Tree Position

R-P312/S116 > Z290 > L21/S145 > DF13 > DF21/S192 > FGC3213 > Z16532 > Y34485 > BY57019

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19) POS-REF-ALT (hg38) Blocks Names Region McDonald BED combBED STRBigY2
124492
20028395-T-C 17916515-T-C P5_Prx A*
13451292-C-T 11295616-C-T A*
20765200-T-C 18603314-T-C P4_Prx A*
17094913-AT-A 14983033-AT-A 10×T+
18111348-A-G 15999468-A-G BY120135 YY+
2801870-G-T 2933829-G-T BY56507 YY+
2801860-T-G 2933819-T-G BY56506 YY+
27889296-AAT-A 25743149-AAT-A P1_Y2 **
14493398-T-C 12381595-T-C **
14499568-C-G 12387773-C-G **
14499575-G-T 12387780-G-T **
14514954-T-G 12403159-T-G **
14517293-C-A 12405494-C-A **
14563038-A-C 12451238-A-C **
14525712-C-T 12413913-C-T **
14531269-C-A 12419470-C-A **
14567647-ACT-A 12455847-ACT-A **
14570077-A-C 12458277-A-C **
14605399-C-A 12493601-C-A **
14715311-G-T 12603378-G-T **
14765165-C-A 12653234-C-A **
14493374-T-G 12381571-T-G **
14485546-G-T 12364815-G-T **
12377823-G-T **
14036224-C-A 11915518-C-A **
13860879-G-T 11740173-G-T **
13892010-C-T 11771304-C-T **
13893274-G-T 11772568-G-T **
13896173-C-A 11775467-C-A **
13899170-A-C 11778464-A-C **
13900882-G-T 11780176-G-T **
14020123-A-C 11899417-A-C **
14121730-C-A 12001024-C-A **
15080721-A-T 12968811-A-T **
14121738-C-A 12001032-C-A **
14181187-T-A 12060481-T-A **
14246925-C-A 12126219-C-A **
14280829-G-A 12160123-G-A **
14361559-A-C 12240854-A-C **
14446711-C-A 12325984-C-A **
14447343-C-A 12326616-C-A **
14911968-C-A 12800035-C-A **
15423368-G-T 13311488-G-T **
15137931-C-A 13026018-C-A **
17374775-G-T 15262895-G-T **
16868746-CATATATATATATATATATATATATATATATATAT-C 14756866-CATATATATATATATATATATATATATATATATAT-C 22×AT**
16881679-A-T 14769799-A-T **
16881696-C-A 14769816-C-A **
16931567-G-T 14819687-G-T **
16931764-A-G 14819884-A-G **
16952649-C-A 14840769-C-A **
17382117-T-G 15270237-T-G **
16540234-G-T 14428354-G-T **
17426384-A-G 15314504-A-G **
17504775-A-T 15392895-A-T **
17511954-T-A 15400074-T-A **
17622613-C-A 15510733-C-A **
17798784-G-T 15686904-G-T **
17849656-A-T 15737776-A-T **
17884591-A-T 15772711-A-T **
16673192-T-A 14561312-T-A **
16437472-A-G 14325592-A-G **
15394710-C-A 13282830-C-A **
15808951-A-T 13697071-A-T **
15498077-T-G 13386197-T-G **
15600068-A-C 13488188-A-C **
15612215-C-CATAT 13500335-C-CATAT **
15641680-A-T 13529800-A-T **
15685155-C-A 13573275-C-A **
15792834-C-A 13680954-C-A **
15926956-C-A 13815076-C-A **
16428705-C-A 14316825-C-A **
16005380-C-A 13893500-C-A **
16009897-C-A 13898017-C-A **
16033722-T-G 13921842-T-G **
16054104-A-C 13942224-A-C **
16150052-C-A 14038172-C-A P8_Dst **
16364100-AT-A 14252220-AT-A **
