Tree Position

R-P312/S116 > Z40481 > ZZ11 > DF27/S250 > ZZ12 > Z46512 > FGC78762 > ZZ19 > Z31644 > A4041 > BY33282

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19) POS-REF-ALT (hg38) Blocks Names Region McDonald BED combBED STRBigY3
774112
BigY2
774112
25112084-C-G 22965937-C-G g1 A+
56826630-T-C A*
20043725-C-G 17931845-C-G P5_Prx A*
13479159-C-A 11323483-C-A A*
19671051-T-G 17559171-T-G P5_Prx A*
19712534-G-A 17600654-G-A P5_Prx A*A*
19589024-T-A 17477144-T-A P5_Prx YA*A*
13451208-A-G 11295532-A-G A*
6317839-A-G 6449798-A-G IR3_Dst A*A*
16097856-C-T 13985976-C-T P8_Prx A*
19794469-A-G 17682589-A-G P5_Prx A*
19961010-C-T 17849130-C-T P5_Prx A*
13686980-C-T 11531304-C-T A*
20218767-G-A 18056881-G-A P5_Dst A*
20584415-C-T 18422529-C-T P5_Dst A*
20467239-C-T 18305353-C-T P5_Dst A*
20385311-T-C 18223425-T-C P5_Dst A*
26066581-G-A 23920434-G-A P1_Y1 A*A*
20590749-A-T 18428863-A-T P5_Dst A*
26085246-G-A 23939099-G-A P1_Y1 A*A*
21206961-A-AT 19045075-A-AT +**
13294110-G-C 11138434-G-C FT44682 +**
21990920-A-C 19829034-A-C FT25824 YY+**
22445212-A-T 20283326-A-T BY219576 DYZ19 ++
22287887-G-A 20126001-G-A DYZ19 **+
22471654-T-A 20309768-T-A BY33279 DYZ19 **+
22514170-A-AT 20352284-A-AT 8×T+*
22662965-C-G 20501079-C-G Y129782 YY++
21296649-G-A 19134763-G-A FT99603 YY+
23116612-A-G 20954726-A-G Y129998 BY33281 YY++
23759792-A-G 21597906-A-G Y130061 Y++
21143977-A-G 18982091-A-G Y129647 YY++
3286117-T-C 3418076-T-C BY57549 ++
13717327-A-G 11561651-A-G BY33274 ++
19322270-A-T 17210390-A-T Y128777 YY++
18785236-G-T 16673356-G-T Y128393 BY33277 YY++
18202368-T-C 16090488-T-C Y128923 BY33276 YY++
18176285-A-G 16064405-A-G Y130283 BY33275 YY++
18168301-C-G 16056421-C-G Y130238 YY++
23864324-A-G 21702438-A-G BY33284 Y++
6739978-C-A 6871937-C-A Y128418 BY33272 YY++
17605851-A-G 15493971-A-G Y129851 YY++
14492023-C-T 12380220-C-T L639 YY++
16670798-T-A 14558918-T-A Y128519 YY++
16670797-T-C 14558917-T-C Y130190 YY++
16351425-A-C 14239545-A-C FGC61228 YY+**
7891455-G-A 8023414-G-A Y128378 YY++
23806341-T-C 21644455-T-C BY33283 Y129056 Y++
21562305-T-C 19400419-T-C Y129293 BY33278 YY++
18980303-T-G 16868423-T-G FT99554 YY+
14075744-C-T 11955038-C-T FT21029 Y+
3445757-T-C 3577716-T-C FT15291 +
6330115-CA-C 6462074-CA-C IR3_Dst 18×A+
5630956-C-T 5762915-C-T FT17819 +
6596946-G-A 6728905-G-A FT18621 +
10774848-GC-G +
3224188-T-A 3356147-T-A FT15036 +
3565037-C-T 3696996-C-T FT98766 +
28481445-G-A 26335298-G-A FT27074 +
14795811-C-T 12683882-C-T FT99333 Y+
3860598-G-A 3992557-G-A *
10845697-ATTCCATTCCC-A,ATTCCATTCCA *
2934345-C-T 3066304-C-T *
22320012-G-C 20158126-G-C DYZ19 **
13478998-G-T 11323322-G-T **
