Gill

BigY2: 428397
MDKA Birth: United States > Virginia

Tree Position

R-P312/S116 > Z290 > L21/S145 > S552 > DF13 > Z39589 > A4556 > BY132302

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19) POS-REF-ALT (hg38) Blocks Names Region McDonald BED combBED STRBigY2
428397
6221719-T-G 6353678-T-G IR3_Dst A*
13687325-T-C 11531649-T-C DYZ17 A*
22265763-T-A 20103877-T-A DYZ19 A*
22282670-G-T 20120784-G-T DYZ19 A*
24295205-T-C 22149058-T-C P3_t1 A*
7838938-C-T 7970897-C-T Y37601 YY+
2881981-C-A 3013940-C-A BY57034 YY+
2889442-G-A 3021401-G-A BY57129 YY+
4958214-T-G 5090173-T-G BY58485 +
6964710-AAGTGACAG-A 7096669-AAGTGACAG-A +
7193964-A-G 7325923-A-G BY63804 YY+
8011969-C-T 8143928-C-T BY69341 YY+
8031943-C-T 8163902-C-T BY69494 YY+
8363584-G-T 8495543-G-T BY72011 YY+
8515725-G-A 8647684-G-A BY73586 YY+
9154876-A-G 9317267-A-G BY42814 Y+
14439277-G-T 12318550-G-T BY95775 Y+
14908036-T-C 12796103-T-C BY98411 YY+
15613936-G-A 13502056-G-A BY102899 YY+
16523737-C-T 14411857-C-T YY+
17307649-A-G 15195769-A-G BY211685 YY+
17320145-A-G 15208265-A-G BY113776 YY+
17820792-G-A 15708912-G-A BY117662 YY+
18996134-C-A 16884254-C-A BY125360 YY+
19142202-A-C 17030322-A-C BY126674 YY+
19217502-G-C 17105622-G-C BY127342 YY+
19771030-G-A 17659150-G-A BY211951 P5_Prx +
20363341-C-G 18201455-C-G BY212145 P5_Dst +
21138349-C-T 18976463-C-T BY130626 YY+
21260022-C-G 19098136-C-G BY131523 YY+
21551016-C-T 19389130-C-T BY43620 YY+
22459893-G-C 20298007-G-C Z17082 DYZ19 +
23258800-C-T 21096914-C-T BY144178 YY+
23322930-G-C 21161044-G-C BY144573 YY+
24372715-G-A 22226568-G-A MF5945 +
28773186-A-G 26627039-A-G BY151143 +
18434657-A-T 16322777-A-T FT381086 P6_Dst *
23551264-C-CGTGT 21389378-C-CGTGT 14×GT*
22318950-G-C 20157064-G-C DYZ19 *
21092185-C-T 18930299-C-T **
13898756-T-TTTG 11778050-T-TTTG **
21237258-C-A 19075372-C-A **
13446549-C-T 11290873-C-T **
14022166-T-C 11901460-T-C **
6177449-A-G 6309408-A-G PF6652BY45142 IR3_Dst **
21752978-C-A 19591092-C-A **
6699070-C-T 6831029-C-T **
2986100-C-A 3118059-C-A **
21617775-T-A 19455889-T-A **
10763073-C-T **
7363156-C-A 7495115-C-A **
17576262-C-A 15464382-C-A **
10997745-A-T **
21703122-C-A 19541236-C-A **
6699065-T-G 6831024-T-G **
14521628-C-A 12409829-C-A **
22904198-C-A 20742312-C-A **
10034159-C-A 10196550-C-A **
13457623-A-T 11301947-A-T **
21084562-C-A 18922676-C-A **
9765301-C-A 9927692-C-A **
5845825-G-T 5977784-G-T FT325259 **
5212149-C-A 5344108-C-A **
5443882-C-A 5575841-C-A **
22204244-C-A 20042358-C-A **
17470855-C-A 15358975-C-A **
11646217-G-A DYZ17 **
11675456-C-A DYZ17 **
17781594-C-T 15669714-C-T **
18923973-C-T 16812093-C-T **
9351143-G-T 9513534-G-T **
22526252-C-A 20364366-C-A **
