Liutkevičius
BigY2: 263910MDKA Birth: Lithuania
Tree Position
Unique Mutations
The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.
Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.
POS-REF-ALT (hg19) | POS-REF-ALT (hg38) | Blocks | Names | Region | McDonald BED | combBED | STR | BigY2 263910 |
---|---|---|---|---|---|---|---|---|
18347312-C-T | 16235432-C-T | P6_Prx | A* | |||||
20705389-C-T | 18543503-C-T | P4_Prx | A* | |||||
9121083-T-C | 9283474-T-C | Y48218 | Y | + | ||||
9857835-A-G | 10020226-A-G | Y48574 | Y | Y | + | |||
13815123-G-A | 11694417-G-A | Y48691 | + | |||||
15251576-A-T | 13139662-A-T | Y50449 | Y | + | ||||
17291088-G-C | 15179208-G-C | Y53028 | Y | Y | + | |||
18067071-G-A | 15955191-G-A | Y54163 | Y | Y | + | |||
19279761-A-T | 17167881-A-T | Y55651 | Y | Y | + | |||
19407148-A-C | 17295268-A-C | Y55848 | Y | Y | + | |||
21612095-C-A | 19450209-C-A | Y56963 | Y | Y | + | |||
22142196-C-A | 19980310-C-A | Y57683 | Y | Y | + | |||
23041999-AAGTC-A | 20880113-AAGTC-A | + | ||||||
17386295-A-C | 15274415-A-C | Y53188 | Y | Y | * | |||
14026028-AAGAAAGAA-A,AAGAAAGAG | 11905322-AAGAAAGAA-A,AAGAAAGAG | * | ||||||
22432740-C-T | 20270854-C-T | DYZ19 | * | |||||
13800945-C-A | 11680239-C-A | ** | ||||||
58883701-G-T | 56707170-C-A | ** | ||||||
13462307-A-C | 11306631-A-C | ** | ||||||
16019072-G-T | 13907192-G-T | ** | ||||||
21147896-C-A | 18986010-C-A | ** | ||||||
13218719-G-A | 11063043-G-A | ** | ||||||
18354153-A-G | 16242273-A-G | P6_Prx | ** | |||||
25296840-T-TA | 23150693-T-TA | P2_r1 | 12×A | ** | ||||
9063731-C-A | 9226122-C-A | ** | ||||||
21435115-GAAA-G | 19273229-GAAA-G | 14×A | ** | |||||
14960241-GT-G | 12848316-GT-G | 9×T | ** | |||||
19899617-GGAA-G | 17787737-GGAA-G | P5_Prx | ** | |||||
11001389-T-C | ** | |||||||
10677743-C-CACTCT | ** | |||||||
15866247-T-G | 13754367-T-G | ** | ||||||
17876567-C-A | 15764687-C-A | ** | ||||||
10658474-A-G | ** | |||||||
10821892-C-G | ** | |||||||
10045459-C-A | 10207850-C-A | ** | ||||||
15364015-C-G | 13252135-C-G | ** | ||||||
14395658-C-A | 12274954-C-A | ** | ||||||
10965578-C-G | ** | |||||||
3367169-AT-A | 3499128-AT-A | 10×T | ** | |||||
26228719-G-A | 24082572-G-A | P1_Y1 | ** | |||||
10932526-G-A | ** | |||||||
10932531-C-A | ** | |||||||
10932532-C-T | ** | |||||||
10932541-C-A | ** | |||||||
10932563-A-T | ** | |||||||
28814913-A-G | 26668766-A-G | ** | ||||||
28814918-G-A | 26668771-G-A | ** | ||||||
28814919-G-A | 26668772-G-A | ** | ||||||
28814922-G-T | 26668775-G-T | ** | ||||||
28814937-C-T | 26668790-C-T | ** | ||||||
28814938-A-G | 26668791-A-G | ** | ||||||
7580049-C-A | 7712008-C-A | ** | ||||||
10744438-G-A | ** | |||||||
13271775-TAA-T | 11116099-TAA-T | 12×A | ** | |||||
28481210-C-A | 26335063-C-A | ** | ||||||
2746052-G-A | 2878011-G-A | ** | ||||||
