Leaird

BigY2: 353007
MDKA Birth: United States > North Carolina

Tree Position

R-P312/S116 > Z290 > L21/S145 > DF13 > Z39589 > L1335/S530 > L1065 > Z16325 > S744 > S691 > BY3127 > A850 > BY11749 > Y22159 > Y22337 > Y22339 > BY158688 > Z42870

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19) POS-REF-ALT (hg38) Blocks Names Region McDonald BED combBED STRBigY2
353007
19831130-C-T 17719250-C-T P5_Prx A*
18274891-G-GGT 16163011-G-GGT P6_Prx 8×GTA*
13808929-G-A 11688223-G-A BY90185 FT5460 +
16670268-G-A 14558388-G-A BY109349 YY+
13478488-C-A 11322812-C-A *
28813812-A-AGGAAT 26667665-A-AGGAAT 5×GGAAT*
14079631-C-A 11958925-C-A **
14106900-G-A 11986194-G-A **
14122960-G-T 12002254-G-T **
14176326-C-A 12055620-C-A **
14033081-C-A 11912375-C-A **
14200567-C-G 12079861-C-G **
14200570-C-G 12079864-C-G **
14229764-A-T 12109058-A-T **
14241074-C-A 12120368-C-A **
14285831-C-A 12165125-C-A **
14038070-C-A 11917364-C-A **
13828350-C-A 11707644-C-A **
13907742-C-A 11787036-C-A **
13842631-C-A 11721925-C-A **
14357612-C-A 12236907-C-A **
11652805-G-T **
11650332-G-T **
11645303-C-A **
13482886-C-A 11327210-C-A **
13313064-C-T 11157388-C-T **
13196616-C-A 11040940-C-A **
11018267-C-T **
10990031-C-T **
10982345-C-CTATTA **
10967508-C-A **
14343138-C-A 12222433-C-A **
56870883-G-T **
14376047-C-A 12255343-C-A **
15057232-C-A 12945324-C-A **
15744656-A-C 13632776-A-C **
15733774-C-G 13621894-C-G **
15546196-C-A 13434316-C-A **
15490388-C-A 13378508-C-A **
15449878-TA-T 13337998-TA-T **
15423432-G-T 13311552-G-T **
15399252-A-G 13287372-A-G **
15345663-C-A 13233782-C-A **
15190257-C-A 13078343-C-A **
15176479-C-A 13064565-C-A **
15151318-A-G 13039405-A-G **
15126740-C-A 13014827-C-A **
15059660-C-G 12947752-C-G **
15047990-C-A 12936081-C-A **
10967495-T-G **
15047924-ATT-A 12936015-ATT-A **
14938661-G-T 12826735-G-T **
14913019-C-A 12801086-C-A **
14867173-C-A 12755243-C-A **
14776097-C-A 12664166-C-A **
14765803-C-A 12653872-C-A **
14639663-G-T 12527732-G-T **
14532701-G-T 12420902-G-T **
14526589-C-A 12414790-C-A **
14516440-C-A 12404641-C-A **
14491100-C-A 12370369-C-A **
14460292-C-A 12339565-C-A **
14395230-C-A 12274526-C-A **
14385518-G-T 12264814-G-T **
10950977-A-T **
10958259-C-A **
7939525-C-A 8071484-C-A **
9652159-TATATATATATA-T 9814550-TATATATATATA-T IR3_Prx **
9414799-C-A 9577190-C-A **
9018273-C-A 9180664-C-A **
8974427-C-A 9136818-C-A **
8773730-TA-T 8905689-TA-T **
8726301-A-C 8858260-A-C **
8726295-A-C 8858254-A-C **
8673424-C-A 8805383-C-A **
8666735-T-C 8798694-T-C **
8151332-C-A 8283291-C-A **
7982888-G-A 8114847-G-A **
7963004-C-A 8094963-C-A **
7947960-G-T 8079919-G-T **
7939520-C-A 8071479-C-A **
9931664-C-A 10094055-C-A **
7776592-T-C 7908551-T-C **
7706338-C-A 7838297-C-A **
7656790-C-A 7788749-C-A **
7363842-T-C 7495801-T-C **
7361332-C-A 7493291-C-A **
7303109-C-G 7435068-C-G **
7294039-C-A 7425998-C-A **
7277746-C-A 7409705-C-A **
7270490-C-A 7402449-C-A **