3407852-C-A 3539811-C-A **
8345952-C-G 8477911-C-G **
2763754-G-A 2895713-G-A **
14588985-G-T 12477185-G-T **
25988036-A-AC 23841889-A-AC P1_Y1 **
21769994-C-A 19608108-C-A **
23435720-G-T 21273834-G-T **
17030991-GCA-G 14919111-GCA-G **
10842079-C-A **
7645196-A-C 7777155-A-C **
21240581-C-A 19078695-C-A **
19048911-C-A 16937031-C-A **
19054369-C-T 16942489-C-T **
10851854-G-A FT434132 **
9397996-C-A 9560387-C-A **
13323253-A-C 11167577-A-C **
10760016-A-G **
14735313-A-G 12623381-A-G **
11646215-A-AG DYZ17 **
14372120-C-A 12251416-C-A **
7195252-G-T 7327211-G-T **
16789682-C-A 14677802-C-A **
21752972-C-A 19591086-C-A **
10842544-C-T **
21334663-C-A 19172777-C-A **
10782639-T-C **
18465300-G-T 16353420-G-T P6_Dst **
23052623-C-A 20890737-C-A **
24634117-A-C 22487970-A-C P3_t2 **
19111423-C-A 16999543-C-A **
7142241-C-A 7274200-C-A **
14959452-C-A 12847527-C-A **
10895911-A-C **
18385131-C-A 16273251-C-A P6_Gap **
19847667-A-T 17735787-A-T P5_Prx **
11027076-C-G **
6830794-C-A 6962753-C-A **
13940946-A-G 11820240-A-G **
15495139-C-A 13383259-C-A **
14823541-C-A 12711608-C-A **
14689022-C-A 12577088-C-A **
13446531-A-T 11290855-A-T **
13446543-T-A 11290867-T-A **
11028007-C-A **
10894149-C-A **
2810401-T-C 2942360-T-C **
10997718-C-CT **
2695788-T-C 2827747-T-C **
2728221-G-T 2860180-G-T **
2741361-C-A 2873320-C-A **
2788225-G-A 2920184-G-A **
2805516-T-G 2937475-T-G **
2805522-T-A 2937481-T-A **
2805523-C-T 2937482-C-T **
2839720-G-C 2971679-G-C **
2861367-C-A 2993326-C-A **
3060450-T-C 3192409-T-C **
3327259-G-A 3459218-G-A **
3327268-G-A 3459227-G-A **
3697855-G-T 3829814-G-T FT214300 **
3723738-C-A 3855697-C-A **
3732539-A-T 3864498-A-T **
3903960-AG-A 4035919-AG-A **
4144118-T-C 4276077-T-C **
4293518-C-A 4425477-C-A **
4311501-G-T 4443460-G-T **
4389525-T-C 4521484-T-C **
4457895-C-A 4589854-C-A **
4466681-G-T 4598640-G-T **
4545177-A-C 4677136-A-C **
4769321-T-A 4901280-T-A **
4778937-C-A 4910896-C-A **
4871925-G-A 5003884-G-A **
4889477-A-G 5021436-A-G **
4936409-C-A 5068368-C-A **
4957553-C-A 5089512-C-A **
5159503-A-C 5291462-A-C **
5195685-G-T 5327644-G-T **
5236155-C-A 5368114-C-A **
5292262-T-A 5424221-T-A **
5359064-G-T 5491023-G-T **
5374013-C-A 5505972-C-A **
5446453-A-T 5578412-A-T **
5459851-G-T 5591810-G-T **
5685267-C-A 5817226-C-A **
5726229-C-A 5858188-C-A **
5799131-T-A 5931090-T-A **
5871900-A-T 6003859-A-T **
6000833-T-G 6132792-T-G **
6115361-T-C 6247320-T-C **
6177441-C-T 6309400-C-T IR3_Dst **
6221718-T-TG 6353677-T-TG IR3_Dst **
6350760-G-T 6482719-G-T **
6368383-T-C 6500342-T-C **
6699054-A-G 6831013-A-G **
6699062-C-A 6831021-C-A **
6699074-G-T 6831033-G-T **
6734771-A-T 6866730-A-T **