28814934-G-C | 26668787-G-C | ** | ||||||
17385549-C-A | 15273669-C-A | ** | ||||||
10842687-A-C | ** | |||||||
25995072-A-T | 23848925-A-T | P1_Y1 | ** | |||||
23779829-C-A | 21617943-C-A | ** | ||||||
10932515-C-CATTG | ** | |||||||
10932527-T-C | ** | |||||||
10932534-C-CCACAACACTG | ** | |||||||
10932544-C-T | ** | |||||||
10932552-G-T | ** | |||||||
10821947-CTT-C | ** | |||||||
10761242-G-T | ** | |||||||
56834618-CATTCCATTCCAT-C | ** | |||||||
14198342-C-A | 12077636-C-A | ** | ||||||
56707163-C-A | ** | |||||||
10821934-T-C | ** | |||||||
10965570-AT-A | ** | |||||||
10887979-T-G | ** | |||||||
19775302-CT-C | 17663422-CT-C | P5_Prx | 32×T | ** | ||||
14396441-C-CA | 12275737-C-CA | 9×A | ** | |||||
7139049-A-G | 7271008-A-G | ** | ||||||
27477629-AT-A | 25331482-AT-A | P1_Y2 | ** | |||||
16241647-C-A | 14129767-C-A | ** | ||||||
13643479-C-A | 11487803-C-A | ** | ||||||
16865299-A-G | 14753419-A-G | ** | ||||||
14926461-TC-T | 12814526-TC-T | ** | ||||||
6827879-C-A | 6959838-C-A | ** | ||||||
7629797-C-A | 7761756-C-A | ** | ||||||
10821909-C-A | ** | |||||||
13474664-C-G | 11318988-C-G | ** | ||||||
13474707-A-T | 11319031-A-T | ** | ||||||
13474718-C-T | 11319042-C-T | ** | ||||||
15374441-GTTTTT-G | 13262561-GTTTTT-G | 20×T | ** | |||||
18742410-A-AT | 16630530-A-AT | ** | ||||||
22995459-C-A | 20833573-C-A | ** | ||||||
7303733-C-A | 7435692-C-A | ** | ||||||
14142472-C-A | 12021766-C-A | ** | ||||||
5785878-C-A | 5917837-C-A | ** | ||||||
9966049-T-G | 10128440-T-G | ** | ||||||
14711932-TC-T | 12599999-TC-T | 8×C | ** | |||||
17215937-CT-C | 15104057-CT-C | 8×T | ** | |||||
19319882-C-A | 17208002-C-A | ** | ||||||
10821896-C-A | ** | |||||||
10932565-C-A | ** | |||||||
10791784-G-T | ** | |||||||
18817875-A-G | 16705995-A-G | ** | ||||||
15342607-C-A | 13230726-C-A | ** | ||||||
10748209-G-T | ** | |||||||
19775356-A-C | 17663476-A-C | P5_Prx | ** | |||||
28665203-C-A | 26519056-C-A | ** | ||||||
10847052-T-G | ** | |||||||
10847055-C-G | ** | |||||||
5743134-C-A | 5875093-C-A | ** | ||||||
14344978-C-A | 12224273-C-A | ** | ||||||
25533255-C-G | 23387108-C-G | P1_gr1 | ** | |||||
7152623-C-A | 7284582-C-A | ** | ||||||
21325865-C-A | 19163979-C-A | ** | ||||||
13938019-C-A | 11817313-C-A | ** | ||||||
21488962-C-A | 19327076-C-A | ** | ||||||
10887991-C-A | ** | |||||||
25246422-CCCT-C | 23100275-CCCT-C | P2_r1 | 5×CCT | ** | ||||
6732592-C-A | 6864551-C-A | ** | ||||||
10888027-C-G | ** | |||||||
2791714-A-C | 2923673-A-C | ** | ||||||
9498693-C-A | 9661084-C-A | ** | ||||||
7134715-A-G | 7266674-A-G | ** | ||||||
13821369-C-A | 11700663-C-A | ** | ||||||
10821911-C-A | ** | |||||||
21939587-C-A | 19777701-C-A | ** | ||||||
17152858-C-A | 15040978-C-A | ** | ||||||
15219073-C-A | 13107159-C-A | ** | ||||||