16425501-G-T 14313621-G-T **
13854851-T-G 11734145-T-G **
11677331-CG-C **
11674954-A-T **
10992885-T-A **
10991665-C-G **
10991694-A-G **
10991702-G-C **
10991707-T-C **
10991708-TCAATG-T **
10991721-T-A **
10991723-T-A **
10995645-C-T **
10952267-T-G **
10997199-CT-C **
11003309-C-A **
11009211-C-A **
11011448-C-A **
11013723-C-A **
11014889-T-C **
11018264-A-ATTCCT **
10991664-C-T **
10950530-T-G **
11018826-C-A **
10894557-C-CTTCCATTCCCTTCCATTCCA **
10851889-G-T **
10858197-G-A **
10866087-A-ATTCC **
10869030-CTCCAT-C **
10874317-G-T **
10880669-A-C **
10886139-T-G **
10895971-C-A **
10945854-A-G **
10906480-G-T **
10933139-G-A **
10937691-A-ACT **
10938566-C-G **
10941387-C-A **
10944662-T-A **
10945011-C-A **
11018271-T-A **
11018960-T-A **
11643346-A-G **
13513448-C-A 11357772-C-A **
13460372-C-G 11304696-C-G **
13460380-T-A 11304704-T-A **
13466065-T-G 11310389-T-G **
13466319-A-T 11310643-A-T **
13466336-G-C 11310660-G-C **
13466338-A-C 11310662-A-C **
13506901-C-A 11351225-C-A **
13522750-C-A 11367074-C-A **
13460339-C-T 11304663-C-T **
13525386-G-T 11369710-G-T **
13560608-G-T 11404932-G-T **
13573126-C-A 11417450-C-A **
13596307-C-A 11440631-C-A **
13734345-T-G 11578669-T-G **
13734592-A-T 11578916-A-T **
13734614-T-C 11578938-T-C **
13460363-A-T 11304687-A-T **
13460338-T-G 11304662-T-G **
11019031-C-A **
13263273-C-A 11107597-C-A **
11030013-C-A **
11032685-A-T **
13214249-C-A 11058573-C-A **
13223586-G-T 11067910-G-T **
13242868-T-C 11087192-T-C **
13256004-A-T 11100328-A-T **
13256007-T-G 11100331-T-G **
13280764-C-A 11125088-C-A **
13460310-T-A 11304634-T-A **
13305477-A-C 11149801-A-C **
13339816-T-C 11184140-T-C **
13339819-G-A 11184143-G-A **
13339832-T-A 11184156-T-A **
13339855-A-G 11184179-A-G **
13339858-C-A 11184182-C-A **
13433732-C-A 11278056-C-A **
18085399-T-G 15973519-T-G **
18152008-G-C 16040128-G-C **
18121819-C-A 16009939-C-A **
24177700-T-G 22031553-T-G P3_b1 **
23713728-T-A 21551842-T-A **
23713732-A-T 21551846-A-T **
23713742-T-G 21551856-T-G **
23807528-C-A 21645642-C-A **
23887896-T-A 21726010-T-A **
23952949-T-G 21806802-T-G **
24293468-A-T 22147321-A-T P3_t1 **
23713712-G-T 21551826-G-T **
24384962-T-C 22238815-T-C **
24466353-C-A 22320206-C-A **
25246331-T-G 23100184-T-G P2_r1 **
25246358-T-G 23100211-T-G P2_r1 **
25617181-GT-G 23471034-GT-G P1_gr1 **
26185524-G-T 24039377-G-T P1_Y1 **
26185538-G-T 24039391-G-T P1_Y1 **
23713713-C-A 21551827-C-A **
23713707-C-A 21551821-C-A **
26198016-G-T 24051869-G-T P1_Y1 **
22876574-T-C 20714688-T-C **
21954633-A-T 19792747-A-T **
21954656-C-A 19792770-C-A **
21964447-C-A 19802561-C-A **
22078130-T-G 19916244-T-G **
