Williams
BigY2: 559793, YSEQ: 20882Tree Position
Unique Mutations
The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.
Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.
| Position | Blocks | Names | Region | McDonald BED | combBED | STR | BigY2 559793 | Manual Edits |
|---|---|---|---|---|---|---|---|---|
| hg19:Y:15820984-A-C hg38:Y:13709104-A-C | BY104343 | Y | Y | + | ||||
| hg19:Y:17183862-G-C hg38:Y:15071982-G-C | BY112867 | Y | Y | + | ||||
| hg19:Y:19432685-G-A hg38:Y:17320805-G-A | BY129015 | Y | Y | + | ||||
| hg19:Y:21651587-C-A hg38:Y:19489701-C-A | ** | |||||||
| hg19:Y:13457706-CACTAGTGTTG-C hg38:Y:11302030-CACTAGTGTTG-C | ** | |||||||
| hg19:Y:16371765-CAGT-C hg38:Y:14259885-CAGT-C | ** | |||||||
| hg19:Y:21864003-C-A hg38:Y:19702117-C-A | ** | |||||||
| hg19:Y:23391113-A-AT hg38:Y:21229227-A-AT | 9×T | ** | ||||||
| hg19:Y:13855131-C-A hg38:Y:11734425-C-A | DYZ17 | ** | ||||||
| hg19:Y:17929292-G-T hg38:Y:15817412-G-T | ** | |||||||
| hg19:Y:4604505-C-A hg38:Y:4736464-C-A | ** | |||||||
| hg19:Y:24446794-G-T hg38:Y:22300647-G-T | ** | |||||||
| hg19:Y:9934252-C-A hg38:Y:10096643-C-A | ** | |||||||
| hg19:Y:22938932-C-A hg38:Y:20777046-C-A | ** | |||||||
| hg38:Y:56847859-T-C | ** | |||||||
| hg19:Y:18253547-C-A hg38:Y:16141667-C-A | ** | |||||||
| hg19:Y:22202625-C-A hg38:Y:20040739-C-A | ** | |||||||
| hg38:Y:10877782-C-A | ** | |||||||
| hg38:Y:10763178-C-A | ** | |||||||
| hg19:Y:14232642-C-A hg38:Y:12111936-C-A | ** | |||||||
| hg19:Y:4064004-C-A hg38:Y:4195963-C-A | ** | |||||||
| hg38:Y:10824201-C-T | ** | |||||||
| hg19:Y:8141706-C-CT hg38:Y:8273665-C-CT | 10×T | ** | ||||||
| hg19:Y:7043490-C-A hg38:Y:7175449-C-A | ** | |||||||
| hg38:Y:10995841-C-A | ** | |||||||
| hg19:Y:13586031-C-A hg38:Y:11430355-C-A | ** | |||||||
| hg19:Y:13257942-G-GT hg38:Y:11102266-G-GT | 9×T | ** | ||||||
| hg19:Y:17802017-C-A hg38:Y:15690137-C-A | ** | |||||||
| hg19:Y:27570856-G-T hg38:Y:25424709-G-T | P1_Y2 | ** | ||||||
| hg38:Y:56847884-A-C | ** | |||||||
| hg38:Y:56847906-T-G | ** | |||||||
| hg19:Y:20459041-TC-T hg38:Y:18297155-TC-T | P5_Dst | ** | ||||||
| hg19:Y:6456110-C-A hg38:Y:6588069-C-A | ** | |||||||
| hg19:Y:16681376-C-A hg38:Y:14569496-C-A | ** | |||||||
| hg19:Y:14340942-C-A hg38:Y:12220237-C-A | BY11614 | ** | ||||||
| hg19:Y:3366646-C-A hg38:Y:3498605-C-A | ** | |||||||
| hg19:Y:13584268-C-A hg38:Y:11428592-C-A | ** | |||||||
| hg38:Y:56847861-T-C | ** | |||||||
| hg38:Y:56847865-C-A | ** | |||||||
| hg19:Y:16692113-AAACC-A hg38:Y:14580233-AAACC-A | ** | |||||||
| hg38:Y:56843261-C-A | ** | |||||||
| hg19:Y:22092677-C-A hg38:Y:19930791-C-A | ** | |||||||
| hg19:Y:8690704-C-A hg38:Y:8822663-C-A | ** | |||||||
| hg19:Y:9075233-C-A hg38:Y:9237624-C-A | ** | |||||||
| hg19:Y:9777807-C-A hg38:Y:9940198-C-A | BY186906 | ** | ||||||
| hg19:Y:8677986-C-A hg38:Y:8809945-C-A | ** | |||||||
| hg19:Y:24247529-C-A hg38:Y:22101382-C-A | P3_b1 | ** | ||||||
| hg19:Y:19451883-C-A hg38:Y:17340003-C-A | ** | |||||||
| hg38:Y:11026019-A-ATCC | ** | |||||||
| hg38:Y:11026021-T-TCG | ** | |||||||
| hg19:Y:15821333-C-A hg38:Y:13709453-C-A | ** | |||||||
| hg19:Y:14916784-G-A hg38:Y:12804851-G-A | ** | |||||||
| hg19:Y:6383212-C-A hg38:Y:6515171-C-A | ** | |||||||