6744475-C-A 6876434-C-A **
6768917-C-T 6900876-C-T **
6775448-A-C 6907407-A-C **
6778979-C-A 6910938-C-A **
6814658-C-A 6946617-C-A **
6915425-C-A 7047384-C-A **
6979705-T-A 7111664-T-A **
6979713-T-A 7111672-T-A **
7019054-A-AT 7151013-A-AT 8×T**
7107495-C-A 7239454-C-A **
7107701-T-C 7239660-T-C **
7110451-A-T 7242410-A-T **
7143472-G-A 7275431-G-A **
7269928-T-A 7401887-T-A **
7283226-C-A 7415185-C-A **
7299200-G-A 7431159-G-A **
7363158-A-T 7495117-A-T **
7385332-T-C 7517291-T-C **
7414304-A-G 7546263-A-G **
7671030-C-A 7802989-C-A **
7824703-C-G 7956662-C-G **
7824723-T-C 7956682-T-C **
7824730-A-T 7956689-A-T **
7853252-G-C 7985211-G-C **
8013391-C-A 8145350-C-A **
8016067-C-A 8148026-C-A **
8045451-T-G 8177410-T-G **
8119394-A-G 8251353-A-G **
8167879-C-T 8299838-C-T **
8172984-C-A 8304943-C-A **
8321473-A-T 8453432-A-T **
8386213-C-G 8518172-C-G **
8481874-G-T 8613833-G-T F17109 **
8728269-T-A 8860228-T-A **
8753729-A-C 8885688-A-C **
8832981-G-A 8964940-G-A **
8843480-A-C 8975439-A-C **
8843485-G-T 8975444-G-T **
8855407-C-A 8987366-C-A **
8867034-G-T 8998993-G-T **
9127339-G-C **
9013039-G-A 9175430-G-A **
9381093-C-T 9543484-C-T **
9416958-G-C 9579349-G-C **
9424336-C-A 9586727-C-A **
9465878-C-A 9628269-C-A **
9471606-TTTA-T 9633997-TTTA-T **
9482683-T-A 9645074-T-A 10×A**
9503965-C-T 9666356-C-T **
9745898-G-T 9908289-G-T **
9820606-C-T 9982997-C-T **
9865557-C-A 10027948-C-A **
9945459-G-T 10107850-G-T **
9945782-A-G 10108173-A-G **
10013864-G-A 10176255-G-A **
10093045-C-G 10255436-C-G **
10655208-C-A **
10660408-C-A **
10662864-TCCATTACA-T **
10666906-T-G **
10668402-T-A **
10668982-C-T **
10671371-A-G **
10677328-T-A **
10692505-T-C **
10750258-C-A **
10750871-C-A **
10755973-T-A **
10756186-C-T **
10763074-T-TCCACC **
10763089-T-G **
10768146-T-G **
10769658-T-A **
10773647-A-T **
10779281-C-G **
10779659-T-C **
10780939-C-A **
10781216-A-T **
10781360-A-T **
10782582-T-C **
10782593-A-C **
10782597-T-C **
10786440-G-GCATTC **
10795970-A-T **
10816665-T-C **
10816679-A-T **
10818705-C-A **
10827655-C-G **
10828955-T-C **
10889457-C-G **
10894151-C-A **
10895845-C-T **
10895869-T-G **
10895873-T-TTGCAC **
10895890-G-GCACTC **
10895920-C-T **
10895928-A-T **
10913550-G-T **
10935079-A-G **
10938123-T-C **
10938708-C-A **
10948226-CA-C **
10950846-C-T **
10972149-C-A **
10997195-C-T **
10997747-T-TCCGAA **
10999878-C-T **
11010354-C-T FT285504 **
11019027-C-A **
11022120-C-CGGTTT **
11022127-A-T **
11028011-A-T **
11028012-C-G **
11028015-C-T **
11030622-A-C **
11032948-T-A **
13216649-A-T 11060973-A-T **
13217047-C-T 11061371-C-T **
13316117-C-A 11160441-C-A **
13323254-G-A 11167578-G-A **
13323259-G-A 11167583-G-A **