22080827-A-C 19918941-A-C **
22214893-T-G 20053007-T-G **
22803994-A-ATT 20642108-A-ATT 10×T**
22876621-C-A 20714735-C-A **
23465768-G-T 21303882-G-T **
22880552-A-T 20718666-A-T **
22990525-C-A 20828639-C-A **
23066313-C-A 20904427-C-A **
23087398-T-C 20925512-T-C **
23100509-C-A 20938623-C-A **
23185315-C-A 21023429-C-A **
23372676-A-G 21210790-A-G **
26185546-A-T 24039399-A-T P1_Y1 **
26198030-A-T 24051883-A-T P1_Y1 **
21920568-G-A 19758682-G-A **
28728577-T-G 26582430-T-G **
28008413-A-T 25862266-A-T P1_Y2 **
28008417-G-T 25862270-G-T P1_Y2 **
28234481-T-A 26088334-T-A P1_b4 **
28480187-T-A 26334040-T-A **
28591882-C-A 26445735-C-A **
28705025-G-T 26558878-G-T **
28734950-C-A 26588803-C-A **
28008406-G-T 25862259-G-T P1_Y2 **
28812193-T-A 26666046-T-A **
28812197-G-C 26666050-G-C **
28812202-T-A 26666055-T-A **
28812247-G-C 26666100-G-C **
28815175-A-C 26669028-A-C **
56844959-G-A **
56871006-G-C **
28008408-A-T 25862261-A-T P1_Y2 **
28008395-A-T 25862248-A-T P1_Y2 **
26198033-G-T 24051886-G-T P1_Y1 **
26397684-A-T 24251537-A-T P1_Y1 **
26198038-A-T 24051891-A-T P1_Y1 **
26198042-G-T 24051895-G-T P1_Y1 **
26397588-C-A 24251441-C-A P1_Y1 9×T**
26397616-A-T 24251469-A-T P1_Y1 **
26397657-G-T 24251510-G-T P1_Y1 **
26397662-A-T 24251515-A-T P1_Y1 **
26397680-A-T 24251533-A-T P1_Y1 **
26409807-C-A 24263660-C-A P1_Y1 **
27861904-AAAAC-A 25715757-AAAAC-A P1_Y2 **
26495690-G-T 24349543-G-T P1_Y1 **
27330462-A-T 25184315-A-T P1_g3 **
27330482-A-T 25184335-A-T P1_g3 **
27330502-T-A 25184355-T-A P1_g3 **
27330505-T-A 25184358-T-A P1_g3 **
27330507-G-T 25184360-G-T P1_g3 **
27603683-C-A 25457536-C-A P1_Y2 **
21922080-CAAAAAAAAA-C 19760194-CAAAAAAAAA-C 23×A**
21856516-C-A 19694630-C-A **
18121824-T-G 16009944-T-G **
19881922-C-A 17770042-C-A P5_Prx **
19739795-A-C 17627915-A-C P5_Prx **
19747881-T-TTCTG 17636001-T-TTCTG P5_Prx **
19827370-C-A 17715490-C-A P5_Prx **
19860845-C-A 17748965-C-A P5_Prx **
19866863-T-G 17754983-T-G P5_Prx **
19881913-G-T 17770033-G-T P5_Prx **
19881930-A-T 17770050-A-T P5_Prx **
19417499-C-A 17305619-C-A **
19881933-G-T 17770053-G-T P5_Prx **
19881934-A-T 17770054-A-T P5_Prx **
19881953-G-T 17770073-G-T P5_Prx **
19881956-A-T 17770076-A-T P5_Prx **
19881971-A-T 17770091-A-T P5_Prx **
20077121-G-T 17965241-G-T P5_Dst **
20077138-A-T 17965258-A-T P5_Dst **
19476519-C-A 17364639-C-A **
19312493-C-A 17200613-C-A **
20077157-C-A 17965277-C-A P5_Dst **
18320810-G-T 16208930-G-T P6_Prx **
10851878-C-T **
18153673-C-A 16041793-C-A **
18320753-G-T 16208873-G-T P6_Prx **
18320760-C-A 16208880-C-A P6_Prx **
18320773-G-T 16208893-G-T P6_Prx **
18320779-T-A 16208899-T-A P6_Prx **
