08-08 22:10:28.



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