13323270-G-A 11167594-G-A **
13323274-T-C 11167598-T-C **
13463790-G-T 11308114-G-T **
13468223-A-G 11312547-A-G **
13527605-C-A 11371929-C-A **
13555537-C-A 11399861-C-A **
13575595-C-A 11419919-C-A **
13602669-G-A 11446993-G-A **
11644072-G-A DYZ17 **
11646211-T-TAGTGTGGAC DYZ17 **
11646249-A-T DYZ17 **
11646250-A-G DYZ17 **
11646256-T-TGTAGA DYZ17 **
11672195-C-T DYZ17 **
13858923-T-C 11738217-T-C DYZ17 **
13871355-C-A 11750649-C-A **
13922231-A-G 11801525-A-G **
13938830-T-C 11818124-T-C **
13958440-T-G 11837734-T-G **
13984388-C-A 11863682-C-A **
14071433-C-A 11950727-C-A **
14080396-T-G 11959690-T-G **
14109335-A-T 11988629-A-T **
14109338-C-G 11988632-C-G **
14158959-C-A 12038253-C-A **
14171862-G-T 12051156-G-T **
14183482-TG-T 12062776-TG-T **
14224539-C-A 12103833-C-A **
14261727-G-A 12141021-G-A **
14296779-G-A 12176073-G-A **
14328062-C-A 12207356-C-A **
14369722-G-T 12249018-G-T **
14379814-C-A 12259110-C-A **
14420168-C-A 12299443-C-A **
14424860-A-C 12304135-A-C **
14452287-C-T 12331560-C-T **
14459457-A-G 12338730-A-G **
14525191-C-T 12413392-C-T FT30316 **
14613412-C-A 12501610-C-A **
14667735-A-G 12555800-A-G **
14674439-C-T 12562505-C-T **
14714952-G-T 12603019-G-T **
14714964-G-T 12603031-G-T **
14900682-C-T 12788749-C-T **
14901351-G-T 12789418-G-T **
14995316-T-C 12883401-T-C **
15049745-C-A 12937836-C-A **
15057339-C-A 12945431-C-A **
15064843-CT-C 12952935-CT-C **
15084746-A-C 12972836-A-C **
15126848-C-A 13014935-C-A **
13045947-C-CAAA 20×A**
15163035-C-A 13051121-C-A **
15172540-G-T 13060626-G-T **
15182950-G-T 13071036-G-T **
15183852-C-A 13071938-C-A **
15190038-G-T 13078124-G-T **
15238870-A-C 13126956-A-C **
15250725-C-A 13138811-C-A **
15312435-G-A 13200540-G-A **
15318072-C-A 13206178-C-A **
15365276-C-A 13253396-C-A **
15369221-G-C 13257341-G-C **
15411392-C-A 13299512-C-A **
15418575-C-A 13306695-C-A **
15420288-C-A 13308408-C-A **
15421350-G-A 13309470-G-A **
15423107-C-A 13311227-C-A **
15430370-T-A 13318490-T-A **
15495430-T-A 13383550-T-A **
15496397-G-A 13384517-G-A **
15580379-C-A 13468499-C-A **
15612230-A-G 13500350-A-G **
15612233-C-T 13500353-C-T **
15677295-A-G 13565415-A-G **
15677331-C-G 13565451-C-G **
15732958-G-C 13621078-G-C **
15733854-T-C 13621974-T-C **
15743681-A-G 13631801-A-G **
15775906-A-G 13664026-A-G **
15848959-ATT-A 13737079-ATT-A **
15917550-A-G 13805670-A-G **
15950422-A-G 13838542-A-G FTB45608 **
15968245-C-A 13856365-C-A **
15997506-A-C 13885626-A-C **
16007976-C-A 13896096-C-A **
16056802-C-A 13944922-C-A **
16216703-A-G 14104823-A-G **
16226229-CA-C 14114349-CA-C **
16308238-C-A 14196358-C-A **
16358788-C-A 14246908-C-A **
16442504-C-A 14330624-C-A **
