Tree Position

R-P312/S116 > Z40481 > ZZ11 > DF27/S250 > ZZ12 > BY3332 > ~20127104-G-

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19) POS-REF-ALT (hg38) Blocks Names Region McDonald BED combBED STRBigY2
B69645
20076474-C-T 17964594-C-T P5_Dst A*
22309588-T-C 20147702-T-C DYZ19 A*
24265579-C-G 22119432-C-G P3_b1 A*
20030191-C-A 17918311-C-A P5_Prx A*
20053264-G-A 17941384-G-A P5_Prx A*
22257033-C-A 20095147-C-A DYZ19 A*
25991116-T-A 23844969-T-A Y5628 P1_Y1 A*
25914195-G-A 23768048-G-A P1_Y1 A*
22450580-A-T 20288694-A-T DYZ19 A*
28816529-G-T 26670382-G-T A*
28817542-T-G 26671395-T-G A*
13687749-A-C 11532073-A-C A*
6327620-G-C 6459579-G-C IR3_Dst A*
6167572-A-C 6299531-A-C IR3_Dst A*
21638443-G-C 19476557-G-C BY134353 YY+
19179732-T-C 17067852-T-C BY126983 Y+
21471493-T-A 19309607-T-A BY55260 YY+
21466432-C-A 19304546-C-A BY133110 YY+
21251349-T-C 19089463-T-C BY131411 YY+
19565309-A-G 17453429-A-G BY129992 Y+
21607829-C-T 19445943-C-T BY134135 YY+
17762172-A-G 15650292-A-G BY117216 YY+
2735695-C-T 2867654-C-T BY56121 YY+
2754309-GA-G 2886268-GA-G +
9166073-A-G 9328464-A-G BY78711 +
23060572-G-A 20898686-G-A BY55419 YY+
17112036-A-G 15000156-A-G BY112379 YY+
17038179-G-A 14926299-G-A BY52006 YY+
17017440-A-T 14905560-A-T BY111766 YY+
16736602-G-A 14624722-G-A BY109686 YY+
14170011-G-T 12049305-G-T BY43326 YY+
6921301-T-G 7053260-T-G BY62209 YY+
14921857-G-T 12809922-G-T BY98499 YY+
6753232-T-C 6885191-T-C BY61082 YY+
15108360-C-A 12996447-C-A BY99739 YY+
5212386-T-A 5344345-T-A BY58583 +
22464786-G-A 20302900-G-A BY221402 DYZ19 +
16200068-G-A 14088188-G-A BY105954 YY+
22278661-G-T 20116775-G-T BY48494 DYZ19 *
3718923-A-G 3850882-A-G *
22320136-A-C 20158250-A-C DYZ19 *
11010536-T-G **
14074570-C-A 11953864-C-A **
14023576-C-A 11902870-C-A **
13984267-C-A 11863561-C-A **
13973301-C-A 11852595-C-A FT62984 **
10905240-G-T **
10912686-C-A **
13972905-G-T 11852199-G-T **
10913711-C-A **
13860605-A-G 11739899-A-G **
13895227-C-A 11774521-C-A **
14076142-G-A 11955436-G-A **
13850012-G-T 11729306-G-T **
11658536-C-T **
11658531-A-T **
11658529-A-C **
11658516-T-G **
13734384-G-A 11578708-G-A **
10915786-T-G **
13625282-C-A 11469606-C-A **
10892917-T-G **
10881172-C-A **
14148012-CAAAAATAAATA-C 12027306-CAAAAATAAATA-C **
10865579-A-T **
15380111-T-G 13268231-T-G **
10865557-C-T **
15301387-G-T 13189486-G-T **
10865566-C-A **
15251856-C-A 13139942-C-A **
10865577-C-A **
15068938-G-T 12957029-G-T **
15047918-T-G 12936009-T-G **
14965413-T-C 12853488-T-C **
10916776-C-A **
14894056-T-G 12782122-T-G **
12730473-A-ATT 21×T**
10866480-T-C **
14700592-C-G 12588658-C-G **
14488378-G-A 12367647-G-A **
14397824-C-A 12277120-C-A **
14283580-C-A 12162874-C-A **
14273044-C-A 12152338-C-A **