7218405-G-T 7350364-G-T **
7185451-C-A 7317410-C-A **
7185438-C-A 7317397-C-A **
7138988-C-A 7270947-C-A **
9702968-A-AAC 9865359-A-AAC IR3_Prx **
9932633-C-A 10095024-C-A **
15862360-C-A 13750480-C-A **
10835711-C-A **
10950963-C-T **
10947475-TC-T **
10925817-A-G **
10925781-T-G **
10920059-G-A **
10917003-G-T **
10892251-C-A **
10882658-C-A **
10863524-T-G **
10862818-T-C **
10862113-T-C **
10846748-T-C **
10846620-C-A **
10820545-G-T **
10020197-G-A 10182588-G-A **
10819536-C-T **
10815927-C-A **
10798075-C-A **
10770926-C-A **
10770919-C-CTCCTT **
10770919-C-T **
10770913-A-T **
10768100-C-T **
10764756-T-A **
10749426-C-A **
10693298-A-T **
10626509-C-G **
10626493-A-T **
10625698-C-A **
15831357-C-A 13719477-C-A **
16018416-C-A 13906536-C-A **
15974521-C-A 13862641-C-A **
21550275-T-C 19388389-T-C **
22523498-C-A 20361612-C-A **
22340018-T-C 20178132-T-C DYZ19 **
22147301-C-A 19985415-C-A **
22010378-T-G 19848492-T-G **
22010375-T-G 19848489-T-G **
22010374-T-C 19848488-T-C **
22010369-A-G 19848483-A-G **
22010363-G-A 19848477-G-A **
22010354-A-G 19848468-A-G **
21989705-T-G 19827819-T-G **
21824620-A-C 19662734-A-C **
21565163-C-A 19403277-C-A **
21509791-T-C 19347905-T-C **
22714158-C-A 20552272-C-A **
21438039-C-A 19276153-C-A **
21345015-A-C 19183129-A-C **
21345001-C-A 19183115-C-A **
21327484-A-G 19165598-A-G **
21292944-C-A 19131058-C-A **
21218636-C-G 19056750-C-G **
21206840-CCTCATTCCCATTACCTGCTCCACCCTGA-C 19044954-CCTCATTCCCATTACCTGCTCCACCCTGA-C **
21174468-C-A 19012582-C-A **
21115429-A-G 18953543-A-G **
21086994-C-A 18925108-C-A **
20974863-ACAACAACAG-A 18812977-ACAACAACAG-A P4_Dst **
20968366-G-T 18806480-G-T P4_Dst **
20697971-G-T 18536085-G-T P4_Prx **
22629940-A-G 20468054-A-G **
22768861-C-A 20606975-C-A **
20500942-G-GAC 18339056-G-GAC P5_Dst 15×A**
24517639-T-C 22371492-T-C **
56841112-C-A **
56742657-G-T **
28774418-C-A 26628271-C-A **
28764399-A-C 26618252-A-C **
28760840-G-T 26614693-G-T **
28754936-C-A 26608789-C-A **
28719477-C-A 26573330-C-A **
28657939-T-G 26511792-T-G **
28555337-G-T 26409190-G-T **
28492436-A-C 26346289-A-C **
27842353-G-T 25696206-G-T P1_Y2 **
24633997-G-T 22487850-G-T P3_t2 **
24613955-T-TGG 22467808-T-TGG P3_t2 **
24280906-G-T 22134759-G-T P3_t1 **
22843837-A-C 20681951-A-C **
24220715-A-C 22074568-A-C P3_b1 **
24220564-C-A 22074417-C-A P3_b1 **
23779212-G-A 21617326-G-A **
23648156-C-A 21486270-C-A **
23598165-A-G 21436279-A-G **
23491030-T-G 21329144-T-G **
23391618-C-A 21229732-C-A **
23284161-C-A 21122275-C-A **
23029746-G-T 20867860-G-T **
22963267-C-A 20801381-C-A **
22914661-A-G 20752775-A-G **
22904431-T-C 20742545-T-C **
22843838-T-G 20681952-T-G **
20612860-G-T 18450974-G-T P4_Prx **
20050851-G-A 17938971-G-A P5_Prx **
6967828-G-A 7099787-G-A **
17064803-C-A 14952923-C-A **
17781702-T-C 15669822-T-C **
17548756-C-A 15436876-C-A **
17535561-AGT-A 15423681-AGT-A **
17515386-A-G 15403506-A-G **
17515384-G-A 15403504-G-A **
17515377-G-A 15403497-G-A **