18320807-G-T 16208927-G-T P6_Prx **
18361337-G-T 16249457-G-T P6_Prx **
19312470-T-G 17200590-T-G **
18382014-T-A 16270134-T-A P6_Gap **
18465495-AGC-A 16353615-AGC-A P6_Dst **
18767378-T-C 16655498-T-C FT10331 **
19053310-C-A 16941430-C-A **
19075209-G-T 16963329-G-T **
19187435-TGAG-T 17075555-TGAG-T **
19253167-C-T 17141287-C-T **
20077156-A-T 17965276-A-T P5_Dst **
20077162-G-T 17965282-G-T P5_Dst **
21853672-C-A 19691786-C-A **
21368447-A-G 19206561-A-G **
21023306-A-T 18861420-A-T P4_Dst **
21023310-C-A 18861424-C-A P4_Dst **
21123553-C-A 18961667-C-A **
21154958-A-C 18993072-A-C **
21315089-C-A 19153203-C-A **
21352305-C-T 19190419-C-T **
21387186-C-A 19225300-C-A **
21023299-A-T 18861413-A-T P4_Dst **
21409502-C-T 19247616-C-T **
21410048-T-A 19248162-T-A **
21435234-C-A 19273348-C-A **
21477038-A-T 19315152-A-T **
21477057-C-A 19315171-C-A **
21477136-T-G 19315250-T-G **
21672100-T-C 19510214-T-C **
21023303-A-T 18861417-A-T P4_Dst **
21023248-TG-T 18861362-TG-T P4_Dst **
20221515-G-T 18059629-G-T P5_Dst **
20645378-G-T 18483492-G-T P4_Prx **
20340135-C-AAT 18178249-C-AAT P5_Dst 26×T**
20454679-C-A 18292793-C-A P5_Dst **
20637661-T-A 18475775-T-A P4_Prx **
20645346-A-T 18483460-A-T P4_Prx **
20645351-A-T 18483465-A-T P4_Prx **
20645355-A-T 18483469-A-T P4_Prx **
20645360-A-T 18483474-A-T P4_Prx **
20645384-A-T 18483498-A-T P4_Prx **
20998382-A-T 18836496-A-T P4_Dst **
20664400-A-T 18502514-A-T P4_Prx **
20664413-A-C 18502527-A-C P4_Prx **
20664415-A-T 18502529-A-T P4_Prx **
20677940-T-TG 18516054-T-TG P4_Prx **
20700652-ACACACACAAAACTTACACACACAAC-A 18538766-ACACACACAAAACTTACACACACAAC-A P4_Prx **
20757432-T-G 18595546-T-G P4_Prx **
20840588-C-A 18678702-C-A P4_Gap **
10851882-C-T **
10866063-AT-A **
10851819-A-T **
10941446-C-A **
14077066-C-A 11956360-C-A **
14986212-C-A 12874280-C-A **
28812214-G-T 26666067-G-T **
10754001-G-T **
10778551-T-G **
17135897-C-A 15024017-C-A **
10889872-ATCCAT-A **
10841024-T-G **
10851875-C-A **
5409823-C-A 5541782-C-A **
6133201-T-A 6265160-T-A **
7299120-C-A 7431079-C-A **
11005407-C-A **
6755919-C-A 6887878-C-A **
13643969-C-A 11488293-C-A **
5999363-C-CAA 6131322-C-CAA 20×A**
3550569-CA-C 3682528-CA-C **
10937689-C-T **
11028265-C-A **
9401196-C-A 9563587-C-A **
7896612-C-A 8028571-C-A **
3755655-G-T 3887614-G-T **
16464618-CT-C 14352738-CT-C 8×T**
13643346-C-A 11487670-C-A **
28658444-C-A 26512297-C-A **
7384753-C-A 7516712-C-A **
3830810-C-A 3962769-C-A **
10768972-C-A **
13969656-G-T 11848950-G-T **
10034011-C-A 10196402-C-A **
11646225-A-G **
14225559-C-A 12104853-C-A **
10800975-C-T **
4094224-C-A 4226183-C-A **
21154656-C-A 18992770-C-A **