13605182-A-G 11449506-A-G **
13553979-C-A 11398303-C-A **
11013988-G-T **
11033197-GC-G **
13242912-C-A 11087236-C-A **
13234560-C-A 11078884-C-A **
10973630-T-C **
13221891-G-T 11066215-G-T **
13198751-G-T 11043075-G-T **
11038196-A-C **
10983628-C-A **
10985101-C-A **
10985235-T-TA **
13267319-G-T 11111643-G-T **
10985258-C-CAATTT **
11030634-T-G **
11030430-G-T **
11022008-C-T **
10989344-C-A **
10997474-A-C **
11004773-GCATTCCATTC-G **
11006746-C-A **
11022007-A-C **
13246327-G-T 11090651-G-T **
13269592-A-AC 11113916-A-AC **
13522197-C-T 11366521-C-T **
13474513-C-G 11318837-C-G **
13522184-T-C 11366508-T-C **
13522172-T-C 11366496-T-C **
13488968-C-A 11333292-C-A **
13474575-A-C 11318899-A-C **
13474567-C-G 11318891-C-G **
10920435-C-A **
10920437-A-G **
13474557-A-G 11318881-A-G **
13468177-AC-A 11312501-AC-A **
13269600-AC-A 11113924-AC-A **
13468178-C-T 11312502-C-T **
10920441-G-A **
13417365-C-A 11261689-C-A **
13309918-T-A 11154242-T-A **
10931878-C-A **
10944857-A-C **
10956313-C-A **
15406827-C-A 13294947-C-A **
13299148-G-A 11143472-G-A **
15394875-A-G 13282995-A-G **
58885152-C-A 56705719-G-T **
15410938-T-C 13299058-T-C **
21579277-T-G 19417391-T-G **
23202933-T-C 21041047-T-C **
23192928-G-T 21031042-G-T **
23184311-A-G 21022425-A-G **
23127977-G-T 20966091-G-T **
22843805-G-A 20681919-G-A **
22475654-A-T 20313768-A-T DYZ19 **
22050202-G-A 19888316-G-A **
21824870-C-A 19662984-C-A **
21673282-C-A 19511396-C-A **
21371601-C-A 19209715-C-A **
23398189-C-A 21236303-C-A **
21306443-T-G 19144557-T-G **
21283486-A-C 19121600-A-C **
21216946-A-AAAATAAAT 19055060-A-AAAATAAAT 12×AAAT**
21109989-A-C 18948103-A-C **
20840200-T-G 18678314-T-G P4_Gap **
20516348-A-C 18354462-A-C P5_Dst **
20484917-A-AG 18323031-A-AG P5_Dst **
20391465-T-TC 18229579-T-TC P5_Dst **
20126660-A-C 18014780-A-C P5_Dst **
19460396-C-A 17348516-C-A **
23339485-TAGATA-T 21177599-TAGATA-T **
23475563-T-G 21313677-T-G **
19000044-C-A 16888164-C-A **
28243516-G-T 26097369-G-T P1_b4 **
56873862-G-T **
56839107-G-T **
28700958-C-A 26554811-C-A **
28646665-G-T 26500518-G-T **
28581026-C-A 26434879-C-A **
28572652-G-T 26426505-G-T **
28555201-A-C 26409054-A-C **
28544974-C-A 26398827-C-A **
28438217-A-C 26292070-A-C P1_gr2 **
28234323-G-T 26088176-G-T P1_b4 **
23505107-C-A 21343221-C-A **
28229497-A-G 26083350-A-G P1_b4 **
27967336-GTATATA-G 25821189-GTATATA-G P1_Y2 10×TA**
27595956-C-A 25449809-C-A P1_Y2 **
26120120-C-A 23973973-C-A P1_Y1 **
26072946-C-A 23926799-C-A P1_Y1 **
25096517-GA-G 22950370-GA-G g1 **
24249224-G-A 22103077-G-A P3_b1 **
23997074-C-A 21850927-C-A **
23952897-T-G 21806750-T-G **
21781271-T-A **
19298025-C-A 17186145-C-A **
18999986-TC-T 16888106-TC-T **
15411335-A-C 13299455-A-C **