17381217-C-A 15269337-C-A **
17294602-C-A 15182722-C-A **
17278642-C-A 15166762-C-A **
17263320-C-A 15151440-C-A **
17191570-C-A 15079690-C-A **
17134633-C-T 15022753-C-T **
17078730-G-A 14966850-G-A **
16874979-C-A 14763099-C-A **
17922437-C-G 15810557-C-G **
16811098-G-A 14699218-G-A **
16778984-G-T 14667104-G-T **
16778980-C-A 14667100-C-A **
16621999-C-A 14510119-C-A **
16621969-C-A 14510089-C-A **
16619905-C-A 14508025-C-A **
16614674-C-A 14502794-C-A **
16599126-T-G 14487246-T-G **
16598844-A-C 14486964-A-C **
16487311-C-A 14375431-C-A **
16336840-T-G 14224960-T-G **
16063444-C-A 13951564-C-A **
16033374-C-A 13921494-C-A **
17874815-C-A 15762935-C-A **
17978355-C-A 15866475-C-A **
20025510-T-G 17913630-T-G P5_Prx **
18812192-T-G 16700312-T-G **
19935397-A-G 17823517-A-G P5_Prx **
19739304-C-A 17627424-C-A P5_Prx **
19548423-C-A 17436543-C-A **
19482073-C-A 17370193-C-A **
19463998-G-T 17352118-G-T **
19445427-C-A 17333547-C-A **
19422150-C-A 17310270-C-A **
19125691-TCTCA-T 17013811-TCTCA-T **
19059879-C-A 16947999-C-A **
18951163-C-A 16839283-C-A **
18942333-T-C 16830453-T-C **
18925603-C-A 16813723-C-A **
18923369-G-T 16811489-G-T **
18755002-G-T 16643122-G-T **
18071466-C-A 15959586-C-A **
18728629-A-C 16616749-A-C **
18728628-A-C 16616748-A-C **
18724003-T-C 16612123-T-C **
18723015-C-A 16611135-C-A **
18629392-T-C 16517512-T-C **
18616615-C-A 16504735-C-A **
18614427-C-A 16502547-C-A **
18547178-T-G 16435298-T-G **
18528956-G-T 16417076-G-T P6_Dst **
18511187-C-A 16399307-C-A P6_Dst **
18280215-G-A 16168335-G-A P6_Prx **
18233302-G-T 16121422-G-T **
18097954-C-T 15986074-C-T **
7109621-C-A 7241580-C-A **
9559492-TTG-T 9721883-TTG-T IR3_Prx 17×TG**
6825315-A-G 6957274-A-G **
10940303-C-T **
17104312-C-A 14992432-C-A **
24244636-C-A 22098489-C-A P3_b1 **
10004726-C-A 10167117-C-A **
56842940-A-T **
7135189-C-A 7267148-C-A **
16784442-C-A 14672562-C-A **
10748034-T-A **
10748044-T-C **
10748055-C-G **
10963250-C-T **
5785117-T-C 5917076-T-C **
22352472-A-C 20190586-A-C DYZ19 **
56750011-C-G **
10770881-C-T **
2856496-C-A 2988455-C-A **
28674559-C-CT 26528412-C-CT 9×T**
10770884-C-T **
10932745-A-G **
10932742-C-T **
13705494-TG-T 11549818-TG-T **
22995850-C-T 20833964-C-T **
21392601-C-A 19230715-C-A **
11003171-C-A **
15111500-C-A 12999587-C-A **
13461402-G-T 11305726-G-T **
11645862-C-A **
17101741-C-A 14989861-C-A **
10989467-C-A **
10989470-C-G **
21559038-C-A 19397152-C-A **
10989472-C-T **
13487799-T-A 11332123-T-A **
10653471-A-ATTC **
14572988-C-A 12461188-C-A **
6190654-G-T 6322613-G-T IR3_Dst **
16811106-C-A 14699226-C-A **
11027319-T-C **
15221732-C-A 13109818-C-A **
4497464-G-T 4629423-G-T **
3148050-C-A 3280009-C-A **
7058039-C-A 7189998-C-A **
10023666-TTCTC-T 10186057-TTCTC-T **
10947885-C-A **
7775675-C-A 7907634-C-A **
10951773-C-CTT **
10873135-T-C **
11022021-C-T **
15866667-C-A 13754787-C-A **
19415110-C-A 17303230-C-A **
10989455-C-A **