23373026-C-A 21211140-C-A **
16701826-G-T 14589946-G-T **
3343928-A-T 3475887-A-T **
2789652-T-A 2921611-T-A **
3069171-G-T 3201130-G-T **
3117916-G-C 3249875-G-C **
3178990-T-G 3310949-T-G **
3248606-A-G 3380565-A-G **
3268158-C-A 3400117-C-A **
3404566-G-T 3536525-G-T **
2784439-T-G 2916398-T-G **
10848302-T-C **
3516886-G-T 3648845-G-T **
3516893-G-T 3648852-G-T **
3533023-C-A 3664982-C-A **
3565010-AT-A 3696969-AT-A **
3591090-T-A 3723049-T-A **
3605908-C-A 3737867-C-A **
2784446-T-G 2916405-T-G **
2784425-A-C 2916384-A-C **
16430976-C-A 14319096-C-A **
7248064-C-A 7380023-C-A **
10987968-C-A **
24432854-AG-T 22286707-AG-T **
21112028-C-A 18950142-C-A **
10926221-C-G **
10804668-C-A **
13330938-C-A 11175262-C-A **
10866073-A-T **
17548158-C-A 15436278-C-A **
2719060-A-ATTT 2851019-A-ATTT **
20084490-C-A 17972610-C-A P5_Dst **
19066075-C-A 16954195-C-A **
5393498-G-A 5525457-G-A **
10851887-G-T **
10866082-C-T **
28818495-C-G 26672348-C-G **
2708421-A-C 2840380-A-C **
10769002-C-T **
19130773-C-G 17018893-C-G **
3731989-C-A 3863948-C-A **
11018287-C-G **
11037166-C-CCCACTTCAAT **
10755477-C-A **
10994284-C-T FGC83219 **
13642993-C-A 11487317-C-A **
15918532-C-A 13806652-C-A **
10776067-C-A **
10804820-C-T **
25246347-T-G 23100200-T-G P2_r1 **
10755296-T-A **
10866097-C-T **
28633643-C-A 26487496-C-A **
10821854-T-C **
28700499-C-A 26554352-C-A **
19600614-G-T 17488734-G-T P5_Prx **
19600620-A-T 17488740-A-T P5_Prx **
21132669-C-A 18970783-C-A **
14008778-G-C 11888072-G-C 25×A**
21023284-G-T 18861398-G-T P4_Dst **
14073187-CT-C 11952481-CT-C 27×T**
13466302-T-C 11310626-T-C **
15084486-G-T 12972576-G-T **
3625652-C-T 3757611-C-T **
5210031-C-A 5341990-C-A Z2523 **
58969575-G-T 56823428-G-T **
59030506-A-C 56884359-A-C **
17994782-G-T 15882902-G-T P7_Prx **
5421163-C-A 5553122-C-A **
4779584-CTT-C 4911543-CTT-C 12×T**
8811258-G-T 8943217-G-T **
25246421-T-A 23100274-T-A P2_r1 **
4872525-C-A 5004484-C-A **
24582352-CTTTT-C 22436205-CTTTT-C P3_t2 17×T**
9956347-C-A 10118738-C-A **
10023745-C-A 10186136-C-A **
6133173-T-A 6265132-T-A **
10847090-C-A **
23007258-G-T 20845372-G-T **
17926557-AAAG-A 15814677-AAAG-A **
17181678-G-T 15069798-G-T **
23137343-C-A 20975457-C-A **
6133191-G-C 6265150-G-C **
28818502-G-T 26672355-G-T **
10866084-C-CT **
16070794-C-A 13958914-C-A **
10005926-C-A 10168317-C-A **
17215054-G-T 15103174-G-T **
6457789-C-A 6589748-C-A **
28555577-C-A 26409430-C-A **
14537827-C-A 12426028-C-A **
13891920-CA-C 11771214-CA-C 11×A**
3759370-C-A 3891329-C-A **
10826568-G-T **
28514438-C-A 26368291-C-A **
10912028-C-A **
9440294-C-A 9602685-C-A **
9601490-ATG-A 9763881-ATG-A IR3_Prx **