16484147-C-A 14372267-C-A **
16525010-A-G 14413130-A-G **
16526581-A-C 14414701-A-C **
16576924-A-C 14465044-A-C **
16577507-C-A 14465627-C-A BY154155 **
16704643-G-A 14592763-G-A **
16730025-T-A 14618145-T-A **
16730031-T-C 14618151-T-C **
16853819-C-A 14741939-C-A **
16922585-G-GT 14810705-G-GT 8×T**
16952494-C-G 14840614-C-G **
17013314-C-A 14901434-C-A **
17019748-T-A 14907868-T-A **
17028954-A-G 14917074-A-G **
17099010-T-C 14987130-T-C **
17297049-G-C 15185169-G-C **
17302218-T-C 15190338-T-C **
17347560-A-C 15235680-A-C **
17385640-C-A 15273760-C-A **
17407882-C-A 15296002-C-A **
17462222-C-A 15350342-C-A **
17503571-T-A 15391691-T-A **
17505586-C-A 15393706-C-A FT37264 **
17576266-G-A 15464386-G-A **
17596712-GTTAATTTTTCTTCACTGTTTTTGGC-G 15484832-GTTAATTTTTCTTCACTGTTTTTGGC-G **
17695689-T-C 15583809-T-C **
17702593-G-C 15590713-G-C **
17918816-C-A 15806936-C-A **
17943169-A-G 15831289-A-G **
18021293-A-G 15909413-A-G **
18059819-A-C 15947939-A-C **
18071419-A-G 15959539-A-G **
18115543-A-G 16003663-A-G **
18190757-G-T 16078877-G-T **
18190767-C-A 16078887-C-A **
18390211-C-A 16278331-C-A P6_Gap **
18400519-A-G 16288639-A-G P6_Gap **
18547235-T-G 16435355-T-G **
18639569-C-A 16527689-C-A **
18694732-C-A 16582852-C-A **
18723909-G-T 16612029-G-T **
18778941-C-A 16667061-C-A **
18779413-C-A 16667533-C-A **
18801925-A-G 16690045-A-G **
18853926-C-T 16742046-C-T **
18853933-C-T 16742053-C-T **
18853936-G-T 16742056-G-T **
18856365-C-A 16744485-C-A BY124338 **
18857659-G-T 16745779-G-T **
18905531-C-A 16793651-C-A **
18933333-T-C 16821453-T-C FT181571 **
18951203-A-C 16839323-A-C **
18997523-A-T 16885643-A-T **
19036740-TTTTA-T 16924860-TTTTA-T **
19040740-A-C 16928860-A-C **
19062531-C-A 16950651-C-A **
19095134-C-A 16983254-C-A **
19249700-G-T 17137820-G-T **
19346504-T-G 17234624-T-G **
19346554-C-A 17234674-C-A **
19409875-T-C 17297995-T-C **
19409892-T-C 17298012-T-C **
19413279-A-C 17301399-A-C **
19502249-T-A 17390369-T-A **
19529270-C-T 17417390-C-T **
19538421-G-A 17426541-G-A **
19733163-T-C 17621283-T-C P5_Prx **
19849476-C-G 17737596-C-G P5_Prx **
19856065-G-C 17744185-G-C P5_Prx **
19856082-T-C 17744202-T-C P5_Prx **
19856147-T-G 17744267-T-G P5_Prx **
19873658-C-A 17761778-C-A P5_Prx **
19966495-T-G 17854615-T-G P5_Prx **
20028051-A-T 17916171-A-T P5_Prx **
20501872-G-A 18339986-G-A P5_Dst **
20501979-C-T 18340093-C-T P5_Dst **
20560582-G-T 18398696-G-T P5_Dst **
20570352-T-G 18408466-T-G P5_Dst **
20603980-G-T 18442094-G-T P5_Dst **
20637662-C-T 18475776-C-T P4_Prx **
20637702-T-C 18475816-T-C P4_Prx **
20685222-C-A 18523336-C-A P4_Prx **
20839532-C-T 18677646-C-T P4_Gap **
20961621-A-C 18799735-A-C P4_Dst **