13461477-A-G 11305801-A-G **
15445631-C-A 13333751-C-A **
10652637-ATATTT-C **
19253208-G-T 17141328-G-T **
10967535-T-C **
19206767-AAAAG-A 17094887-AAAAG-A **
10952544-A-C **
20974843-G-T 18812957-G-T P4_Dst **
16514515-C-A 14402635-C-A **
27758918-G-T 25612771-G-T P1_Y2 **
24267288-G-T 22121141-G-T P3_b1 **
13461472-T-A 11305796-T-A **
15940306-CAAAA-C 13828426-CAAAA-C 24×A**
10952542-T-C **
15895361-C-A 13783481-C-A **
10963214-A-C **
10963208-C-T **
10963203-C-T **
10963200-T-C **
13461394-T-G 11305718-T-G **
10932763-T-C **
13461444-G-A 11305768-G-A **
13461433-C-G 11305757-C-G **
7287007-T-G 7418966-T-G **
13461468-C-T 11305792-C-T **
14354460-C-A 12233755-C-A **
2730072-C-A 2862031-C-A **
10963260-C-CTCTGG **
18006582-C-A 15894702-C-A P7_Gap **
8854202-C-A 8986161-C-A **
10836693-C-A **
16869638-AT-A 14757758-AT-A 8×T**
17115034-A-C 15003154-A-C **
18814828-C-A 16702948-C-A **
15061683-C-A 12949775-C-A **
13460782-T-A 11305106-T-A **
3706908-C-A 3838867-C-A **
10654484-C-A **
10688225-C-G **
10800932-C-T **
15626476-G-T 13514596-G-T **
9943477-C-A 10105868-C-A **
56750009-T-A **
15074678-C-A 12962768-C-A **
20920841-C-A 18758955-C-A P4_Dst **
8138264-C-A 8270223-C-A **
16869576-C-A 14757696-C-A **
11676857-G-GAATCA **
14361449-C-A 12240744-C-A **
10989457-C-G **
10872301-C-A **
21457732-G-T 19295846-G-T **
6402525-A-G 6534484-A-G **
5313437-ACCT-A 5445396-ACCT-A 5×CCT**
3732457-C-A 3864416-C-A **
3663374-C-A 3795333-C-A **
8152109-G-T 8284068-G-T **
3286207-C-A 3418166-C-A **
3061114-C-G 3193073-C-G **
20942951-CA-C 18781065-CA-C P4_Dst 13×A**
2959923-C-A 3091882-C-A **
7334008-C-A 7465967-C-A **
2873908-C-A 3005867-C-A **
2867906-CAG-C 2999865-CAG-C **
19162039-C-A 17050159-C-A **
2791461-G-T 2923420-G-T **
58829378-G-T 56761493-C-A **
2791322-T-C 2923281-T-C **
10989433-TCCAC-G **
10963251-C-T **
2652012-A-G 2783971-A-G **
7816427-G-GA 7948386-G-GA 9×A**
16734264-C-A 14622384-C-A **
5967913-G-T 6099872-G-T 8×T**
8735701-C-A 8867660-C-A **
4371923-A-C 4503882-A-C **
18648590-C-A 16536710-C-A **
7853155-C-A 7985114-C-A **
5967937-G-T 6099896-G-T **
6775896-C-A 6907855-C-A **
19039296-T-G 16927416-T-G PF4842 CTS9721 AM01333 **
6773607-C-A 6905566-C-A **
6689474-C-A 6821433-C-A **
6502934-G-T 6634893-G-T **
6471306-C-A 6603265-C-A **
6153265-C-A 6285224-C-A IR3_Dst **
6010499-C-A 6142458-C-A **
19436672-AAAAGAAAGAAAGAAAGAAAG-A 17324792-AAAAGAAAGAAAGAAAGAAAG-A 17×AAAG**
5170228-C-A 5302187-C-A **
5817845-A-G 5949804-A-G **
4578439-C-A 4710398-C-A **
5785199-G-A 5917158-G-A **
4521678-C-G 4653637-C-G Z2124 **
13808139-T-A 11687433-T-A **
5684536-G-A 5816495-G-A **
5613296-C-A 5745255-C-A **
14362040-C-T 12241335-C-T Y66565 **
5054563-C-A 5186522-C-A **
15157728-G-A 13045815-G-A Z15353 **
4951436-C-A 5083395-C-A **
4631547-T-C 4763506-T-C **
14240299-C-A 12119593-C-A **
13461407-C-T 11305731-C-T **
10963182-C-A **
16598929-C-A 14487049-C-A **
15717744-C-A 13605864-C-A **
21127447-C-A 18965561-C-A **