14847020-AAAAAG-A 12735086-AAAAAG-A **
15066403-C-T 12954494-C-T **
15369292-C-A 13257412-C-A **
15536341-C-A 13424461-C-A **
15574996-G-T 13463116-G-T **
15655076-C-T 13543196-C-T **
19694702-A-G 17582822-A-G P5_Prx **
19631030-A-C 17519150-A-C P5_Prx **
15686044-C-A 13574164-C-A **
15742151-A-C 13630271-A-C **
16481022-T-A 14369142-T-A **
15770613-T-C 13658733-T-C **
15952744-C-A 13840864-C-A **
19785796-C-A 17673916-C-A P5_Prx **
16213592-C-A 14101712-C-A **
16241743-T-C 14129863-T-C **
16430985-T-G 14319105-T-G **
16270923-G-T 14159043-G-T **
15779943-A-C 13668063-A-C **
28743150-C-A 26597003-C-A **
14819713-C-A 12707780-C-A **
14066987-C-A 11946281-C-A **
13360821-C-A 11205145-C-A **
13457741-C-G 11302065-C-G **
13472256-C-T 11316580-C-T **
13474710-G-A 11319034-G-A **
13477790-T-G 11322114-T-G **
13489344-T-A 11333668-T-A **
13491063-T-G 11335387-T-G **
13705406-A-C 11549730-A-C **
22972838-A-T 20810952-A-T **
13885683-G-A 11764977-G-A **
13974005-C-A 11853299-C-A **
14073601-C-A 11952895-C-A **
14757685-C-A 12645754-C-A **
14088839-C-T 11968133-C-T **
14106945-A-C 11986239-A-C **
14149418-C-A 12028712-C-A **
14180956-C-A 12060250-C-A **
14284928-C-T 12164222-C-T **
14327103-T-A 12206397-T-A **
14364099-G-T 12243394-G-T **
14384312-C-A 12263608-C-A **
12370682-T-G **
20510941-A-T 18349055-A-T P5_Dst **
14512011-C-A 12400216-C-A **
17032477-C-A 14920597-C-A **
14557968-A-C 12446169-A-C **
17638279-C-A 15526399-C-A **
17135861-C-A 15023981-C-A **
23464880-G-T 21302994-G-T **
20448893-G-GGTGTGT 18287007-G-GGTGTGT P5_Dst **
22472132-G-A 20310246-G-A DYZ19 **
16585-T-G **
22542490-T-G 20380604-T-G **
22658223-A-T 20496337-A-T **
56832959-C-CATTCCA **
23047538-C-A 20885652-C-A **
23056217-A-C 20894331-A-C **
56771163-G-T **
56734805-G-T **
28812323-T-A 26666176-T-A **
22167292-C-A 20005406-C-A **
28798698-G-C 26652551-G-C **
23808078-C-A 21646192-C-A **
28794475-C-A 26648328-C-A **
24278313-AGGGAGGGAGGGAGGGAG-A 22132166-AGGGAGGGAGGGAGGGAG-A P3_b1 **
24535282-C-T 22389135-C-T P3_t2 **
26084822-G-T 23938675-G-T P1_Y1 **
27872607-C-T 25726460-C-T P1_Y2 **
27872609-G-C 25726462-G-C P1_Y2 **
27872628-G-C 25726481-G-C P1_Y2 **
27872635-C-A 25726488-C-A P1_Y2 **
27872639-C-T 25726492-C-T P1_Y2 **
22170950-A-G 20009064-A-G **
22128758-T-C 19966872-T-C **
17146608-C-A 15034728-C-A **
18491743-C-T 16379863-C-T P6_Dst **
17580117-A-C 15468237-A-C **
17634630-A-C 15522750-A-C **
14191422-G-A 12070716-G-A **
28531952-T-G 26385805-T-G **
17854349-T-G 15742469-T-G **
17884553-ACAAAAGAAG-A 15772673-ACAAAAGAAG-A **
18014691-G-T 15902811-G-T P7_Dst **
18130539-A-C 16018659-A-C **
13476417-A-G 11320741-A-G **
10912573-A-T **