10842004-C-A | ** | |||||||
4444816-G-T | 4576775-G-T | ** | ||||||
9509753-C-A | 9672144-C-A | ** | ||||||
8269578-A-T | 8401537-A-T | ** | ||||||
10991405-C-A | ** | |||||||
8482027-C-A | 8613986-C-A | ** | ||||||
10925478-C-A | ** | |||||||
28697894-C-A | 26551747-C-A | ** | ||||||
26073060-G-GTT | 23926913-G-GTT | P1_Y1 | ** | |||||
20215977-CAC-A | 18054091-CAC-A | P5_Dst | ** | |||||
15346968-C-A | 13235087-C-A | ** | ||||||
10973627-C-T | ** | |||||||
7330319-CT-C | 7462278-CT-C | ** | ||||||
18443452-C-T | 16331572-C-T | P6_Dst | ** | |||||
4174405-C-A | 4306364-C-A | ** | ||||||
7013504-C-A | 7145463-C-A | ** | ||||||
13871330-C-A | 11750624-C-A | ** | ||||||
19479193-C-A | 17367313-C-A | ** | ||||||
14866140-C-A | 12754206-C-A | 11×GT | ** | |||||
4469976-C-A | 4601935-C-A | ** | ||||||
24634143-G-T | 22487996-G-T | P3_t2 | ** | |||||
16679353-A-G | 14567473-A-G | ** | ||||||
27822251-G-T | 25676104-G-T | P1_Y2 | ** | |||||
17158995-G-TTT | 15047115-G-TTT | ** | ||||||
22123142-C-A | 19961256-C-A | ** | ||||||
2791780-C-A | 2923739-C-A | ** | ||||||
16813977-C-A | 14702097-C-A | ** | ||||||
17933971-C-A | 15822091-C-A | ** | ||||||
10821951-CTAT-C | ** | |||||||
5266926-C-A | 5398885-C-A | ** | ||||||
9689276-T-TC | 9851667-T-TC | IR3_Prx | ** | |||||
2845221-C-A | 2977180-C-A | 38×A | ** | |||||
15364016-C-T | 13252136-C-T | ** | ||||||
6829435-C-A | 6961394-C-A | ** | ||||||
14142396-C-A | 12021690-C-A | ** | ||||||
15364046-C-A | 13252166-C-A | ** | ||||||
18753139-G-T | 16641259-G-T | ** | ||||||
14421931-C-A | 12301206-C-A | ** | ||||||
11003732-C-T | ** | |||||||
11003733-C-CTTTCT | ** | |||||||
11003748-C-A | ** | |||||||
11003764-A-T | ** | |||||||
28653394-C-A | 26507247-C-A | ** | ||||||
26055712-C-A | 23909565-C-A | P1_Y1 | ** | |||||
16210923-A-T | 14099043-A-T | ** | ||||||
10029278-C-A | 10191669-C-A | ** | ||||||
7029697-C-A | 7161656-C-A | ** | ||||||
7098760-T-G | 7230719-T-G | ** | ||||||
16430497-TA-T | 14318617-TA-T | ** | ||||||
14176474-C-A | 12055768-C-A | ** | ||||||
16210895-C-A | 14099015-C-A | ** | ||||||
15363996-C-G | 13252116-C-G | ** | ||||||
14352776-C-A | 12232071-C-A | ** | ||||||
18972826-C-A | 16860946-C-A | ** | ||||||
2791740-A-G | 2923699-A-G | ** | ||||||
2791744-G-C | 2923703-G-C | ** | ||||||
2791772-T-C | 2923731-T-C | ** | ||||||
7649230-C-A | 7781189-C-A | ** | ||||||
7172426-G-T | 7304385-G-T | ** | ||||||
17693717-T-A | 15581837-T-A | Y53590 | ** | |||||
10925515-A-G | ** | |||||||
11657868-G-A | FT450602 | ** | ||||||
3286616-C-A | 3418575-C-A | ** | ||||||
15202169-C-A | 13090255-C-A | ** | ||||||
7040143-G-T | 7172102-G-T | ** | ||||||
4208285-C-A | 4340244-C-A | ** | ||||||
11659598-A-G | ** | |||||||
6918519-G-A | 7050478-G-A | ** | ||||||
15761048-C-A | 13649168-C-A | ** | ||||||