| hg19:Y:23321570-G-T hg38:Y:21159684-G-T | ** | |||||||
| hg19:Y:16374706-C-A hg38:Y:14262826-C-A | ** | |||||||
| hg38:Y:10693289-A-G | ** | |||||||
| hg19:Y:14491376-C-A hg38:Y:12379573-C-A | ** | |||||||
| hg38:Y:10772018-T-C | ** | |||||||
| hg19:Y:17204241-C-A hg38:Y:15092361-C-A | ** | |||||||
| hg19:Y:17397186-C-A hg38:Y:15285306-C-A | ** | |||||||
| hg38:Y:10667030-A-T | ** | |||||||
| hg19:Y:19004546-C-A hg38:Y:16892666-C-A | ** | |||||||
| hg19:Y:13460563-G-T hg38:Y:11304887-G-T | ** | |||||||
| hg19:Y:6773723-C-A hg38:Y:6905682-C-A | ** | |||||||
| hg19:Y:10016908-C-A hg38:Y:10179299-C-A | ** | |||||||
| hg38:Y:56847841-T-A | ** | |||||||
| hg38:Y:56847844-C-A | ** | |||||||
| hg19:Y:17170202-G-T hg38:Y:15058322-G-T | ** | |||||||
| hg19:Y:18085999-G-T hg38:Y:15974119-G-T | ** | |||||||
| hg19:Y:16691394-C-A hg38:Y:14579514-C-A | ** | |||||||
| hg19:Y:15332114-A-C hg38:Y:13220232-A-C | ** | |||||||
| hg19:Y:22827306-C-A hg38:Y:20665420-C-A | ** | |||||||
| hg19:Y:13963542-C-A hg38:Y:11842836-C-A | ** | |||||||
| hg19:Y:18020784-C-A hg38:Y:15908904-C-A | ** | |||||||
| hg19:Y:16078540-C-A hg38:Y:13966660-C-A | ** | |||||||
| hg38:Y:10801685-T-G | ** | |||||||
| hg19:Y:18753540-G-T hg38:Y:16641660-G-T | ** | |||||||
| hg19:Y:3284218-C-A hg38:Y:3416177-C-A | ** | |||||||
| hg19:Y:16947439-C-A hg38:Y:14835559-C-A | ** | |||||||
| hg19:Y:16454710-C-A hg38:Y:14342830-C-A | ** | |||||||
| hg19:Y:3122720-C-A hg38:Y:3254679-C-A | ** | |||||||
| hg38:Y:10663324-C-A | ** | |||||||
| hg38:Y:10838985-C-A | ** | |||||||
| hg19:Y:16836776-C-A hg38:Y:14724896-C-A | Y13006 | Y14990 | ** | |||||
| hg19:Y:22919325-GTTTT-G hg38:Y:20757439-GTTTT-G | 20×T | ** | ||||||
| hg19:Y:7860047-C-A hg38:Y:7992006-C-A | ** | |||||||
| hg38:Y:11001743-C-A | ** | |||||||
| hg38:Y:11666430-C-A | DYZ17 | ** | ||||||
| hg19:Y:8558544-G-T hg38:Y:8690503-G-T | ** | |||||||
| hg19:Y:5494729-C-A hg38:Y:5626688-C-A | ** | |||||||
| hg19:Y:22963816-C-A hg38:Y:20801930-C-A | ** | |||||||
| hg19:Y:17375058-C-A hg38:Y:15263178-C-A | ** | |||||||
| hg38:Y:10688781-C-A | ** | |||||||
| hg19:Y:9962487-C-A hg38:Y:10124878-C-A | ** | |||||||
| hg19:Y:14143277-C-A hg38:Y:12022571-C-A | ** | |||||||
| hg19:Y:21566009-C-A hg38:Y:19404123-C-A | ** | |||||||
| hg38:Y:10757385-C-T | ** | |||||||
| hg38:Y:10685617-C-A | ** | |||||||
| hg38:Y:10801688-A-AG | ** | |||||||
| hg19:Y:7551607-T-C hg38:Y:7683566-T-C | ** | |||||||
| hg19:Y:2690659-C-A hg38:Y:2822618-C-A | ** | |||||||
| hg19:Y:2725128-C-CAA hg38:Y:2857087-C-CAA | 11×A | ** | ||||||
| hg19:Y:2805501-C-A hg38:Y:2937460-C-A | ** | |||||||
| hg19:Y:2836468-C-A hg38:Y:2968427-C-A | ** | |||||||
| hg19:Y:2840117-A-G hg38:Y:2972076-A-G | ** | |||||||
| hg19:Y:2908105-C-A hg38:Y:3040064-C-A | ** | |||||||
| hg19:Y:2960260-C-A hg38:Y:3092219-C-A | ** | |||||||
| hg19:Y:3012198-C-A hg38:Y:3144157-C-A | ** | |||||||
| hg19:Y:3148267-C-A hg38:Y:3280226-C-A | ** | |||||||
| hg19:Y:3195403-C-A hg38:Y:3327362-C-A | ** | |||||||
| hg19:Y:3873215-G-T hg38:Y:4005174-G-T | ** | |||||||
| hg19:Y:3949685-G-T hg38:Y:4081644-G-T | ** | |||||||
| hg19:Y:4018451-G-T hg38:Y:4150410-G-T | ** | |||||||
| hg19:Y:4072024-A-G hg38:Y:4203983-A-G | ** | |||||||
| hg19:Y:4088009-C-A hg38:Y:4219968-C-A | ** | |||||||
