Tree Position

R-P312/S116 > Z40481 > ZZ11 > DF27/S250 > ZZ12 > Z46512 > FGC20747 > BY3330 > CTS5329

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19) POS-REF-ALT (hg38) Blocks Names Region McDonald BED combBED STRBigY2
628105
13687103-G-T 11531427-G-T A*
6264446-C-A 6396405-C-A IR3_Dst A*
26095519-C-G 23949372-C-G P1_Y1 A*
26459725-G-C 24313578-G-C P1_Y1 A*
19786301-A-G 17674421-A-G P5_Prx A*
19601975-G-A 17490095-G-A P5_Prx YA*
13844143-G-A 11723437-G-A BY91234 +
6791415-G-A 6923374-G-A BY61330 Y+
6944133-C-T 7076092-C-T BY62437 YY+
18674-C-T +
7128738-T-C 7260697-T-C BY63428 YY+
6736485-C-T 6868444-C-T BY60969 YY+
7748780-C-T 7880739-C-T BY67340 YY+
7843071-T-A 7975030-T-A BY68141 YY+
23069929-T-C 20908043-T-C BY142735 YY+
8386820-C-T 8518779-C-T BY72213 YY+
19356783-G-A 17244903-G-A BY128436 YY+
18944069-C-T 16832189-C-T BY124980 YY+
19276153-A-G 17164273-A-G BY127874 YY+
24398795-C-G 22252648-C-G BY149604 Y+
18396602-C-G 16284722-C-G BY121673 P6_Gap +
14173549-G-T 12052843-G-T BY54596 YY+
18248341-A-G 16136461-A-G BY121171 Y+
2662399-G-T 2794358-G-T BY55725 YY+
14249086-A-T 12128380-A-T BY94335 YY+
18077506-A-G 15965626-A-G BY119767 YY+
17919142-G-A 15807262-G-A BY118426 YY+
17658098-C-T 15546218-C-T BY116406 YY+
14637630-C-T 12525699-C-T FGC55842 YY+
14766996-A-AT 12655065-A-AT +
16606807-A-C 14494927-A-C BY108949 YY+
8491164-C-G 8623123-C-G BY156020 YY+
21645864-C-T 19483978-C-T BY134426 YY+
8747840-A-G 8879799-A-G Y87893 Z45757 YY+
9437636-G-A 9600027-G-A BY79389 YY+
12904-G-C +
8873434-G-A 9005393-G-A BY76514 FGC25828 Y+
9759862-T-C 9922253-T-C BY80836 Y+
15481759-A-G 13369879-A-G BY101871 YY+
22281620-T-C 20119734-T-C DYZ19 *
22277174-A-T 20115288-A-T DYZ19 *
28810984-C-T 26664837-C-T *
2763795-C-CA 2895754-C-CA 8×A*
22303247-T-A 20141361-T-A BY217005 DYZ19 *
14395691-T-G 12274987-T-G **
14356361-C-A 12235656-C-A **
14293641-A-C 12172935-A-C **
10834822-A-T **
10834831-C-T **
10834845-C-G **
10874821-A-T **
14397651-C-G 12276947-C-G **
14228694-C-A 12107988-C-A **
10834853-T-G **
10834862-A-T **
10835241-C-A **
14226501-C-A 12105795-C-A **
10837564-G-T **
10843933-C-A **
10834816-A-T **
14526618-T-A 12414819-T-A **
14397671-A-C 12276967-A-C **
14832069-G-A 12720136-G-A **
15173555-G-T 13061641-G-T **
15128074-G-T 13016161-G-T **
15084700-G-C 12972790-G-C **
15081015-C-A 12969105-C-A **
15073101-A-C 12961191-A-C **
10907336-G-T **
15044999-C-A 12933089-C-A **
14795053-C-A 12683124-C-A **
14457099-G-T 12336372-G-T **
14793592-G-T 12681663-G-T **
10916364-C-T **
14743017-C-A 12631085-C-A **
10830221-A-T **
14567679-T-C 12455879-T-C **
14533388-C-A 12421589-C-A **
10844863-C-T **
13941759-C-A 11821053-C-A **
10844873-C-G **
13902919-C-G 11782213-C-G **
10947023-T-C **
10990073-T-G **
10987042-A-T **
10955548-C-A **
10952899-A-C **
10948658-T-A **
10947777-G-T **
10860161-C-T **
11006305-C-A **
10940983-C-T **
10936476-C-A **
10920821-C-A **
10930329-C-A **
10926173-C-A **
10924432-C-A **
10924198-C-A **
15746290-C-A 13634410-C-A **
11016486-C-T **
10874811-A-T **
13566784-A-C 11411108-A-C **
10844889-A-C **
10844909-T-C **