15860295-C-A | 13748415-C-A | ** | ||||||
5728047-C-A | 5860006-C-A | ** | ||||||
7080925-C-A | 7212884-C-A | ** | ||||||
56831061-C-A | ** | |||||||
4548201-C-A | 4680160-C-A | ** | ||||||
15157880-AAG-A | 13045966-AAG-A | ** | ||||||
4065348-C-A | 4197307-C-A | ** | ||||||
18858584-C-A | 16746704-C-A | ** | ||||||
28679001-C-A | 26532854-C-A | ** | ||||||
17006241-C-A | 14894361-C-A | ** | ||||||
11014563-G-T | ** | |||||||
3092011-C-A | 3223970-C-A | ** | ||||||
14714827-C-A | 12602894-C-A | ** | ||||||
5336727-G-T | 5468686-G-T | FT259110 | ** | |||||
16904662-T-A | 14792782-T-A | ** | ||||||
13273267-C-A | 11117591-C-A | ** | ||||||
15612263-G-C | 13500383-G-C | ** | ||||||
2750839-CAAAAAA-C | 2882798-CAAAAAA-C | 16×A | ** | |||||
2790524-C-T | 2922483-C-T | ** | ||||||
2790527-G-C | 2922486-G-C | ** | ||||||
2790529-T-C | 2922488-T-C | ** | ||||||
2790531-A-AT | 2922490-A-AT | ** | ||||||
2790535-A-C | 2922494-A-C | ** | ||||||
2790539-A-T | 2922498-A-T | ** | ||||||
2790539-AC-A | 2922498-AC-A | ** | ||||||
2790549-T-C | 2922508-T-C | ** | ||||||
2791743-A-T | 2923702-A-T | ** | ||||||
2791767-G-A | 2923726-G-A | ** | ||||||
2791791-G-A | 2923750-G-A | ** | ||||||
2791810-T-G | 2923769-T-G | ** | ||||||
2791816-G-GA | 2923775-G-GA | ** | ||||||
2791821-T-G | 2923780-T-G | ** | ||||||
2791836-G-C | 2923795-G-C | ** | ||||||
3079523-A-C | 3211482-A-C | ** | ||||||
3155717-A-C | 3287676-A-C | ** | ||||||
3166638-G-T | 3298597-G-T | ** | ||||||
3347678-A-G | 3479637-A-G | ** | ||||||
3367153-C-A | 3499112-C-A | FT82474 | ** | |||||
3374024-C-A | 3505983-C-A | ** | ||||||
3500604-TG-T | 3632563-TG-T | ** | ||||||
3817948-C-A | 3949907-C-A | ** | ||||||
3818142-A-G | 3950101-A-G | ** | ||||||
3987723-T-C | 4119682-T-C | ** | ||||||
4112844-C-A | 4244803-C-A | ** | ||||||
4271645-C-A | 4403604-C-A | ** | ||||||
4472378-C-A | 4604337-C-A | ** | ||||||
4533580-C-A | 4665539-C-A | ** | ||||||
4728393-C-CT | 4860352-C-CT | ** | ||||||
4951468-C-A | 5083427-C-A | ** | ||||||
5173340-C-A | 5305299-C-A | ** | ||||||
5454401-C-A | 5586360-C-A | ** | ||||||
5505867-C-A | 5637826-C-A | ** | ||||||
5626108-T-C | 5758067-T-C | ** | ||||||
5721138-G-T | 5853097-G-T | ** | ||||||
5817773-T-A | 5949732-T-A | ** | ||||||
6011446-A-G | 6143405-A-G | ** | ||||||
6167815-A-AG | 6299774-A-AG | IR3_Dst | ** | |||||
6401643-A-ATATC | 6533602-A-ATATC | ** | ||||||
6469764-A-G | 6601723-A-G | ** | ||||||
6663170-C-A | 6795129-C-A | ** | ||||||
6671411-A-G | 6803370-A-G | ** | ||||||
6720415-C-A | 6852374-C-A | ** | ||||||
6822469-G-A | 6954428-G-A | ** | ||||||
6957660-C-G | 7089619-C-G | ** | ||||||
6978331-C-G | 7110290-C-G | ** | ||||||
7107554-G-A | 7239513-G-A | ** | ||||||
7127918-G-A | 7259877-G-A | ** | ||||||
7139040-G-T | 7270999-G-T | ** | ||||||