| hg19:Y:4439930-G-T hg38:Y:4571889-G-T | ** | |||||||
| hg19:Y:4841427-G-T hg38:Y:4973386-G-T | ** | |||||||
| hg19:Y:4955747-C-A hg38:Y:5087706-C-A | ** | |||||||
| hg19:Y:5112898-C-A hg38:Y:5244857-C-A | ** | |||||||
| hg19:Y:5235938-C-A hg38:Y:5367897-C-A | ** | |||||||
| hg19:Y:5471764-A-G hg38:Y:5603723-A-G | ** | |||||||
| hg19:Y:5471896-A-T hg38:Y:5603855-A-T | 17×AAAG | ** | ||||||
| hg19:Y:5472001-A-C hg38:Y:5603960-A-C | ** | |||||||
| hg19:Y:5599365-C-T hg38:Y:5731324-C-T | FGC44159 | ** | ||||||
| hg19:Y:5692339-A-G hg38:Y:5824298-A-G | ** | |||||||
| hg19:Y:5720807-T-C hg38:Y:5852766-T-C | ** | |||||||
| hg19:Y:5806030-G-T hg38:Y:5937989-G-T | ** | |||||||
| hg19:Y:5867245-G-A hg38:Y:5999204-G-A | ** | |||||||
| hg19:Y:5988420-G-T hg38:Y:6120379-G-T | ** | |||||||
| hg19:Y:6149655-G-T hg38:Y:6281614-G-T | IR3_Dst | ** | ||||||
| hg19:Y:6177515-G-T hg38:Y:6309474-G-T | IR3_Dst | ** | ||||||
| hg19:Y:6222317-T-G hg38:Y:6354276-T-G | IR3_Dst | ** | ||||||
| hg19:Y:6425674-C-A hg38:Y:6557633-C-A | ** | |||||||
| hg19:Y:6541249-CACTACTCATT-C hg38:Y:6673208-CACTACTCATT-C | ** | |||||||
| hg19:Y:6626969-C-A hg38:Y:6758928-C-A | ** | |||||||
| hg19:Y:6847792-C-A hg38:Y:6979751-C-A | ** | |||||||
| hg19:Y:6885247-A-C hg38:Y:7017206-A-C | ** | |||||||
| hg19:Y:6922460-C-A hg38:Y:7054419-C-A | ** | |||||||
| hg19:Y:6956590-G-C hg38:Y:7088549-G-C | ** | |||||||
| hg19:Y:6975267-A-G hg38:Y:7107226-A-G | ** | |||||||
| hg19:Y:6995039-T-A hg38:Y:7126998-T-A | ** | |||||||
| hg19:Y:7013537-C-A hg38:Y:7145496-C-A | ** | |||||||
| hg19:Y:7052942-C-A hg38:Y:7184901-C-A | ** | |||||||
| hg19:Y:7080192-T-C hg38:Y:7212151-T-C | ** | |||||||
| hg19:Y:7087789-A-G hg38:Y:7219748-A-G | ** | |||||||
| hg19:Y:7095737-C-A hg38:Y:7227696-C-A | ** | |||||||
| hg19:Y:7214610-C-A hg38:Y:7346569-C-A | ** | |||||||
| hg19:Y:7266394-C-A hg38:Y:7398353-C-A | ** | |||||||
| hg19:Y:7359349-C-A hg38:Y:7491308-C-A | ** | |||||||
| hg19:Y:7369593-G-T hg38:Y:7501552-G-T | ** | |||||||
| hg19:Y:7407423-C-A hg38:Y:7539382-C-A | ** | |||||||
| hg19:Y:7478845-T-A hg38:Y:7610804-T-A | IR1_L | ** | ||||||
| hg19:Y:7504943-C-A hg38:Y:7636902-C-A | IR1_L | ** | ||||||
| hg19:Y:7561865-C-A hg38:Y:7693824-C-A | ** | |||||||
| hg19:Y:7695866-C-A hg38:Y:7827825-C-A | ** | |||||||
| hg19:Y:7773679-C-A hg38:Y:7905638-C-A | ** | |||||||
| hg19:Y:7868255-G-T hg38:Y:8000214-G-T | ** | |||||||
| hg19:Y:8016070-C-A hg38:Y:8148029-C-A | ** | |||||||
| hg19:Y:8080051-C-A hg38:Y:8212010-C-A | ** | |||||||
| hg19:Y:8287219-C-A hg38:Y:8419178-C-A | ** | |||||||
| hg19:Y:8379073-CTT-C hg38:Y:8511032-CTT-C | ** | |||||||
| hg19:Y:8386121-G-T hg38:Y:8518080-G-T | ** | |||||||
| hg19:Y:8481860-G-A hg38:Y:8613819-G-A | ** | |||||||
| hg19:Y:8635901-G-T hg38:Y:8767860-G-T | ** | |||||||
| hg19:Y:8746479-C-A hg38:Y:8878438-C-A | ** | |||||||
| hg19:Y:8811163-C-A hg38:Y:8943122-C-A | ** | |||||||
| hg19:Y:9381017-T-C hg38:Y:9543408-T-C | ** | |||||||
| hg19:Y:9404295-G-T hg38:Y:9566686-G-T | ** | |||||||
| hg19:Y:9465399-C-A hg38:Y:9627790-C-A | ** | |||||||
| hg19:Y:9877228-G-A hg38:Y:10039619-G-A | FT20589 | ** | ||||||
| hg19:Y:9940184-C-A hg38:Y:10102575-C-A | ** | |||||||
| hg19:Y:9944531-G-T hg38:Y:10106922-G-T | ** | |||||||
| hg19:Y:9973177-C-A hg38:Y:10135568-C-A | ** | |||||||