16090337-A-G 13978457-A-G **
16583239-G-A 14471359-G-A **
16554761-C-A 14442881-C-A **
16528171-A-T 14416291-A-T **
16463369-A-T 14351489-A-T **
16426188-T-G 14314308-T-G **
16422886-C-A 14311006-C-A **
16295073-C-A 14183193-C-A **
16271004-CTCTCAAACTTATG-C 14159124-CTCTCAAACTTATG-C **
10863281-C-A **
16057224-C-A 13945344-C-A **
16847818-G-T 14735938-G-T **
16037436-C-A 13925556-C-A **
15844941-A-G 13733061-A-G **
15798088-C-A 13686208-C-A **
15759610-C-A 13647730-C-A **
15752638-C-A 13640758-C-A 25×CTT**
15726282-C-A 13614402-C-A **
15685064-A-G 13573184-A-G **
15671059-C-A 13559179-C-A **
15585096-A-C 13473216-A-C **
15418588-T-C 13306708-T-C **
16651905-C-A 14540025-C-A **
16925907-C-A 14814027-C-A **
18928793-G-T 16816913-G-T **
18008676-GTTTTT-G 15896796-GTTTTT-G P7_Dst 11×T**
18891276-C-A 16779396-C-A **
18873371-T-G 16761491-T-G **
18764598-C-A 16652718-C-A **
18739524-C-A 16627644-C-A **
18709732-C-A 16597852-C-A **
18579008-C-A 16467128-C-A **
18215876-C-A 16103996-C-A **
18178007-T-C 16066127-T-C **
18088261-TTCCTTAGTTTA-T 15976381-TTCCTTAGTTTA-T **
17873657-G-T 15761777-G-T **
16931676-A-T 14819796-A-T **
17673639-C-A 15561759-C-A FGC73700 **
17637782-C-A 15525902-C-A **
17626567-G-T 15514687-G-T **
17548059-C-A 15436179-C-A **
17498896-C-A 15387016-C-A **
17434163-A-G 15322283-A-G **
17245723-C-A 15133843-C-A **
17115125-C-A 15003245-C-A **
17079057-A-C 14967177-A-C **
16942154-C-A 14830274-C-A **
10865489-T-C **
10882975-C-A **
10860021-C-CACTCA **
3021738-C-A 3153697-C-A **
3473228-C-A 3605187-C-A **
3417220-C-A 3549179-C-A **
3413992-C-A 3545951-C-A **
3409727-G-T 3541686-G-T **
3285008-T-G 3416967-T-G **
3272723-C-A 3404682-C-A **
3175671-A-C 3307630-A-C **
3156720-G-T 3288679-G-T **
3153172-T-C 3285131-T-C **
3022110-G-T 3154069-G-T **
3012226-TAGGTAAATGCACTGCTACA-T 3144185-TAGGTAAATGCACTGCTACA-T **
3571609-G-T 3703568-G-T **
2963152-C-A 3095111-C-A **
2960414-G-T 3092373-G-T **
2941426-C-A 3073385-C-A **
2923691-G-T 3055650-G-T **
2856623-C-A 2988582-C-A **
2778646-A-C 2910605-A-C **
56748123-G-T **
11018262-C-A **
26120112-C-T 23973965-C-T P1_Y1 **
13692773-A-T 11537097-A-T **
10920489-T-C **
3548244-C-A 3680203-C-A **
3640764-C-A 3772723-C-A **
10920448-C-A **
4414230-G-T 4546189-G-T **
5226466-A-G 5358425-A-G **
5098327-C-A 5230286-C-A **
5088152-T-A 5220111-T-A **
5015598-A-C 5147557-A-C **
4958452-C-A 5090411-C-A **
4852307-G-T 4984266-G-T **
10848013-ACTCCACTCC-A **
4590169-T-G 4722128-T-G **
4561417-A-T 4693376-A-T **
4509433-C-T 4641392-C-T **
4438033-C-A 4569992-C-A **
4366153-G-T 4498112-G-T **
3763015-G-T 3894974-G-T **
4301072-A-C 4433031-A-C **
4201259-A-G 4333218-A-G **
4191066-T-C 4323025-T-C **
4107951-C-A 4239910-C-A **
4098322-G-T 4230281-G-T **