7139040-G-GTC | 7270999-G-GTC | ** | ||||||
7139056-T-C | 7271015-T-C | ** | ||||||
7139060-A-G | 7271019-A-G | ** | ||||||
7167143-C-A | 7299102-C-A | ** | ||||||
7225581-C-A | 7357540-C-A | ** | ||||||
7337406-T-G | 7469365-T-G | ** | ||||||
7541155-C-A | 7673114-C-A | ** | ||||||
8072482-A-G | 8204441-A-G | ** | ||||||
8345690-T-A | 8477649-T-A | ** | ||||||
8816875-C-A | 8948834-C-A | Y64550 | ** | |||||
9438101-T-C | 9600492-T-C | ** | ||||||
9639102-G-GTACA | 9801493-G-GTACA | IR3_Prx | ** | |||||
9639109-T-TGCCTCC | 9801500-T-TGCCTCC | IR3_Prx | ** | |||||
9639116-G-GCA | 9801507-G-GCA | IR3_Prx | ** | |||||
9639122-G-C | 9801513-G-C | IR3_Prx | ** | |||||
9639124-G-A | 9801515-G-A | IR3_Prx | ** | |||||
9891057-A-G | 10053448-A-G | ** | ||||||
9974501-C-A | 10136892-C-A | ** | ||||||
10050863-T-A | 10213254-T-A | ** | ||||||
10080722-G-T | 10243113-G-T | ** | ||||||
10759398-A-T | ** | |||||||
10773629-C-A | ** | |||||||
10791780-G-A | ** | |||||||
10791790-A-C | ** | |||||||
10796545-C-T | FT431598 | ** | ||||||
10800422-C-A | ** | |||||||
10811239-C-A | ** | |||||||
10812338-C-A | ** | |||||||
10821922-C-CACTCT | ** | |||||||
10877405-T-C | ** | |||||||
10884882-TCTTCCATTCCACTCC-A | ** | |||||||
10888012-C-CATTTCTTTCT | ** | |||||||
10920932-G-T | ** | |||||||
10971630-T-C | ** | |||||||
10982941-C-CA | ** | |||||||
10987380-A-T | ** | |||||||
10999993-C-A | ** | |||||||
11015818-T-A | ** | |||||||
11037596-C-T | FT440416 | ** | ||||||
13199183-C-CAA | 11043507-C-CAA | ** | ||||||
13218721-G-A | 11063045-G-A | FT441097 | ** | |||||
13218726-T-C | 11063050-T-C | ** | ||||||
13310829-G-A | 11155153-G-A | ** | ||||||
13324244-T-C | 11168568-T-C | ** | ||||||
13324642-C-A | 11168966-C-A | ** | ||||||
13331409-C-A | 11175733-C-A | ** | ||||||
13372068-A-G | 11216392-A-G | ** | ||||||
13443142-C-A | 11287466-C-A | ** | ||||||
13473721-C-A | 11318045-C-A | ** | ||||||
13473730-C-A | 11318054-C-A | ** | ||||||
13474663-G-A | 11318987-G-A | ** | ||||||
13480919-AG-A | 11325243-AG-A | ** | ||||||
13520602-C-A | 11364926-C-A | ** | ||||||
13570682-C-A | 11415006-C-A | ** | ||||||
13578478-C-A | 11422802-C-A | ** | ||||||
11647899-T-C | ** | |||||||
11657857-G-A | ** | |||||||
11657859-T-A | ** | |||||||
11657877-A-G | ** | |||||||
11657967-C-A | ** | |||||||
11673710-T-A | ** | |||||||
13857682-A-T | 11736976-A-T | ** | ||||||
13859196-A-G | 11738490-A-G | ** | ||||||
13860521-G-A | 11739815-G-A | ** | ||||||
13896176-A-G | 11775470-A-G | ** | ||||||
13928295-T-C | 11807589-T-C | ** | ||||||
13932779-G-A | 11812073-G-A | FT67580 | ** | |||||
14022099-C-A | 11901393-C-A | ** | ||||||
14047377-C-T | 11926671-C-T | ** | ||||||
14152171-C-A | 12031465-C-A | ** | ||||||
14250605-G-A | 12129899-G-A | ** | ||||||
14284889-C-A | 12164183-C-A | ** | ||||||