9929770-A-T 10092161-A-T **
5562413-C-A 5694372-C-A **
8314146-CTTTTT-C 8446105-CTTTTT-C 24×T**
11011338-C-A **
21468128-C-A 19306242-C-A **
13468307-C-A 11312631-C-A **
9929726-T-C 10092117-T-C **
9929727-G-C 10092118-G-C **
20865359-C-CACAA 18703473-C-CACAA P4_Dst **
4781142-G-T 4913101-G-T **
21023305-A-T 18861419-A-T P4_Dst **
10754907-C-T **
28549880-G-T 26403733-G-T **
10926153-G-T **
10926189-T-G **
10926190-A-T **
10926191-CACAAA-C **
3609703-C-A 3741662-C-A **
3506465-C-A 3638424-C-A **
3917415-GT-G 4049374-GT-G 10×T**
8811249-A-C 8943208-A-C **
8236788-A-G 8368747-A-G **
8279585-C-T 8411544-C-T **
8369594-C-A 8501553-C-A **
8733027-G-T 8864986-G-T **
8733175-G-T 8865134-G-T **
8811246-A-C 8943205-A-C **
8816415-G-T 8948374-G-T **
8074203-A-T 8206162-A-T **
8850152-T-A 8982111-T-A **
8911703-G-C 9043662-G-C **
9116395-G-T **
9507957-C-A 9670348-C-A **
9507976-C-A 9670367-C-A **
9511780-C-A 9674171-C-A **
8076957-C-A 8208916-C-A **
7986193-G-T 8118152-G-T **
9562312-TG-T 9724703-TG-T IR3_Prx **
7197356-C-A 7329315-C-A **
7091159-C-A 7223118-C-A **
7108334-T-G 7240293-T-G **
7110974-C-A 7242933-C-A **
7111861-T-G 7243820-T-G **
7148261-C-A 7280220-C-A **
7185449-C-A 7317408-C-A **
7201478-G-A 7333437-G-A **
7829502-G-T 7961461-G-T **
7225579-T-G 7357538-T-G **
4023399-G-T 4155358-G-T **
7422767-G-A 7554726-G-A **
7621243-T-C 7753202-T-C **
7629985-C-A 7761944-C-A **
7645313-C-A 7777272-C-A **
7710348-C-A 7842307-C-A **
9511970-G-C 9674361-G-C **
9887959-G-T 10050350-G-T **
7041416-C-A 7173375-C-A **
10792742-C-A **
10755281-C-T **
10766311-C-G **
10768989-G-T **
10771554-C-A **
10783465-C-A **
10790501-C-A **
10792766-T-A **
10755271-C-T **
10792774-A-G **
10796090-T-A **
10800206-A-T **
10828794-CAGTGG-C **
10834729-T-A **
10847088-C-A **
10755274-C-T **
10751896-C-A **
9910168-G-T 10072559-G-T **
10659460-G-T **
9910429-G-T 10072820-G-T **
9929710-T-A 10092101-T-A **
9949943-C-A 10112334-C-A **
9962411-T-A 10124802-T-A **
10034194-C-A 10196585-C-A **
10039835-C-A 10202226-C-A **
10661728-C-T **
10751895-G-C **
10664854-C-A **
10666460-C-A **
10671792-C-A **
10682991-A-T **
10745245-C-A **
10751883-T-A **
10751885-C-A **
7043060-C-A 7175019-C-A **
7369123-C-A 7501082-C-A **
7030970-G-C 7162929-G-C **
5062666-A-T 5194625-A-T **
4873868-T-G 5005827-T-G **
4902257-T-G 5034216-T-G **
4962845-C-A 5094804-C-A **
4970575-G-T 5102534-G-T **
5054898-G-T 5186857-G-T **
5054910-G-T 5186869-G-T **
5077834-G-T 5209793-G-T **
4788826-C-A 4920785-C-A **
5088874-C-A 5220833-C-A **
5129111-C-A 5261070-C-A **
5171503-A-T 5303462-A-T **
5184165-A-C 5316124-A-C **
5243653-T-G 5375612-T-G **