10901877-A-C **
10855760-T-A **
11650800-C-A **
10856432-C-A **
13579532-A-AC 11423856-A-AC **
10857225-T-C **
11025098-C-G **
13565572-C-A 11409896-C-A **
13445182-G-T 11289506-G-T **
10877097-C-A **
13442458-T-A 11286782-T-A **
13395104-G-A 11239428-G-A **
11034445-G-T **
11031800-C-G **
10846170-C-A **
16952640-C-A 14840760-C-A **
15887529-T-C 13775649-T-C **
22965344-C-A 20803458-C-A **
24924355-C-A 22778208-C-A g1 **
24402385-C-A 22256238-C-A **
23786422-C-A 21624536-C-A **
23512387-G-T 21350501-G-T **
23434440-C-A 21272554-C-A **
23293599-TA-T 21131713-TA-T **
23086511-G-T 20924625-G-T **
23062759-C-A 20900873-C-A **
22980530-C-A 20818644-C-A **
22808845-C-A 20646959-C-A **
25994998-G-T 23848851-G-T P1_Y1 **
22730614-A-G 20568728-A-G **
22513247-C-A 20351361-C-A **
22485248-C-A 20323362-C-A DYZ19 **
22205533-A-C 20043647-A-C **
22202526-G-A 20040640-G-A **
22170046-A-C 20008160-A-C **
22085336-C-A 19923450-C-A **
22017997-T-TAA 19856111-T-TAA 10×A**
22013213-G-C 19851327-G-C **
24942991-A-G 22796844-A-G g1 **
26192921-T-G 24046774-T-G P1_Y1 **
21681659-A-C 19519773-A-C **
28715041-C-A 26568894-C-A **
56883996-C-T **
56862426-G-T **
28819340-G-C 26673193-G-C **
28819335-G-C 26673188-G-C **
28776260-C-A 26630113-C-A **
28744941-C-A 26598794-C-A **
28741171-C-A 26595024-C-A **
28725244-C-A 26579097-C-A **
28722379-G-T 26576232-G-T **
28710856-C-A 26564709-C-A **
27750038-A-G 25603891-A-G P1_Y2 **
28665616-C-A 26519469-C-A **
28637090-T-C 26490943-T-C **
28634938-C-A 26488791-C-A **
28627982-G-T 26481835-G-T **
28595920-A-C 26449773-A-C **
28549841-G-T 26403694-G-T **
28548956-G-T 26402809-G-T **
27906830-G-A 25760683-G-A P1_Y2 **
27759131-T-A 25612984-T-A P1_Y2 **
21875016-G-GA 19713130-G-GA **
21580551-A-T 19418665-A-T **
15937247-T-A 13825367-T-A **
10821696-C-A **
17730424-C-A 15618544-C-A **
17654113-C-A 15542233-C-A **
17548108-C-A 15436228-C-A **
17503989-C-A 15392109-C-A **
17486353-G-T 15374473-G-T **
17377773-G-T 15265893-G-T **
17372292-C-A 15260412-C-A **
17122398-C-A 15010518-C-A **
17095703-C-A 14983823-C-A **
16930273-T-G 14818393-T-G **
17854424-C-A 15742544-C-A **
16654440-G-A 14542560-G-A **
16625078-G-T 14513198-G-T **
16621198-C-A 14509318-C-A **
16603302-AT-A 14491422-AT-A **
16430977-C-A 14319097-C-A **
16425025-C-T 14313145-C-T **
16102013-TTTG-T 13990133-TTTG-T P8_Prx **
16002264-A-G 13890384-A-G **
15971266-T-G 13859386-T-G **
17737539-G-C 15625659-G-C **
18151944-G-T 16040064-G-T **
21534739-G-T 19372853-G-T **
20307931-C-A 18146045-C-A P5_Dst **
21458588-A-G 19296702-A-G **
21375885-C-A 19213999-C-A **
21281104-A-G 19119218-A-G **
21262753-A-C 19100867-A-C **
21061788-C-A 18899902-C-A **
20760914-T-C 18599028-T-C P4_Prx **
20511043-G-T 18349157-G-T P5_Dst **
20424025-T-A 18262139-T-A P5_Dst **
20423970-GTT-G 18262084-GTT-G P5_Dst **
19848169-G-C 17736289-G-C P5_Prx **
18151992-C-T 16040112-C-T **
19562631-G-C 17450751-G-C **
19557278-C-A 17445398-C-A **
19556476-C-A 17444596-C-A **
19301539-G-T 17189659-G-T **
19030072-T-TAA 16918192-T-TAA 13×A**
18847833-G-T 16735953-G-T **
18290807-C-A 16178927-C-A P6_Prx **