21012249-A-G 18850363-A-G P4_Dst **
21012258-T-A 18850372-T-A P4_Dst **
21037515-A-G 18875629-A-G **
21072233-C-T 18910347-C-T **
21152843-T-A 18990957-T-A **
21167333-C-T 19005447-C-T **
21201053-G-C 19039167-G-C **
21295980-C-A 19134094-C-A **
21467732-A-T 19305846-A-T **
21496665-T-C 19334779-T-C **
21505687-T-C 19343801-T-C **
21528343-G-T 19366457-G-T **
21566656-C-A 19404770-C-A **
21602907-C-T 19441021-C-T **
21703119-C-A 19541233-C-A **
21799175-G-A 19637289-G-A **
21832094-C-T 19670208-C-T **
21862938-C-A 19701052-C-A **
21927303-G-A 19765417-G-A **
21927306-C-A 19765420-C-A **
21954412-C-A 19792526-C-A **
21961445-C-A 19799559-C-A **
21980001-C-T 19818115-C-T 27×A**
21986984-TA-T 19825098-TA-T **
22056942-G-T 19895056-G-T **
22111413-A-G 19949527-A-G **
22125750-C-A 19963864-C-A **
22155629-C-G 19993743-C-G **
22164517-C-A 20002631-C-A **
22185543-G-A 20023657-G-A **
22263873-C-A 20101987-C-A BY214787 DYZ19 **
22441024-T-A 20279138-T-A DYZ19 **
22629927-A-T 20468041-A-T **
22755389-T-A 20593503-T-A **
22755390-C-A 20593504-C-A **
22768196-G-A 20606310-G-A **
22787797-C-A 20625911-C-A FT366265 **
22865285-C-A 20703399-C-A **
22903657-C-A 20741771-C-A **
22914701-A-T 20752815-A-T **
22938910-C-G 20777024-C-G **
22944677-C-A 20782791-C-A **
23009439-C-A 20847553-C-A **
23045903-G-T 20884017-G-T **
23066160-G-A 20904274-G-A **
23143095-C-A 20981209-C-A **
23380436-C-A 21218550-C-A **
23435714-C-T 21273828-C-T **
23529722-C-A 21367836-C-A **
24003122-A-G 21856975-A-G **
24023652-AC-A 21877505-AC-A **
24490465-T-C 22344318-T-C **
24888376-G-C 22742229-G-C g1 **
25988014-T-C 23841867-T-C P1_Y1 **
26122055-C-G 23975908-C-G P1_Y1 **
26133153-G-T 23987006-G-T P1_Y1 **
26170612-C-A 24024465-C-A P1_Y1 **
26344203-C-A 24198056-C-A P1_Y1 **
27543361-C-A 25397214-C-A P1_Y2 **
27782716-C-T 25636569-C-T P1_Y2 **
27859455-A-AT 25713308-A-AT P1_Y2 **
28019331-A-G 25873184-A-G P1_Y2 **
28085849-C-A 25939702-C-A P1_Y2 **
28085959-C-G 25939812-C-G P1_Y2 **
28483799-C-A 26337652-C-A **
28519570-C-A 26373423-C-A **
28521578-C-A 26375431-C-A FT103389 **
28583656-G-C 26437509-G-C **
28622621-A-T 26476474-A-T **
28622782-C-A 26476635-C-A **
56840461-G-T **
56841528-TG-T **
56841771-T-G **
56871506-C-A **
56879562-G-C **
36700-A-T **
20816924-CAAAAAAAAAA-C 18655038-CAAAAAAAAAA-C P4_Gap 22×A***
13323564-C-A 11167888-C-A F14376 ***
22948182-C-A 20786296-C-A ***
27918264-A-C 25772117-A-C FGC11017 P1_Y2 ***
9127538-A-C 9289929-A-C ***
22200355-CAAA-C 20038469-CAAA-C 13×A***
3758911-C-A 3890870-C-A ***
7532320-AT-A 7664279-AT-A ***
5393341-C-A 5525300-C-A ***
28701702-C-A 26555555-C-A ***
14526870-C-A 12415071-C-A ***
24430245-C-A 22284098-C-A ***