4077616-G-T 4209575-G-T **
4065404-C-A 4197363-C-A **
4049605-C-A 4181564-C-A 11×T**
4003022-T-G 4134981-T-G **
3960681-G-T 4092640-G-T **
3892862-C-A 4024821-C-A **
10920471-G-T **
10920439-A-T **
5494196-G-T 5626155-G-T **
10658289-A-T **
27570837-G-T 25424690-G-T P1_Y2 **
9130967-T-G 9293358-T-G **
10943224-C-A **
14700591-C-A 12588657-C-A **
11016382-C-A **
11016380-T-G **
17434041-C-A 15322161-C-A **
6731258-C-A 6863217-C-A **
6350727-C-A 6482686-C-A **
10989069-C-T **
10658290-G-A **
5899545-G-C 6031504-G-C **
10865564-A-C **
9956376-AAAAAG-A 10118767-AAAAAG-A **
27516008-C-A 25369861-C-A P1_Y2 **
13474581-C-T 11318905-C-T **
14488370-A-G 12367639-A-G **
14538055-C-A 12426256-C-A **
7832147-C-T 7964106-C-T **
15842638-C-T 13730758-C-T Z21920 **
13244885-T-C 11089209-T-C **
9927326-GAC-G 10089717-GAC-G **
9850552-A-T 10012943-A-T BY81445 **
17854346-C-A 15742466-C-A **
10835516-C-T **
6918563-AAAAG-A 7050522-AAAAG-A **
21993828-C-A 19831942-C-A **
10762274-G-C **
10983296-C-A **
13468173-A-G 11312497-A-G **
22802314-T-G 20640428-T-G **
10973272-C-T **
21824886-T-C 19663000-T-C **
13996328-C-A 11875622-C-A **
16186526-T-G 14074646-T-G **
10762313-A-T **
10762312-T-C **
10762299-A-C **
10762289-T-A **
10985096-C-A **
23435705-A-T 21273819-A-T **
10793215-G-T **
7868126-C-A 8000085-C-A **
5449828-G-T 5581787-G-T **
10985048-T-A **
10920447-C-A **
22564827-G-A 20402941-G-A **
16481049-C-A 14369169-C-A **
4928928-C-A 5060887-C-A **
15423473-TCA-T 13311593-TCA-T **
13734429-T-A 11578753-T-A **
23249295-C-A 21087409-C-A **
5299170-C-A 5431129-C-A **
4590269-G-T 4722228-G-T **
5607387-T-G 5739346-T-G **
10690743-T-G **
10779909-G-T **
10777950-CCATT-C **
10770617-A-AC **
10770614-A-ATTTTATTCC **
10768357-ACAACATTCCATT-A **
10765868-G-T **
10764597-T-G **
10753201-A-T **
10748009-TC-T **
10747982-A-G **
10688142-G-T **
10781305-A-AC **
10684593-C-T **
10684585-T-A **
10684570-T-C **
5608797-C-A 5740756-C-A **
10669524-C-CACTCT **
10669488-C-G **
10669349-GATTCC-G **
10658314-A-C **
10658311-A-G **
10654609-C-A **
10617694-T-G **
10781276-T-A **
10781330-A-G **
9936802-G-T 10099193-G-T **
10804471-C-T **
10838101-C-A **
10837312-TTCCAC-T **
10823491-T-A **
10823461-C-CAT **
10823460-T-G **
10823455-A-ACTT **
10821177-A-C **
10821167-A-C **
10807364-C-G **
10807071-T-C **
10804448-C-CCATGG **
10785763-G-T **
10804441-C-T **
10804439-C-T **
10804424-T-C **
10802967-C-A **
10802923-C-T **
10802918-C-T **
10801677-CA-C **
10790014-T-G **
10790009-T-G **
10789900-T-G **
10788921-G-T **
10016146-A-C 10178537-A-C **
10669530-A-ACACAT **
9924488-A-C 10086879-A-C **
6818873-G-T 6950832-G-T **
7333184-G-T 7465143-G-T BY64624 **
7238150-G-T 7370109-G-T **
7224147-C-A 7356106-C-A **