18281927-A-T 16170047-A-T P6_Prx **
18186730-C-A 16074850-C-A **
10829787-C-A **
15936935-C-T 13825055-C-T CTS4980 Z2782 **
19537901-C-CAA 17426021-C-CAA 17×A**
3229029-C-A 3360988-C-A **
11659781-C-A **
6148767-T-A 6280726-T-A IR3_Dst **
10937492-A-T **
10934368-C-A **
3200883-C-A 3332842-C-A **
28819336-G-T 26673189-G-T **
7383621-C-A 7515580-C-A **
23142288-C-A 20980402-C-A **
26435139-C-A 24288992-C-A P1_Y1 **
23818282-C-A 21656396-C-A **
9321878-C-A 9484269-C-A **
6029105-C-A 6161064-C-A **
14764929-T-TG 12652998-T-TG **
10967480-G-T **
4756562-C-A 4888521-C-A **
10660952-G-T **
5081047-C-A 5213006-C-A **
10875944-A-T **
10773460-C-A **
13258624-C-A 11102948-C-A **
21130587-CAAATAAAT-C 18968701-CAAATAAAT-C 11×AAAT**
10862735-T-C **
10988093-C-A **
3518411-C-A 3650370-C-A **
4185695-C-A 4317654-C-A **
4133856-T-C 4265815-T-C **
4120519-G-T 4252478-G-T **
3947005-G-T 4078964-G-T **
3861279-C-A 3993238-C-A **
3822809-C-A 3954768-C-A **
3748245-G-T 3880204-G-T **
10811139-C-A **
3685311-G-T 3817270-G-T **
3500662-A-C 3632621-A-C **
17633223-C-A 15521343-C-A **
3475710-G-T 3607669-G-T **
3216023-C-A 3347982-C-A **
3184079-G-T 3316038-G-T **
3146828-G-T 3278787-G-T **
3138776-G-T 3270735-G-T **
2952003-T-A 3083962-T-A **
2785193-C-A 2917152-C-A **
2772915-T-G 2904874-T-G **
2708678-C-A 2840637-C-A **
28510281-C-A 26364134-C-A **
22881330-C-A 20719444-C-A **
10952884-A-C **
4392940-G-T 4524899-G-T **
10663787-A-G **
10940966-C-A **
28715034-C-A 26568887-C-A **
17876436-GT-G 15764556-GT-G 8×T**
10802218-CTCCAT-C **
10666708-G-T **
16636843-C-A 14524963-C-A **
22587920-C-A 20426034-C-A **
7918340-C-A 8050299-C-A **
18195999-GTATA-G 16084119-GTATA-G **
5004420-G-T 5136379-G-T **
7704821-C-A 7836780-C-A **
9514205-C-A 9676596-C-A **
10896459-G-T **
16550948-C-A 14439068-C-A **
18059424-G-T 15947544-G-T **
28631556-C-A 26485409-C-A **
6623102-C-A 6755061-C-A **
22011557-CAAAAA-C 19849671-CAAAAA-C 21×A**
17122376-C-A 15010496-C-A **
25988137-C-A 23841990-C-A P1_Y1 **
4271267-C-A 4403226-C-A **
24359587-C-CAA 22213440-C-CAA 13×A**
6492525-C-A 6624484-C-A **
2948865-C-A 3080824-C-A **
28819301-G-T 26673154-G-T **
28481190-C-A 26335043-C-A **
15622632-T-A 13510752-T-A **
3268045-C-A 3400004-C-A **
18756302-G-T 16644422-G-T **
10871186-C-A **
13937368-C-A 11816662-C-A **
10791401-C-A **
10663789-C-T **
10976293-C-A **
14764942-C-CAG 12653011-C-CAG **
10983663-C-A **
10976245-C-T **
10861330-C-A **
6930624-C-A 7062583-C-A **
17561389-C-A 15449509-C-A **
28806496-G-T 26660349-G-T **
19302922-G-T 17191042-G-T **
4179267-C-A 4311226-C-A **
10992354-C-A **
21839939-C-CTT 19678053-C-CTT 17×T**
4307701-G-T 4439660-G-T **
3728906-T-G 3860865-T-G **
4430445-G-A 4562404-G-A **
7500902-G-T 7632861-G-T IR1_L **
8056329-C-A 8188288-C-A **
8043218-G-C 8175177-G-C **
7970318-C-A 8102277-C-A **
7755243-A-T 7887202-A-T **
7534664-A-C 7666623-A-C **
7500960-G-T 7632919-G-T IR1_L **
7500944-C-A 7632903-C-A IR1_L **
7500926-G-T 7632885-G-T IR1_L **
7500893-G-T 7632852-G-T IR1_L **
8661266-T-A 8793225-T-A **
7463937-G-T 7595896-G-T IR1_L **