| hg19:Y:10019609-C-A hg38:Y:10182000-C-A | ** | |||||||
| hg38:Y:10652627-C-A | ** | |||||||
| hg38:Y:10666995-G-GTTCTATTGGGTTTAA | ** | |||||||
| hg38:Y:10679161-G-T | ** | |||||||
| hg38:Y:10682729-C-A | ** | |||||||
| hg38:Y:10682749-TATTCCATTCCATTCC-T | ** | |||||||
| hg38:Y:10692259-CA-C | ** | |||||||
| hg38:Y:10693855-A-T | ** | |||||||
| hg38:Y:10745120-C-A | ** | |||||||
| hg38:Y:10745151-A-T | ** | |||||||
| hg38:Y:10751322-G-T | ** | |||||||
| hg38:Y:10757373-T-G | ** | |||||||
| hg38:Y:10757384-C-A | ** | |||||||
| hg38:Y:10772023-T-A | ** | |||||||
| hg38:Y:10801689-T-TGAAC | ** | |||||||
| hg38:Y:10807361-T-C | ** | |||||||
| hg38:Y:10824178-AT-A | ** | |||||||
| hg38:Y:10841162-C-A | ** | |||||||
| hg38:Y:10881683-C-A | ** | |||||||
| hg38:Y:10889279-A-T | ** | |||||||
| hg38:Y:10889294-A-AG | ** | |||||||
| hg38:Y:10889296-T-TGAAC | ** | |||||||
| hg38:Y:10920842-C-A | ** | |||||||
| hg38:Y:10922135-C-T | ** | |||||||
| hg38:Y:10938886-C-T | ** | |||||||
| hg38:Y:10946569-C-CAT | ** | |||||||
| hg38:Y:10946571-C-CCAA | ** | |||||||
| hg38:Y:10975874-C-A | ** | |||||||
| hg38:Y:10988667-T-G | ** | |||||||
| hg38:Y:10995800-A-C | ** | |||||||
| hg38:Y:11011714-C-A | ** | |||||||
| hg38:Y:11018859-C-A | ** | |||||||
| hg38:Y:11024430-C-A | FT439964 | ** | ||||||
| hg38:Y:11025872-C-A | ** | |||||||
| hg38:Y:11031625-C-A | ** | |||||||
| hg19:Y:13221972-AGG-A hg38:Y:11066296-AGG-A | ** | |||||||
| hg19:Y:13230511-G-T hg38:Y:11074835-G-T | ** | |||||||
| hg19:Y:13300863-C-A hg38:Y:11145187-C-A | ** | |||||||
| hg19:Y:13454326-C-A hg38:Y:11298650-C-A | ** | |||||||
| hg19:Y:13457683-T-C hg38:Y:11302007-T-C | ** | |||||||
| hg19:Y:13457704-T-C hg38:Y:11302028-T-C | ** | |||||||
| hg19:Y:13460593-G-A hg38:Y:11304917-G-A | ** | |||||||
| hg19:Y:13481865-G-A hg38:Y:11326189-G-A | ** | |||||||
| hg19:Y:13543578-C-A hg38:Y:11387902-C-A | ** | |||||||
| hg19:Y:13854838-GA-G hg38:Y:11734132-GA-G | DYZ17 | ** | ||||||
| hg19:Y:13922409-A-T hg38:Y:11801703-A-T | ** | |||||||
| hg19:Y:14000613-C-A hg38:Y:11879907-C-A | ** | |||||||
| hg19:Y:14028951-C-A hg38:Y:11908245-C-A | ** | |||||||
| hg19:Y:14073936-C-A hg38:Y:11953230-C-A | ** | |||||||
| hg19:Y:14078002-C-A hg38:Y:11957296-C-A | ** | |||||||
| hg19:Y:14144153-C-A hg38:Y:12023447-C-A | ** | |||||||
| hg19:Y:14226282-C-A hg38:Y:12105576-C-A | ** | |||||||
| hg19:Y:14286221-G-A hg38:Y:12165515-G-A | ** | |||||||
| hg19:Y:14330764-C-A hg38:Y:12210058-C-A | ** | |||||||
| hg19:Y:14348758-C-A hg38:Y:12228053-C-A | ** | |||||||
| hg19:Y:14388548-C-A hg38:Y:12267844-C-A | FT256694 | ** | ||||||
| hg19:Y:14430593-C-A hg38:Y:12309866-C-A | ** | |||||||
| hg19:Y:14714599-G-T hg38:Y:12602666-G-T | ** | |||||||
| hg19:Y:14720925-A-T hg38:Y:12608993-A-T | ** | |||||||
| hg19:Y:14771287-C-A hg38:Y:12659356-C-A | ** | |||||||
| hg19:Y:14831780-C-A hg38:Y:12719847-C-A | ** | |||||||
| hg19:Y:14916771-A-G hg38:Y:12804838-A-G | ** | |||||||
| hg19:Y:14923913-C-A hg38:Y:12811978-C-A | ** | |||||||
| hg19:Y:15041175-C-A hg38:Y:12929265-C-A | Y92872 | ** | ||||||
| hg19:Y:15174690-A-G hg38:Y:13062776-A-G | ** | |||||||
| hg19:Y:15185331-T-C hg38:Y:13073417-T-C | ** | |||||||
| hg19:Y:15191379-C-A hg38:Y:13079465-C-A | ** | |||||||