14350022-A-G | 12229317-A-G | ** | ||||||
14380025-A-G | 12259321-A-G | ** | ||||||
14380238-A-G | 12259534-A-G | ** | ||||||
14385579-G-T | 12264875-G-T | ** | ||||||
14430383-G-A | 12309656-G-A | ** | ||||||
14430660-G-C | 12309933-G-C | ** | ||||||
14519559-C-A | 12407760-C-A | ** | ||||||
14529172-A-G | 12417373-A-G | ** | ||||||
14712081-G-A | 12600148-G-A | FTA18520 | ** | |||||
14776850-G-A | 12664919-G-A | ** | ||||||
14776909-C-A | 12664978-C-A | ** | ||||||
15011815-T-A | 12899903-T-A | ** | ||||||
15011820-T-C | 12899908-T-C | ** | ||||||
15189692-A-T | 13077778-A-T | ** | ||||||
15332224-A-G | 13220342-A-G | ** | ||||||
15363994-A-T | 13252114-A-T | ** | ||||||
15364014-C-T | 13252134-C-T | ** | ||||||
15364044-A-T | 13252164-A-T | ** | ||||||
15396645-A-T | 13284765-A-T | ** | ||||||
15498020-G-C | 13386140-G-C | ** | ||||||
15655422-C-A | 13543542-C-A | ** | ||||||
15743949-C-A | 13632069-C-A | ** | ||||||
15761832-A-G | 13649952-A-G | ** | ||||||
15927729-A-G | 13815849-A-G | ** | ||||||
15946669-C-A | 13834789-C-A | ** | ||||||
16033508-T-G | 13921628-T-G | ** | ||||||
16044563-C-A | 13932683-C-A | ** | ||||||
16059748-C-A | 13947868-C-A | ** | ||||||
16071752-C-A | 13959872-C-A | ** | ||||||
16215507-T-A | 14103627-T-A | ** | ||||||
16428601-C-A | 14316721-C-A | ** | ||||||
16429101-G-T | 14317221-G-T | ** | ||||||
16522699-C-A | 14410819-C-A | ** | ||||||
16590693-C-T | 14478813-C-T | ** | ||||||
16590715-A-G | 14478835-A-G | ** | ||||||
16607894-G-A | 14496014-G-A | ** | ||||||
16614714-C-A | 14502834-C-A | ** | ||||||
16679352-C-T | 14567472-C-T | ** | ||||||
16707480-G-T | 14595600-G-T | ** | ||||||
16828938-C-A | 14717058-C-A | ** | ||||||
16865293-A-C | 14753413-A-C | ** | ||||||
16865308-C-T | 14753428-C-T | ** | ||||||
17285058-C-A | 15173178-C-A | ** | ||||||
17285088-C-A | 15173208-C-A | ** | ||||||
17367750-A-T | 15255870-A-T | ** | ||||||
17434088-C-A | 15322208-C-A | ** | ||||||
17518749-C-A | 15406869-C-A | ** | ||||||
17534655-C-A | 15422775-C-A | ** | ||||||
17544824-T-A | 15432944-T-A | ** | ||||||
17544895-A-T | 15433015-A-T | ** | ||||||
17545548-G-T | 15433668-G-T | ** | ||||||
17547671-C-A | 15435791-C-A | ** | ||||||
17560661-A-G | 15448781-A-G | ** | ||||||
17713908-C-A | 15602028-C-A | ** | ||||||
17716957-G-A | 15605077-G-A | FTA24227 | ** | |||||
17728562-C-A | 15616682-C-A | ** | ||||||
17860697-C-A | 15748817-C-A | ** | ||||||
18087006-C-A | 15975126-C-A | ** | ||||||
18173087-C-A | 16061207-C-A | ** | ||||||
18211028-G-A | 16099148-G-A | ** | ||||||
18242781-C-A | 16130901-C-A | ** | ||||||
18266259-T-G | 16154379-T-G | ** | ||||||
18266265-C-A | 16154385-C-A | ** | ||||||
18529094-A-G | 16417214-A-G | P6_Dst | ** | |||||
18554366-C-A | 16442486-C-A | ** | ||||||
18754841-T-C | 16642961-T-C | Y54849 | ** | |||||