7223283-G-T 7355242-G-T **
7115568-T-A 7247527-T-A **
7104971-C-A 7236930-C-A **
7092487-C-A 7224446-C-A **
7013378-A-T 7145337-A-T **
6803058-CT-C 6935017-CT-C **
7623525-C-A 7755484-C-A **
6774196-C-A 6906155-C-A **
6752685-C-A 6884644-C-A **
6457026-AC-A 6588985-AC-A **
6401983-G-A 6533942-G-A **
6358269-C-A 6490228-C-A **
6177521-G-T 6309480-G-T IR3_Dst **
5851978-A-C 5983937-A-C **
5848248-A-C 5980207-A-C **
5683513-G-T 5815472-G-T **
7608474-T-A 7740433-T-A **
7223015-C-A 7354974-C-A **
7754516-G-T 7886475-G-T **
8078045-T-A 8210004-T-A **
9574853-CAA-C 9737244-CAA-C IR3_Prx 12×A**
9119941-A-C **
8761474-T-G 8893433-T-G **
8697445-C-A 8829404-C-A **
8321576-A-G 8453535-A-G **
8136691-C-A 8268650-C-A **
8100516-T-G 8232475-T-G **
31689-G-T **
7775040-A-T 7906999-A-T **
7269610-CTT-C,CTTT 7401569-CTT-C,CTTT 22×T***
21425184-AGCTTTAGTCTTATTAT-A 19263298-AGCTTTAGTCTTATTAT-A ***
10930198-C-T ***
13455719-TATTCCATTCCATTCC-T,TATTCC 11300043-TATTCCATTCCATTCC-T,TATTCC 10×ATTCC***
23123195-C-A 20961309-C-A ***
11645793-G-A ***
14927089-C-A 12815154-C-A ***
6773408-C-A 6905367-C-A ***
19415655-C-A 17303775-C-A ***
8786842-G-A 8918801-G-A ***
13642465-C-A 11486789-C-A ***
16034114-C-A 13922234-C-A ***
16451497-G-T 14339617-G-T ***
16006589-ATCCCTTGGTTC-A 13894709-ATCCCTTGGTTC-A ***
9030067-G-T 9192458-G-T ***
19128754-G-T 17016874-G-T ***
16620480-C-T 14508600-C-T PF2991 M3331 CTS6026 ***
22171482-G-T 20009596-G-T ***
10023972-C-A 10186363-C-A ***
5204621-G-T 5336580-G-T ***
5830091-TATATAGTAAA-T 5962050-TATATAGTAAA-T ***
56847868-G-T ***
7935849-C-A 8067808-C-A ***
10801714-T-G ***
14143075-C-A 12022369-C-A ***
22902108-CAAAA-C,CAAA 20740222-CAAAA-C,CAAA 17×A***
22284213-A-T 20122327-A-T BY216071 DYZ19 ***
15059623-C-A 12947715-C-A ***
17036831-C-A 14924951-C-A ***
22430695-T-C 20268809-T-C DYZ19 ***
10826879-C-A ***
8760517-CTTTTTT-C,CTTT 8892476-CTTTTTT-C,CTTT 20×T***
9850545-AC-A 10012936-AC-A ***
22729267-C-A 20567381-C-A ***
13478256-CGAG-C,CACG 11322580-CGAG-C,CACG ***
11025425-A-G ***
14824778-T-A 12712845-T-A ***
14301706-C-T 12181000-C-T ***
14391874-TAA-T,TAAA 12271170-TAA-T,TAAA 15×A***
10988514-CCATTA-C,CCCTTA ***
10988507-C-G,T ***
10988475-TCCTCCATTCCA-CCCTCCATTCCA,T ***
16623696-G-T 14511816-G-T ***
21323379-C-A 19161493-C-A ***
21187118-C-A 19025232-C-A ***
23554900-C-A 21393014-C-A ***
13868121-TAATGG-T 11747415-TAATGG-T 5×AATGG***
10672711-TTTA-T ***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.

Age Analysis Information (work in progress)

AllMcDonaldYFull
Kit: B69645928715775935207504411
Used in age calculations928715775935207504411
Counts of SNPs2018
Variant counts last updated 2019-07-19 21:31:07.



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