| hg19:Y:15238089-C-A hg38:Y:13126175-C-A | ** | |||||||
| hg19:Y:15352679-C-A hg38:Y:13240798-C-A | ** | |||||||
| hg19:Y:15357987-C-A hg38:Y:13246106-C-A | ** | |||||||
| hg19:Y:15393876-G-A hg38:Y:13281996-G-A | ** | |||||||
| hg19:Y:15580449-A-G hg38:Y:13468569-A-G | ** | |||||||
| hg19:Y:15580453-A-G hg38:Y:13468573-A-G | ** | |||||||
| hg19:Y:15690219-C-A hg38:Y:13578339-C-A | ** | |||||||
| hg19:Y:15766884-C-A hg38:Y:13655004-C-A | ** | |||||||
| hg19:Y:15772620-G-T hg38:Y:13660740-G-T | ** | |||||||
| hg19:Y:15939096-A-C hg38:Y:13827216-A-C | ** | |||||||
| hg19:Y:16044072-C-A hg38:Y:13932192-C-A | ** | |||||||
| hg19:Y:16170219-C-A hg38:Y:14058339-C-A | ** | |||||||
| hg19:Y:16250792-C-A hg38:Y:14138912-C-A | ** | |||||||
| hg19:Y:16275836-G-T hg38:Y:14163956-G-T | ** | |||||||
| hg19:Y:16309567-G-T hg38:Y:14197687-G-T | ** | |||||||
| hg19:Y:16311812-G-C hg38:Y:14199932-G-C | ** | |||||||
| hg19:Y:16311814-T-C hg38:Y:14199934-T-C | FT117455 | ** | ||||||
| hg19:Y:16387970-C-A hg38:Y:14276090-C-A | ** | |||||||
| hg19:Y:16612016-C-A hg38:Y:14500136-C-A | ** | |||||||
| hg19:Y:16620001-C-A hg38:Y:14508121-C-A | ** | |||||||
| hg19:Y:16628312-G-A hg38:Y:14516432-G-A | ** | |||||||
| hg19:Y:16749450-C-A hg38:Y:14637570-C-A | ** | |||||||
| hg19:Y:16835049-A-G hg38:Y:14723169-A-G | ** | |||||||
| hg19:Y:16863647-C-A hg38:Y:14751767-C-A | ** | |||||||
| hg19:Y:16988441-C-A hg38:Y:14876561-C-A | ** | |||||||
| hg19:Y:17036839-G-A hg38:Y:14924959-G-A | ** | |||||||
| hg19:Y:17128108-C-A hg38:Y:15016228-C-A | ** | |||||||
| hg19:Y:17187634-C-CAA hg38:Y:15075754-C-CAA | 15×A | ** | ||||||
| hg19:Y:17222278-G-T hg38:Y:15110398-G-T | ** | |||||||
| hg19:Y:17280121-C-A hg38:Y:15168241-C-A | ** | |||||||
| hg19:Y:17360077-C-A hg38:Y:15248197-C-A | ** | |||||||
| hg19:Y:17490881-C-A hg38:Y:15379001-C-A | Y71761 | ** | ||||||
| hg19:Y:17492373-C-A hg38:Y:15380493-C-A | ** | |||||||
| hg19:Y:17606263-C-A hg38:Y:15494383-C-A | ** | |||||||
| hg19:Y:17711489-C-A hg38:Y:15599609-C-A | ** | |||||||
| hg19:Y:17767967-G-GA hg38:Y:15656087-G-GA | 8×A | ** | ||||||
| hg19:Y:17808483-T-G hg38:Y:15696603-T-G | ** | |||||||
| hg19:Y:17887650-C-A hg38:Y:15775770-C-A | ** | |||||||
| hg19:Y:17916761-C-A hg38:Y:15804881-C-A | ** | |||||||
| hg19:Y:18137409-C-A hg38:Y:16025529-C-A | ** | |||||||
| hg19:Y:18183110-G-A hg38:Y:16071230-G-A | ** | |||||||
| hg19:Y:18188537-C-T hg38:Y:16076657-C-T | ** | |||||||
| hg19:Y:18262499-G-A hg38:Y:16150619-G-A | ** | |||||||
| hg19:Y:18401752-G-T hg38:Y:16289872-G-T | P6_Gap | ** | ||||||
| hg19:Y:18414333-C-A hg38:Y:16302453-C-A | P6_Gap | ** | ||||||
| hg19:Y:18422696-C-A hg38:Y:16310816-C-A | P6_Gap | ** | ||||||
| hg19:Y:18549227-C-A hg38:Y:16437347-C-A | ** | |||||||
| hg19:Y:18592040-C-A hg38:Y:16480160-C-A | ** | |||||||
| hg19:Y:18628006-T-C hg38:Y:16516126-T-C | ** | |||||||
| hg19:Y:18723906-TC-A hg38:Y:16612026-TC-A | ** | |||||||
| hg19:Y:18750148-C-T hg38:Y:16638268-C-T | ** | |||||||
| hg19:Y:18791305-T-C hg38:Y:16679425-T-C | ** | |||||||
| hg19:Y:18871854-C-A hg38:Y:16759974-C-A | ** | |||||||
| hg19:Y:18903670-C-A hg38:Y:16791790-C-A | ** | |||||||
| hg19:Y:18983886-C-A hg38:Y:16872006-C-A | ** | |||||||
| hg19:Y:19113753-T-A hg38:Y:17001873-T-A | ** | |||||||
| hg19:Y:19284833-C-A hg38:Y:17172953-C-A | ** | |||||||