4351458-C-A 4483417-C-A **
17474808-C-A 15362928-C-A **
7417192-C-A 7549151-C-A **
10792784-A-T **
10974787-C-T **
10645851-C-A **
10974786-T-G **
10964754-T-G **
10974773-C-A **
7519042-C-A 7651001-C-A **
16778995-G-T 14667115-G-T **
22615497-C-A 20453611-C-A **
10964748-A-T **
10974752-C-A **
10760728-C-A **
10974750-TTCCACTCCTC-T **
21446301-C-A 19284415-C-A **
13937895-C-A 11817189-C-A **
22916777-C-A 20754891-C-A **
18854070-C-A 16742190-C-A **
18520397-G-T 16408517-G-T P6_Dst **
18188242-C-A 16076362-C-A **
56847532-T-C ***
23347909-C-CT 21186023-C-CT 10×T***
11016930-CACTAAACTCA-C ***
15059529-T-TA 12947621-T-TA 8×A***
28428748-C-A 26282601-C-A P1_gr2 ***
11016932-C-G ***
21971343-C-A 19809457-C-A ***
21250925-C-A 19089039-C-A ***
16852974-G-T 14741094-G-T Y44741Y52433 ***
21876189-GA-G 19714303-GA-G ***
16267512-T-TA 14155632-T-TA 11×A***
56826746-CCATTC-C,CTATTG ***
11016915-C-A ***
22186713-CAA-C,CAAA 20024827-CAA-C,CAAA 16×A***
11033158-C-CGGATG ***
21477695-C-T 19315809-C-T ***
11033168-C-G ***
21363429-A-AT 19201543-A-AT 9×T***
11033179-A-T ***
21486331-C-A 19324445-C-A ***
28803678-T-A 26657531-T-A ***
19044813-T-A 16932933-T-A CTS9731 M3369 PF3033 9×A***
13468227-C-T 11312551-C-T ***
22555388-C-A 20393502-C-A ***
19403541-A-G 17291661-A-G ***
13463860-C-A,G 11308184-C-A,G ***
22932528-A-G 20770642-A-G ***
22845138-C-A 20683252-C-A ***
21318475-C-A 19156589-C-A ***
22793334-C-A 20631448-C-A ***
19511876-AT-A 17399996-AT-A 9×T***
10799642-C-G ***
23267750-G-GA 21105864-G-GA 10×A***
19447662-C-A 17335782-C-A ***
13478460-C-G 11322784-C-G ***
21062049-C-A 18900163-C-A ***
19439485-C-A 17327605-C-A ***
23476142-A-G 21314256-A-G FGC62446 ***
21087749-C-A 18925863-C-A ***
19267986-A-T 17156106-A-T ***
13487776-G-C 11332100-G-C ***
13487815-A-T 11332139-A-T ***
18911458-C-A 16799578-C-A ***
21228160-C-A 19066274-C-A ***
22564283-C-A 20402397-C-A ***
22730735-C-A 20568849-C-A ***
18927014-C-A 16815134-C-A ***
8703659-A-ATT 8835618-A-ATT 18×T***
22970282-C-CAA 20808396-C-CAA 27×A***
19265590-C-CAG 17153710-C-CAG 9×AG***
28786678-GGAA-G 26640531-GGAA-G ***
23529832-C-A 21367946-C-A ***
10961355-C-A ***
19127206-C-A 17015326-C-A ***
19212924-C-A 17101044-C-A ***
19215125-C-A 17103245-C-A ***
10799619-C-G ***
10776011-A-T ***
18558260-C-A 16446380-C-A ***
21457671-G-T 19295785-G-T ***
24378783-C-A 22232636-C-A ***
16704939-G-T 14593059-G-T ***
8273822-C-A 8405781-C-A ***
10775990-C-G ***
10775992-T-A ***
22177679-C-A 20015793-C-A ***
10800853-T-C ***
10825305-C-A ***
13478477-A-T 11322801-A-T ***
10776861-C-A ***
10852589-C-A ***
10911338-G-A ***
2656493-C-A 2788452-C-A ***
8748289-C-A 8880248-C-A ***
27435850-CAAA-C 25289703-CAAA-C P1_Y2 15×A***
10930705-C-A ***
10932698-T-C ***
14425767-C-A 12305042-C-A ***
10694088-TCCATG-T ***
10974813-C-A ***
10988658-G-C,T ***
10992638-A-G ***
11018264-A-G ***
11033567-C-A ***
13196095-C-A 11040419-C-A ***
10673795-T-C ***
2760126-C-A 2892085-C-A ***