7428125-G-T 7560084-G-T **
4448628-C-A 4580587-C-A **
7248057-T-G 7380016-T-G **
7204932-G-A 7336891-G-A **
7156626-C-T 7288585-C-T **
7135227-G-T 7267186-G-T **
7114326-G-T 7246285-G-T **
7107379-C-A 7239338-C-A **
8072373-C-A 8204332-C-A **
8661278-A-C 8793237-A-C **
6808099-G-T 6940058-G-T **
10671631-C-G **
10806264-C-A **
10779726-C-A **
10775053-T-C **
10775040-C-G **
10764107-C-A **
10761220-A-T **
10760769-C-T **
10745330-C-A **
10691952-C-A **
10663832-C-G **
8856594-C-A 8988553-C-A **
10663781-C-G **
10661559-C-A **
10053588-T-G 10215979-T-G **
9962618-C-A 10125009-C-A **
9929947-G-A 10092338-G-A **
9910391-G-T 10072782-G-T **
9514239-C-A 9676630-C-A **
9411414-C-A 9573805-C-A **
9123461-T-C **
6881279-C-A 7013238-C-A **
7390160-C-A 7522119-C-A **
10814032-C-A **
5004240-C-A 5136199-C-A **
4630166-T-G 4762125-T-G **
4679934-T-G 4811893-T-G **
4756533-C-A 4888492-C-A FT60747 **
5789650-C-A 5921609-C-A **
5755129-C-A 5887088-C-A **
5736483-C-A 5868442-C-A **
4940404-C-A 5072363-C-A **
5004230-C-A 5136189-C-A **
5004241-A-T 5136200-A-T **
4585419-A-C 4717378-A-C **
5004259-G-C 5136218-G-C **
5004432-G-T 5136391-G-T **
5067281-C-G 5199240-C-G **
5151273-G-T 5283232-G-T **
5714269-T-G 5846228-T-G **
5172275-C-A 5304234-C-A **
5707229-C-A 5839188-C-A **
5491018-G-T 5622977-G-T **
4610064-C-A 4742023-C-A **
5562719-C-A 5694678-C-A **
5559364-C-A 5691323-C-A **
6092095-C-A 6224054-C-A **
6405340-G-T 6537299-G-T **
6401572-C-A 6533531-C-A **
6752400-C-A 6884359-C-A **
5806843-C-T 5938802-C-T **
6283684-C-A 6415643-C-A IR3_Dst **
4496559-A-G 4628518-A-G **
6458676-T-C 6590635-T-C **
6808091-C-G 6940050-C-G **
6089958-C-A 6221917-C-A **
6078443-C-A 6210402-C-A **
5967137-C-A 6099096-C-A **
5934375-C-A 6066334-C-A **
5849936-T-A 5981895-T-A **
6666225-G-T 6798184-G-T **
16703659-G-T 14591779-G-T ***
56839691-T-A ***
10821889-C-CTGCAG ***
10821904-C-CTAAAG ***
16643402-C-A 14531522-C-A ***
16351954-C-T 14240074-C-T ***
10776010-C-CGGATG ***
21262423-C-A 19100537-C-A ***
9852982-GAAAGAGA-G 10015373-GAAAGAGA-G ***
23097512-G-GA,GAA 20935626-G-GA,GAA 13×A***
13493776-C-A 11338100-C-A ***
21584371-C-A 19422485-C-A ***
21853790-C-AA 19691904-C-AA ***
7256093-GA-G,GAAA 7388052-GA-G,GAAA 18×A***
19135257-G-T 17023377-G-T ***
11005148-C-A ***
14473738-CAA-C,CA 12353007-CAA-C,CA 14×A***
56846289-C-T ***
18937610-G-T 16825730-G-T ***
7768769-C-A 7900728-C-A ***
4433673-C-A 4565632-C-A ***
9013257-CA-C,CAA 9175648-CA-C,CAA 18×A***
23401395-A-G 21239509-A-G ***
8399139-C-A 8531098-C-A ***
10988592-TTTCATTCCAC-T,TTACAGTCCAC ***
23761608-A-AGAAAAG 21599722-A-AGAAAAG 23×AAG***
21212419-TCAG-T 19050533-TCAG-T ***
23761611-G-A 21599725-G-A ***
10909740-C-G ***
10909669-C-A ***
2758196-C-A 2890155-C-A ***
10970980-C-A ***
23761609-A-G 21599723-A-G ***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.

Age Analysis Information (work in progress)

AllMcDonaldYFull
Kit: 628105991436480568757922554
Used in age calculations991436480568757922554
Counts of SNPs2626
Variant counts last updated 2019-11-29 02:42:53.



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