| hg19:Y:19365287-G-A hg38:Y:17253407-G-A | ** | |||||||
| hg19:Y:19394219-C-A hg38:Y:17282339-C-A | ** | |||||||
| hg19:Y:19444899-C-A hg38:Y:17333019-C-A | ** | |||||||
| hg19:Y:19502878-T-C hg38:Y:17390998-T-C | ** | |||||||
| hg19:Y:19527197-C-A hg38:Y:17415317-C-A | ** | |||||||
| hg19:Y:20142828-G-T hg38:Y:18030948-G-T | P5_Dst | ** | ||||||
| hg19:Y:21043052-T-C hg38:Y:18881166-T-C | ** | |||||||
| hg19:Y:21046146-T-C hg38:Y:18884260-T-C | ** | |||||||
| hg19:Y:21195742-C-T hg38:Y:19033856-C-T | ** | |||||||
| hg19:Y:21223281-A-G hg38:Y:19061395-A-G | ** | |||||||
| hg19:Y:21331166-C-A hg38:Y:19169280-C-A | ** | |||||||
| hg19:Y:21414612-C-A hg38:Y:19252726-C-A | Y43321 | ** | ||||||
| hg19:Y:21428475-C-A hg38:Y:19266589-C-A | ** | |||||||
| hg19:Y:21436697-C-A hg38:Y:19274811-C-A | ** | |||||||
| hg19:Y:21457512-G-T hg38:Y:19295626-G-T | ** | |||||||
| hg19:Y:21487413-C-A hg38:Y:19325527-C-A | ** | |||||||
| hg19:Y:21617790-AAG-A hg38:Y:19455904-AAG-A | ** | |||||||
| hg19:Y:21658512-C-A hg38:Y:19496626-C-A | ** | |||||||
| hg19:Y:21920514-T-G hg38:Y:19758628-T-G | ** | |||||||
| hg19:Y:21927234-C-A hg38:Y:19765348-C-A | ** | |||||||
| hg19:Y:22034134-G-T hg38:Y:19872248-G-T | ** | |||||||
| hg19:Y:22115497-C-A hg38:Y:19953611-C-A | ** | |||||||
| hg19:Y:22117803-C-A hg38:Y:19955917-C-A | ** | |||||||
| hg19:Y:22127152-C-A hg38:Y:19965266-C-A | ** | |||||||
| hg19:Y:22236921-G-T hg38:Y:20075035-G-T | DYZ19 | ** | ||||||
| hg19:Y:22340086-C-A hg38:Y:20178200-C-A | DYZ19 | ** | ||||||
| hg19:Y:22540479-C-A hg38:Y:20378593-C-A | ** | |||||||
| hg19:Y:22649309-C-T hg38:Y:20487423-C-T | ** | |||||||
| hg19:Y:22659723-A-G hg38:Y:20497837-A-G | ** | |||||||
| hg19:Y:22810911-C-A hg38:Y:20649025-C-A | ** | |||||||
| hg19:Y:22893528-AT-A hg38:Y:20731642-AT-A | ** | |||||||
| hg19:Y:23013657-C-A hg38:Y:20851771-C-A | ** | |||||||
| hg19:Y:23027014-G-T hg38:Y:20865128-G-T | FT280000 | ** | ||||||
| hg19:Y:23060368-C-A hg38:Y:20898482-C-A | ** | |||||||
| hg19:Y:23074241-T-G hg38:Y:20912355-T-G | ** | |||||||
| hg19:Y:23141105-C-A hg38:Y:20979219-C-A | ** | |||||||
| hg19:Y:23317699-A-T hg38:Y:21155813-A-T | ** | |||||||
| hg19:Y:23321986-T-G hg38:Y:21160100-T-G | ** | |||||||
| hg19:Y:23381080-C-A hg38:Y:21219194-C-A | ** | |||||||
| hg19:Y:23436035-C-A hg38:Y:21274149-C-A | ** | |||||||
| hg19:Y:23436060-C-A hg38:Y:21274174-C-A | ** | |||||||
| hg19:Y:23457765-C-A hg38:Y:21295879-C-A | ** | |||||||
| hg19:Y:23475871-C-A hg38:Y:21313985-C-A | Y111645 | ** | ||||||
| hg19:Y:23580827-G-T hg38:Y:21418941-G-T | ** | |||||||
| hg19:Y:24456849-G-T hg38:Y:22310702-G-T | ** | |||||||
| hg19:Y:24469719-C-A hg38:Y:22323572-C-A | ** | |||||||
| hg19:Y:25971756-A-C hg38:Y:23825609-A-C | P1_Y1 | ** | ||||||
| hg19:Y:26025247-T-A hg38:Y:23879100-T-A | P1_Y1 | ** | ||||||
| hg19:Y:26078906-C-A hg38:Y:23932759-C-A | P1_Y1 | ** | ||||||
| hg19:Y:27546783-AC-A hg38:Y:25400636-AC-A | P1_Y2 | ** | ||||||
| hg19:Y:28544922-C-A hg38:Y:26398775-C-A | ** | |||||||
| hg19:Y:28766476-G-T hg38:Y:26620329-G-T | ** | |||||||
| hg19:Y:14407169-CTTT-C hg38:Y:12286467-CTTT-C | 16×T | *** | ||||||
| hg19:Y:23315713-CTTTTTT-C hg38:Y:21153827-CTTTTTT-C | 20×T | *** | ||||||
| hg19:Y:19011091-C-A hg38:Y:16899211-C-A | *** | |||||||