13310049-C-A 11154373-C-A ***
4918496-C-A 5050455-C-A ***
7014279-C-A 7146238-C-A ***
7028525-C-A 7160484-C-A ***
7053116-C-A 7185075-C-A ***
7252437-C-A 7384396-C-A ***
6131648-C-A 6263607-C-A ***
7291592-G-T 7423551-G-T ***
5968120-C-A 6100079-C-A ***
7358063-G-A 7490022-G-A ***
7365595-C-A 7497554-C-A ***
7471557-C-A 7603516-C-A IR1_L ***
7709007-C-A 7840966-C-A ***
7852530-C-A 7984489-C-A ***
7970871-TT-T,TA 8102830-TT-T,TA ***
9879331-G-T 10041722-G-T ***
4561241-C-A 4693200-C-A ***
8019858-T-TC 8151817-T-TC ***
8235304-A-T 8367263-A-T ***
8287813-C-A 8419772-C-A ***
3663232-C-A 3795191-C-A ***
8735039-G-A 8866998-G-A ***
8748287-C-A 8880246-C-A ***
9124557-G-T ***
2892191-C-A 3024150-C-A ***
9391292-C-A 9553683-C-A ***
9900478-G-GTA 10062869-G-GTA ***
9754440-G-T 9916831-G-T ***
13294186-C-A 11138510-C-A ***
13474345-C-A 11318669-C-A ***
18264929-C-A 16153049-C-A ***
10694029-C-G ***
15175101-C-A 13063187-C-A ***
15176227-C-T 13064313-C-T ***
15281053-C-A 13169152-C-A ***
15391447-C-A 13279567-C-A ***
15394177-T-C 13282297-T-C ***
6870731-C-A 7002690-C-A ***
10694068-A-T ***
15561913-C-A 13450033-C-A ***
10694064-C-T ***
10694062-C-A ***
15749696-C-A 13637816-C-A ***
15874319-CAA-C,CAAA 13762439-CAA-C,CAAA 15×A***
15128283-C-A 13016370-C-A ***
16174000-C-A 14062120-C-A ***
16178782-C-A 14066902-C-A ***
16258203-C-A 14146323-C-A ***
28793772-T-C 26647625-T-C ***
17885528-C-A 15773648-C-A ***
16737183-C-A 14625303-C-A ***
11676856-A-G ***
17044467-C-A 14932587-C-A ***
11676828-A-G ***
17211178-TG-T 15099298-TG-T ***
23258041-T-TA 21096155-T-TA 9×A***
17875385-A-G 15763505-A-G ***
13460787-C-A 11305111-C-A ***
15323398-C-A 13211516-C-A ***
18897113-C-A 16785233-C-A ***
13487782-C-A 11332106-C-A ***
13482866-G-A 11327190-G-A ***
10694078-T-G ***
11675646-C-A ***
6757346-C-A 6889305-C-A ***
6757885-G-T 6889844-G-T ***
14055387-C-A 11934681-C-A ***
21801527-G-GA 19639641-G-GA 10×A***
10878168-C-A ***
14221267-C-A 12100561-C-A ***
14264508-C-A 12143802-C-A ***
14326369-A-G 12205663-A-G ***
15230842-C-CTT 13118928-C-CTT 13×T***
14454524-A-G 12333797-A-G ***
15057188-CTT-C 12945280-CTT-C ***
13315765-C-A 11160089-C-A ***
14464156-C-A 12343429-C-A ***
14471432-C-A 12350701-C-A ***
14358129-C-T 12237424-C-T ***
14519712-C-A 12407913-C-A ***
14358119-CTG-C 12237414-CTG-C ***
14594750-C-A 12482950-C-A ***
14627706-C-A 12515774-C-A ***
23824088-C-A 21662202-C-A ***
14766438-GATTTTTGTCAAATTATTTATTATATATGTT-G 12654507-GATTTTTGTCAAATTATTTATTATATATGTT-G ***
18128207-CAAA-C,CAA 16016327-CAAA-C,CAA 16×A***
17038241-ATTT-A 14926361-ATTT-A 13×T***
22510345-T-C 20348459-T-C BY53400 DYZ19 ***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.

Age Analysis Information (work in progress)

AllMcDonaldYFull
Kit: 353007863012670647457014506
Used in age calculations863012670647457014506
Counts of SNPs11
Variant counts last updated 2019-11-12 02:51:24.


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