18606294-C-A 16494414-C-A **
22078385-C-A 19916499-C-A **
19074986-C-A 16963106-C-A **
19206741-TAAAAAAAAAA-T 17094861-TAAAAAAAAAA-T 29×A**
19577911-G-T 17466031-G-T P5_Prx **
4431959-T-C 4563918-T-C **
19623684-G-T 17511804-G-T P5_Prx **
19623734-C-A 17511854-C-A P5_Prx **
20230539-G-T 18068653-G-T P5_Dst **
20613609-C-CTG 18451723-C-CTG P4_Prx 13×T**
11018733-A-G **
21946520-C-A 19784634-C-A **
21795964-T-C 19634078-T-C **
11021347-CTCTCTACTGCATTCC-A **
13472243-T-C 11316567-T-C **
11014612-A-C **
18707123-C-A 16595243-C-A **
56771158-G-T **
11015894-AT-A **
16505968-C-A 14394088-C-A **
14453709-GAAAA-G 12332982-GAAAA-G 18×A**
23059646-C-A 20897760-C-A **
11665800-C-A **
5313497-T-C 5445456-T-C **
10791202-A-T **
10694078-T-G **
8036211-C-A 8168170-C-A **
14263316-A-C 12142610-A-C **
8333620-T-C 8465579-T-C **
7188331-T-G 7320290-T-G **
18853559-C-A 16741679-C-A **
13857117-C-G 11736411-C-G **
10896340-T-A **
10807399-G-C **
22659306-C-A 20497420-C-A **
4049186-C-A 4181145-C-A **
11668901-C-A **
2758279-G-C 2890238-G-C **
7384738-A-C 7516697-A-C **
23720493-T-A 21558607-T-A **
25525621-T-G 23379474-T-G P1_gr1 **
10744234-T-G **
11012298-C-A **
11643814-G-C **
10744270-T-C **
24931833-C-A 22785686-C-A g1 **
13857119-C-A 11736413-C-A **
21324069-G-T 19162183-G-T **
10763054-T-G **
4241838-C-A 4373797-C-A **
9482224-G-T 9644615-G-T **
23825770-AAAAAT-A 21663884-AAAAAT-A **
10890333-T-G **
14395687-C-A 12274983-C-A **
21202529-C-A 19040643-C-A **
10980696-C-A **
3047472-C-A 3179431-C-A **
10868111-T-G **
14468281-C-A 12347550-C-A **
9082281-C-A 9244672-C-A **
10658398-C-CATTAA **
14607969-C-G 12496171-C-G **
10987973-C-A **
10760985-G-C **
9030347-AG-A 9192738-AG-A **
19544553-C-A 17432673-C-A **
10791145-G-T **
6267692-AGAC-A 6399651-AGAC-A IR3_Dst **
18831636-C-A 16719756-C-A **
15776976-C-A 13665096-C-A **
10762999-T-A **
13489361-G-A 11333685-G-A **
23196644-AC-A 21034758-AC-A **
9832403-G-T 9994794-G-T **
3550572-CTCA-C 3682531-CTCA-C **
6457865-C-A 6589824-C-A **
11643743-G-T **
10980693-T-C **
24407329-G-T 22261182-G-T **
10980659-G-A **
10791161-A-C **
10791140-G-C **
10791123-C-T **
11014572-A-C **
10883919-T-C **
24929402-G-A 22783255-G-A g1 **
16297424-C-A 14185544-C-A **
10744242-C-T **
10694064-C-T **
10759407-G-A **
14519519-C-A 12407720-C-A **
10789341-A-T **
10763018-T-G **
10762978-T-A **
10673915-T-A **
10785708-C-A **
2881514-C-A 3013473-C-A **
10744231-C-A **
10747994-T-A **
10763028-T-TTCAC **
9437251-T-C 9599642-T-C **
9771052-CTA-C 9933443-CTA-C **
10987933-C-G **
10022026-T-G 10184417-T-G **
10656310-C-A **
10973206-T-A **
10686083-C-T **
10965132-C-A **
10924735-T-G **
10746722-C-G **