| hg19:Y:15712234-C-A hg38:Y:13600354-C-A | *** | |||||||
| hg19:Y:13463249-G-T hg38:Y:11307573-G-T | *** | |||||||
| hg19:Y:14022168-C-A hg38:Y:11901462-C-A | *** | |||||||
| hg38:Y:10976193-C-A | *** | |||||||
| hg19:Y:24449775-CT-C hg38:Y:22303628-CT-C | *** | |||||||
| hg19:Y:13483311-A-G hg38:Y:11327635-A-G | *** | |||||||
| hg19:Y:21528369-G-T hg38:Y:19366483-G-T | *** | |||||||
| hg19:Y:4172185-C-A hg38:Y:4304144-C-A | *** | |||||||
| hg19:Y:7142774-C-A hg38:Y:7274733-C-A | *** | |||||||
| hg19:Y:19222983-C-A hg38:Y:17111103-C-A | *** | |||||||
| hg19:Y:16445109-C-A hg38:Y:14333229-C-A | *** | |||||||
| hg19:Y:17332750-CAAAAAAA-C hg38:Y:15220870-CAAAAAAA-C | 22×A | *** | ||||||
| hg19:Y:18267208-C-A hg38:Y:16155328-C-A | *** | |||||||
| hg38:Y:56884277-G-T | *** | |||||||
| hg19:Y:9462219-G-T hg38:Y:9624610-G-T | *** | |||||||
| hg19:Y:16590953-CTT-C hg38:Y:14479073-CTT-C | 11×T | *** | ||||||
| hg19:Y:22106793-C-A hg38:Y:19944907-C-A | *** | |||||||
| hg19:Y:21549441-C-A hg38:Y:19387555-C-A | *** | |||||||
| hg19:Y:23368172-C-CA hg38:Y:21206286-C-CA | 8×A | *** | ||||||
| hg38:Y:21750890-G-T | *** | |||||||
| hg19:Y:23997560-C-A hg38:Y:21851413-C-A | *** | |||||||
| hg19:Y:22885877-C-A hg38:Y:20723991-C-A | *** | |||||||
| hg19:Y:16581436-TAAA-T,TAAAA hg38:Y:14469556-TAAA-T,TAAAA | 15×A | *** | ||||||
| hg19:Y:9697107-C-A hg38:Y:9859498-C-A | IR3_Prx | *** | ||||||
| hg19:Y:21564193-C-A hg38:Y:19402307-C-A | *** | |||||||
| hg19:Y:3161306-C-A hg38:Y:3293265-C-A | *** | |||||||
| hg19:Y:4049372-TAAA-T hg38:Y:4181331-TAAA-T | 16×A | *** | ||||||
| hg19:Y:6834185-C-A hg38:Y:6966144-C-A | *** | |||||||
| hg19:Y:6872496-C-A hg38:Y:7004455-C-A | *** | |||||||
| hg19:Y:6982865-C-A hg38:Y:7114824-C-A | FT259588 | *** | ||||||
| hg19:Y:7009385-C-A hg38:Y:7141344-C-A | *** | |||||||
| hg19:Y:7014319-C-A hg38:Y:7146278-C-A | *** | |||||||
| hg19:Y:7165018-C-A hg38:Y:7296977-C-A | *** | |||||||
| hg19:Y:7334249-C-A hg38:Y:7466208-C-A | *** | |||||||
| hg19:Y:7826004-C-A hg38:Y:7957963-C-A | *** | |||||||
| hg19:Y:7939919-T-C hg38:Y:8071878-T-C | *** | |||||||
| hg19:Y:7975676-C-A hg38:Y:8107635-C-A | *** | |||||||
| hg19:Y:7998781-G-T hg38:Y:8130740-G-T | *** | |||||||
| hg19:Y:8019499-C-A hg38:Y:8151458-C-A | *** | |||||||
| hg19:Y:8103109-C-A hg38:Y:8235068-C-A | *** | |||||||
| hg19:Y:8501222-C-A hg38:Y:8633181-C-A | *** | |||||||
| hg19:Y:8515192-C-A hg38:Y:8647151-C-A | *** | |||||||
| hg19:Y:8707666-C-A hg38:Y:8839625-C-A | *** | |||||||
| hg19:Y:8774124-G-C hg38:Y:8906083-G-C | *** | |||||||
| hg19:Y:9166930-C-A hg38:Y:9329321-C-A | *** | |||||||
| hg19:Y:9418643-T-C hg38:Y:9581034-T-C | *** | |||||||
| hg19:Y:9452237-G-T hg38:Y:9614628-G-T | *** | |||||||
| hg19:Y:9972276-C-A hg38:Y:10134667-C-A | *** | |||||||
| hg19:Y:10023045-G-A hg38:Y:10185436-G-A | *** | |||||||
| hg19:Y:10046044-C-A hg38:Y:10208435-C-A | *** | |||||||
| hg38:Y:10683272-CCACTC-C,CCACAG | *** | |||||||
| hg38:Y:10759889-G-T | *** | |||||||
| hg19:Y:13453772-C-A hg38:Y:11298096-C-A | *** | |||||||
| hg19:Y:13857883-A-G hg38:Y:11737177-A-G | DYZ17 | *** | ||||||
| hg19:Y:13989238-C-T hg38:Y:11868532-C-T | *** | |||||||
| hg19:Y:14324726-C-A hg38:Y:12204020-C-A | *** | |||||||