18838864-G-A | 16726984-G-A | ** | ||||||
18890461-CAACA-C | 16778581-CAACA-C | ** | ||||||
18915064-T-A | 16803184-T-A | ** | ||||||
19012376-C-A | 16900496-C-A | ** | ||||||
19060054-T-A | 16948174-T-A | ** | ||||||
19112421-C-A | 17000541-C-A | ** | ||||||
19126407-C-A | 17014527-C-A | ** | ||||||
19146524-C-A | 17034644-C-A | ** | ||||||
19399823-A-G | 17287943-A-G | ** | ||||||
20104197-A-T | 17992317-A-T | P5_Dst | ** | |||||
20252807-A-AT | 18090921-A-AT | P5_Dst | ** | |||||
20557532-C-A | 18395646-C-A | P5_Dst | ** | |||||
20655060-G-GTA | 18493174-G-GTA | P4_Prx | ** | |||||
21267986-C-A | 19106100-C-A | ** | ||||||
21324185-G-A | 19162299-G-A | ** | ||||||
21459907-T-C | 19298021-T-C | ** | ||||||
21498800-A-G | 19336914-A-G | ** | ||||||
21522172-C-A | 19360286-C-A | ** | ||||||
21553731-G-T | 19391845-G-T | ** | ||||||
21691924-C-A | 19530038-C-A | ** | ||||||
21708238-A-T | 19546352-A-T | ** | ||||||
22055526-C-A | 19893640-C-A | ** | ||||||
22154225-G-T | 19992339-G-T | ** | ||||||
22629681-C-T | 20467795-C-T | ** | ||||||
22951329-C-A | 20789443-C-A | ** | ||||||
22954630-A-G | 20792744-A-G | ** | ||||||
22956169-A-G | 20794283-A-G | ** | ||||||
22989587-A-G | 20827701-A-G | ** | ||||||
23128742-C-A | 20966856-C-A | ** | ||||||
23193159-T-A | 21031273-T-A | ** | ||||||
23193174-A-G | 21031288-A-G | ** | ||||||
23193175-A-T | 21031289-A-T | ** | ||||||
23210066-C-A | 21048180-C-A | ** | ||||||
23223298-C-G | 21061412-C-G | ** | ||||||
23360714-A-T | 21198828-A-T | ** | ||||||
23440719-T-C | 21278833-T-C | ** | ||||||
23465872-G-T | 21303986-G-T | ** | ||||||
23848564-T-G | 21686678-T-G | ** | ||||||
23848566-T-C | 21686680-T-C | ** | ||||||
23848567-G-A | 21686681-G-A | ** | ||||||
23848571-G-T | 21686685-G-T | ** | ||||||
23848575-C-T | 21686689-C-T | ** | ||||||
23848581-G-A | 21686695-G-A | ** | ||||||
23848583-A-G | 21686697-A-G | ** | ||||||
23848584-A-T | 21686698-A-T | ** | ||||||
23848589-A-G | 21686703-A-G | ** | ||||||
23848596-A-G | 21686710-A-G | ** | ||||||
23848597-C-G | 21686711-C-G | ** | ||||||
23848610-T-C | 21686724-T-C | ** | ||||||
24013756-G-T | 21867609-G-T | ** | ||||||
24071705-T-C | 21925558-T-C | FTA55195 | P3_b1 | ** | ||||
24466418-A-G | 22320271-A-G | ** | ||||||
25884752-A-AG | 23738605-A-AG | P1_Y1 | ** | |||||
26075389-T-A | 23929242-T-A | P1_Y1 | 9×TG | ** | ||||
26075390-T-TGA | 23929243-T-TGA | P1_Y1 | ** | |||||
26286235-G-T | 24140088-G-T | P1_Y1 | ** | |||||
27477615-C-T | 25331468-C-T | P1_Y2 | ** | |||||
27862600-G-T | 25716453-G-T | P1_Y2 | ** | |||||
28462080-A-G | 26315933-A-G | ** | ||||||
28465971-T-A | 26319824-T-A | ** | ||||||
28516504-C-A | 26370357-C-A | ** | ||||||
28575248-C-A | 26429101-C-A | ** | ||||||
28604948-G-T | 26458801-G-T | ** | ||||||
28653364-C-A | 26507217-C-A | ** | ||||||