3138939-C-A 3270898-C-A **
10899080-C-G **
10748008-T-TTCAAG **
10763028-T-A **
10896350-TTCCCC-T **
8776613-G-T 8908572-G-T **
10880288-A-T **
10883933-A-T **
10883932-A-C **
10883908-A-ATCCTG **
10883898-A-G **
10883868-A-C **
10885104-T-C **
10845697-ATTCCATTCCC-A **
10763040-C-G **
10841116-C-A **
10795681-C-A **
10791194-TCCATC-T **
10787345-C-G **
10770633-C-A **
10767666-C-T **
10883947-T-C **
9063849-C-A 9226240-C-A **
7717912-C-A 7849871-C-A **
6475160-C-A 6607119-C-A **
10998886-GCATTC-G **
3626856-G-T 3758815-G-T **
10998885-T-C **
3850031-T-G 3981990-T-G **
10998861-CCGCTT-C **
3990710-G-GT 4122669-G-GT **
4357673-G-T 4489632-G-T **
10998857-T-C **
4770620-T-G 4902579-T-G **
4899559-G-T 5031518-G-T **
5530891-G-T 5662850-G-T **
5761445-C-A 5893404-C-A **
7643131-C-A 7775090-C-A **
6356130-C-A 6488089-C-A **
5902046-G-T 6034005-G-T **
6634261-T-G 6766220-T-G **
6830786-A-C 6962745-A-C **
10988812-C-G **
7428326-A-C 7560285-A-C **
7301510-C-T 7433469-C-T **
7277502-A-T 7409461-A-T **
7257032-C-A 7388991-C-A **
7255041-C-A 7387000-C-A **
10883934-T-C **
7186698-T-G 7318657-T-G **
7166690-C-A 7298649-C-A **
10997132-T-A **
7109542-CAGAAATA-C 7241501-CAGAAATA-C **
7081119-C-A 7213078-C-A **
10998838-T-A **
7021134-C-A 7153093-C-A **
13821198-G-T 11700492-G-T ***
13453893-C-G 11298217-C-G ***
16503150-A-G 14391270-A-G ***
22461049-A-T 20299163-A-T DYZ19 ***
4687801-C-A 4819760-C-A ***
13862235-AGAATG-A 11741529-AGAATG-A ***
18959266-C-A 16847386-C-A ***
19289541-C-A 17177661-C-A ***
18580510-G-T 16468630-G-T ***
13842707-C-G 11722001-C-G ***
2798710-ATTTT-A,ATTT 2930669-ATTTT-A,ATTT 20×T***
19045687-CTTTT-C,CT 16933807-CTTTT-C,CT 17×T***
18690215-C-A 16578335-C-A ***
18263529-C-A 16151649-C-A ***
21307131-C-A 19145245-C-A ***
18242895-G-A 16131015-G-A ***
7032585-C-A 7164544-C-A ***
22600458-C-A 20438572-C-A ***
10012688-C-A 10175079-C-A ***
15653236-C-T 13541356-C-T ***
8666723-GTTTTT-G,GTTTT 8798682-GTTTTT-G,GTTTT 25×T***
14247782-G-GAA 12127076-G-GAA 10×A***
7094897-C-CAA 7226856-C-CAA 16×A***
15572591-A-G 13460711-A-G ***
15325245-C-A 13213363-C-A ***
5270693-CTTTTTTT-C 5402652-CTTTTTTT-C 22×T***
14366568-T-C 12245863-T-C ***
7536451-A-G 7668410-A-G ***
4778012-CA-C,CAAA 4909971-CA-C,CAAA 16×A***
7536426-A-G 7668385-A-G ***
17861960-CTT-C 15750080-CTT-C 14×T***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.

Age Analysis Information (work in progress)

AllMcDonaldYFull
Kit: 774112944544177767097689322
Kit: 7741121497580793836288318757
Used in age calculations1497580793836288318757
Counts of SNPs2222
Variant counts last updated 2019-12-30 02:43:37.



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