19048913-G-A 16937033-G-A ***
22578194-C-A 20416308-C-A ***
18865944-C-A 16754064-C-A ***
7363663-C-A 7495622-C-A ***
3161081-C-A 3293040-C-A ***
3500927-C-A 3632886-C-A ***
3696106-T-C 3828065-T-C ***
4270910-C-A 4402869-C-A ***
5968143-C-A 6100102-C-A ***
6523641-A-T 6655600-A-T ***
6773770-G-A 6905729-G-A ***
6815499-C-A 6947458-C-A ***
6905509-C-A 7037468-C-A PH294 ***
6979544-C-CT,CTT 7111503-C-CT,CTT 9×T***
7115881-T-C 7247840-T-C ***
7167480-T-C 7299439-T-C ***
7217179-G-A 7349138-G-A ***
7254634-A-G 7386593-A-G ***
7352057-C-A 7484016-C-A ***
7361431-C-A 7493390-C-A ***
7436117-T-C 7568076-T-C ***
7775601-T-A 7907560-T-A ***
7958489-C-T 8090448-C-T ***
8130453-G-T 8262412-G-T ***
8675091-C-A 8807050-C-A ***
8764228-A-AT 8896187-A-AT ***
9426366-C-A 9588757-C-A ***
9849693-G-T 10012084-G-T ***
9892181-C-A 10054572-C-A ***
10024245-T-C 10186636-T-C ***
10662782-C-T ***
10959747-C-A FTA49227 ***
11018459-C-A FT439936 ***
11019168-C-A ***
13447162-C-A 11291486-C-A ***
13463766-A-AG 11308090-A-AG ***
13643582-T-C 11487906-T-C ***
14221912-TA-T 12101206-TA-T ***
14766716-T-C 12654785-T-C ***
14767018-CTTT-C,CTT 12655087-CTTT-C,CTT 14×T***
14780800-C-A 12668870-C-A ***
14871000-AT-A 12759070-AT-A ***
14984185-C-A 12872253-C-A ***
15418611-C-A 13306731-C-A ***
15476833-C-A 13364953-C-A ***
15480374-C-G 13368494-C-G ***
15698175-C-A 13586295-C-A ***
15954385-C-A 13842505-C-A ***
16095111-A-G 13983231-A-G ***
16282396-CT-C 14170516-CT-C ***
16407675-A-T 14295795-A-T ***
16506522-C-A 14394642-C-A ***
16744995-G-A 14633115-G-A ***
16880797-C-A 14768917-C-A ***
17029371-C-A 14917491-C-A ***
17256854-CTTT-C,CTTTT 15144974-CTTT-C,CTTTT 14×T***
17313974-C-A 15202094-C-A ***
17375551-A-G 15263671-A-G ***
17459686-C-A 15347806-C-A ***
17601382-A-G 15489502-A-G ***
17749451-C-A 15637571-C-A ***
18053320-AT-A 15941440-AT-A ***
18249549-C-A 16137669-C-A ***
18718214-AC-A 16606334-AC-A ***
18726620-C-A 16614740-C-A ***
18897010-T-C 16785130-T-C ***
18898348-G-A 16786468-G-A ***
19345436-A-G 17233556-A-G ***
19518276-TA-T,TAAA 17406396-TA-T,TAAA 16×A***
21230014-G-A 19068128-G-A ***
21464961-C-A 19303075-C-A ***
21555220-T-C 19393334-T-C ***
21561571-A-T 19399685-A-T ***
21731235-C-T 19569349-C-T ***
22190567-C-A 20028681-C-A ***
22190766-C-A 20028880-C-A ***
22200469-C-A 20038583-C-A ***
22845154-A-G 20683268-A-G ***
23088689-C-A 20926803-C-A ***
23549798-C-A 21387912-C-A ***
23822944-CAATAATAAATA-C 21661058-CAATAATAAATA-C ***
24475063-G-T 22328916-G-T ***
24475148-GT-G 22329001-GT-G ***
24511154-T-C 22365007-T-C ***
27937502-A-G 25791355-A-G P1_Y2 ***
28031649-G-T 25885502-G-T P1_Y2 ***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.