28697900-A-G | 26551753-A-G | ** | ||||||
28755088-C-A | 26608941-C-A | ** | ||||||
28768729-A-T | 26622582-A-T | ** | ||||||
28782907-C-A | 26636760-C-A | ** | ||||||
56826551-T-A | ** | |||||||
56849438-G-A | ** | |||||||
30366-A-T | ** | |||||||
27810184-CAAAG-C,CAAAGAAAG | 25664037-CAAAG-C,CAAAGAAAG | P1_Y2 | 21×AAAG | *** | ||||
13483004-C-G | 11327328-C-G | *** | ||||||
9516751-C-T | 9679142-C-T | 14×T | *** | |||||
14609556-C-T | 12497758-C-T | *** | ||||||
2901505-C-A | 3033464-C-A | *** | ||||||
15394995-T-C | 13283115-T-C | *** | ||||||
19529488-GA-G | 17417608-GA-G | 10×A | *** | |||||
10764547-TTTCAC-T,TTTAC | *** | |||||||
14884680-C-A | 12772746-C-A | *** | ||||||
10807335-TTCA-T | *** | |||||||
13489309-G-C | 11333633-G-C | BY26218 | *** | |||||
13489317-G-C | 11333641-G-C | BY26220 | *** | |||||
6874882-CA-C | 7006841-CA-C | 9×A | *** | |||||
18742368-G-A | 16630488-G-A | *** | ||||||
10999875-A-C | *** | |||||||
18742377-C-T | 16630497-C-T | *** | ||||||
18742383-T-C | 16630503-T-C | *** | ||||||
18742384-G-A | 16630504-G-A | *** | ||||||
18742397-T-C | 16630517-T-C | *** | ||||||
17100313-C-A | 14988433-C-A | *** | ||||||
15969984-AG-A | 13858104-AG-A | *** | ||||||
22855318-G-T | 20693432-G-T | *** | ||||||
10847077-C-A | *** | |||||||
22446649-G-C | 20284763-G-C | DYZ19 | *** | |||||
13461961-C-T | 11306285-C-T | *** | ||||||
10825471-TTTCCA-T | *** | |||||||
13314632-C-A | 11158956-C-A | *** | ||||||
19463634-C-A | 17351754-C-A | *** | ||||||
16427381-C-A | 14315501-C-A | *** | ||||||
26314810-G-T | 24168663-G-T | P1_Y1 | *** | |||||
56833320-C-T | *** | |||||||
22587954-CAAA-C | 20426068-CAAA-C | 13×A | *** | |||||
19135068-G-T | 17023188-G-T | *** | ||||||
14993842-AT-A,ATT | 12881927-AT-A,ATT | 13×T | *** | |||||
7504731-T-C | 7636690-T-C | IR1_L | *** | |||||
8333636-C-A | 8465595-C-A | *** | ||||||
9730464-ATGTGTGTG-A | 9892855-ATGTGTGTG-A | IR3_Prx | 11×TG | *** | ||||
10685752-C-A | *** | |||||||
10754011-A-T | *** | |||||||
10768615-T-C | *** | |||||||
10875853-C-A | *** | |||||||
10967458-G-T | *** | |||||||
13585267-C-A | 11429591-C-A | *** | ||||||
11668648-G-A | FT451061 | *** | ||||||
13839878-A-C | 11719172-A-C | *** | ||||||
16345135-CTCTTCTTCTTCTTCT-C,CTCTTCTTCT | 14233255-CTCTTCTTCTTCTTCT-C,CTCTTCTTCT | 18×TCT | *** | |||||
19248018-C-A | 17136138-C-A | *** | ||||||
21472175-TAAA-T | 19310289-TAAA-T | 14×A | *** | |||||
22256848-GG-G,GT | 20094962-GG-G,GT | DYZ19 | *** | |||||
22256850-TA-T | 20094964-TA-T | DYZ19 | *** | |||||
28485001-C-A | 26338854-C-A | *** |
In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.
For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.
The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.
The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.