| hg19:Y:14454530-C-A hg38:Y:12333803-C-A | *** | |||||||
| hg19:Y:14547374-C-A hg38:Y:12435575-C-A | *** | |||||||
| hg19:Y:14551917-C-A hg38:Y:12440118-C-A | *** | |||||||
| hg19:Y:14557651-A-G hg38:Y:12445852-A-G | *** | |||||||
| hg19:Y:15428575-T-C hg38:Y:13316695-T-C | *** | |||||||
| hg19:Y:15439282-T-C hg38:Y:13327402-T-C | *** | |||||||
| hg19:Y:15755100-C-A hg38:Y:13643220-C-A | *** | |||||||
| hg19:Y:15823138-C-A hg38:Y:13711258-C-A | *** | |||||||
| hg19:Y:15956769-AT-A,ATT hg38:Y:13844889-AT-A,ATT | 12×T | *** | ||||||
| hg19:Y:15966446-C-A hg38:Y:13854566-C-A | *** | |||||||
| hg19:Y:16716849-C-A hg38:Y:14604969-C-A | *** | |||||||
| hg19:Y:16868632-T-C hg38:Y:14756752-T-C | *** | |||||||
| hg19:Y:16981796-C-A hg38:Y:14869916-C-A | *** | |||||||
| hg19:Y:17677713-C-A hg38:Y:15565833-C-A | *** | |||||||
| hg19:Y:17678170-A-G hg38:Y:15566290-A-G | *** | |||||||
| hg19:Y:17750093-C-A hg38:Y:15638213-C-A | *** | |||||||
| hg19:Y:17963096-ATT-A hg38:Y:15851216-ATT-A | 9×T | *** | ||||||
| hg19:Y:17997466-G-A hg38:Y:15885586-G-A | P7_Gap | *** | ||||||
| hg19:Y:18812312-C-A hg38:Y:16700432-C-A | *** | |||||||
| hg19:Y:18913092-ATTT-A hg38:Y:16801212-ATTT-A | 14×T | *** | ||||||
| hg19:Y:19181219-C-A hg38:Y:17069339-C-A | FTB6102 | *** | ||||||
| hg19:Y:19288129-C-A hg38:Y:17176249-C-A | *** | |||||||
| hg19:Y:19323650-C-T hg38:Y:17211770-C-T | *** | |||||||
| hg19:Y:19452055-C-A hg38:Y:17340175-C-A | *** | |||||||
| hg19:Y:19509607-A-G hg38:Y:17397727-A-G | *** | |||||||
| hg19:Y:20837062-C-A hg38:Y:18675176-C-A | P4_Gap | *** | ||||||
| hg19:Y:21046394-C-A hg38:Y:18884508-C-A | *** | |||||||
| hg19:Y:21134003-C-A hg38:Y:18972117-C-A | *** | |||||||
| hg19:Y:21366138-C-A hg38:Y:19204252-C-A | *** | |||||||
| hg19:Y:22601744-A-G hg38:Y:20439858-A-G | *** | |||||||
| hg19:Y:22797282-C-A hg38:Y:20635396-C-A | *** | |||||||
| hg19:Y:22860853-C-A hg38:Y:20698967-C-A | *** | |||||||
| hg19:Y:23069122-TTCAATGTTTG-T hg38:Y:20907236-TTCAATGTTTG-T | *** | |||||||
| hg19:Y:23260428-C-A hg38:Y:21098542-C-A | 11×A | *** | ||||||
| hg19:Y:23456028-C-A hg38:Y:21294142-C-A | *** | |||||||
| hg19:Y:23457901-C-A hg38:Y:21296015-C-A | *** | |||||||
| hg19:Y:23505456-C-A hg38:Y:21343570-C-A | *** | |||||||
| hg19:Y:23770218-C-A hg38:Y:21608332-C-A | *** | |||||||
| hg19:Y:23805499-C-A hg38:Y:21643613-C-A | *** | |||||||
| hg19:Y:23831173-C-A hg38:Y:21669287-C-A | *** | |||||||
| hg38:Y:56827687-T-C,GCATGACATCCGATTC | *** | |||||||
| hg38:Y:56835923-C-CCACT | *** |
In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.
For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.
The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.
The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.
Mutation Notes:
| Kit | POSITION-REF-ALT (hg19) | POSITION-REF-ALT (hg38) | Note |
|---|---|---|---|
| Manual | 2811481-C-T | 2943440-C-T | Tested positive per YSEQ. |
| Manual | 22771889-CT-C | 20610003-CT-C | Per Noah Meek, this kit has just two reads at this position, but both are positive. |
Age Analysis Information (work in progress)
| All | McDonald | YFull | |
| Kit: 559793 | 8381346 | 6890554 | 6856616 |
| Used in age calculations | 8381346 | 6890554 | 6856616 |
| Counts of SNPs | 3 | 3 |
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