5283354-T-A 5415313-T-A **
4873743-T-G 5005702-T-G **
4779427-C-A 4911386-C-A **
5420471-T-C 5552430-T-C **
4205337-G-T 4337296-G-T **
4083153-A-T 4215112-A-T **
4123996-T-A 4255955-T-A **
4137238-G-T 4269197-G-T **
4138349-C-A 4270308-C-A **
4155926-T-A 4287885-T-A **
4183350-C-A 4315309-C-A **
4426194-C-A 4558153-C-A **
4730428-G-T 4862387-G-T **
4438582-C-A 4570541-C-A **
4444910-G-T 4576869-G-T **
4469316-G-A 4601275-G-A **
4597226-A-AT 4729185-A-AT **
4647201-G-T 4779160-G-T **
4687162-G-T 4819121-G-T **
4691078-C-A 4823037-C-A **
5325258-C-T 5457217-C-T **
5062670-G-T 5194629-G-T **
5430155-T-C 5562114-T-C **
6626638-C-A 6758597-C-A **
6637204-T-A 6769163-T-A **
6651510-G-T 6783469-G-T **
6321385-C-CAA 6453344-C-CAA IR3_Dst **
6763922-C-A 6895881-C-A **
6328801-A-T 6460760-A-T IR3_Dst **
6790370-C-A 6922329-C-A **
6146631-C-A 6278590-C-A BY155865 IR3_Dst **
6366357-C-A 6498316-C-A **
6133227-T-A 6265186-T-A **
6465333-C-A 6597292-C-A **
6133170-G-T 6265129-G-T **
6074534-G-T 6206493-G-T **
6882229-G-A 7014188-G-A **
6328797-C-A 6460756-C-A IR3_Dst **
5888246-GA-G 6020205-GA-G **
6903597-T-A 7035556-T-A **
5758252-C-T 5890211-C-T **
5701128-T-G 5833087-T-G **
5674693-G-T 5806652-G-T **
6507332-T-C 6639291-T-C **
5644630-C-A 5776589-C-A **
5563119-C-T 5695078-C-T **
5537773-C-A 5669732-C-A **
5471651-C-A 5603610-C-A **
7008801-C-A 7140760-C-A **
10926662-G-A,C ***
3332174-C-A 3464133-C-A ***
5459341-A-C 5591300-A-C ***
10824172-C-CGGAAG ***
16612636-CT-C,CTT 14500756-CT-C,CTT 15×T***
58981884-C-T 56835737-C-T ***
56842979-C-A ***
13458075-GCATTC-G 11302399-GCATTC-G 9×CATTC***
56831889-ATTCCATTCCTTTCCA-A,ATTCCATTCCTTTCCC ***
16003157-G-T 13891277-G-T ***
56861708-A-G,T ***
10808970-A-C ***
11026012-C-A ***
7165306-G-GTTT 7297265-G-GTTT 20×T***
10666970-G-C ***
9229374-C-A 9391765-C-A ***
8733558-G-T 8865517-G-T ***
19537901-CA-C,CAA 17426021-CA-C,CAA 17×A***
7017965-A-C 7149924-A-C ***
15400269-C-A 13288389-C-A ***
22264707-T-C 20102821-T-C DYZ19 ***
13453879-A-T 11298203-A-T ***
10666413-C-A ***
10682808-C-A ***
13478132-C-A 11322456-C-A ***
18634729-C-A 16522849-C-A ***
10694139-C-T ***
13460289-T-C 11304613-T-C ***
10824186-C-G ***
10987554-C-A ***
23188642-C-A 21026756-C-A ***
13454582-C-A 11298906-C-A ***
56839236-C-A ***
14136175-C-A 12015469-C-A ***
30780-G-T ***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.

Age Analysis Information (work in progress)

AllMcDonaldYFull
Kit: 1244921009133781862628037979
Used in age calculations1009133781862628037979
Counts of SNPs33
Variant counts last updated 2019-05-11 10:40:32.



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